Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

19496519 .. 19499838

Gene Structure 3320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1237000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGGATTCTCCACGCAAAAAGTATTCACGATCCCCTTCTCCTTGGAGAGCTCAGTCCAGGTCCAGGTCTAGGTCTTGGTCTAGGCCGAGGTCGAGGTCAAGATCATTGTCAAGGCCACCAAGGCAGAGGTCTCGCTCTAGAAGTCGTGGCAGATCAAGGTCCAGAAGTCCTGGCAGGGCTGCTGCTATAAATCCTGGAAATACATTGTATGTGACCGGCCTATCTACAAGGGTCTCAGAGAAGGATGTTGAAAGGCACTTTTCAAAGGAGGGAAAGGTAGCTTCATGCTTTCTTGTTATGGAGCCTCGGACTCGGATTTCTCGTGGTTTTGCCTTCATTACGATGGACTCAGTTGAAGATGCTGAACGGTGCATTAAAAATCTCAATCAGTCAGTTCTGGAAGGTCGATACATAACTGTTGAGAGGTCTCGGAGGAAGCGACCAAGAACGCCAACACCTGGGCATTATCTTGGGTTGAAAAATACTAGAGACTATGGCTACCGAGGTGATCGTGATCGAGATCGTGAACGCGATCGTGATCGTGATCGTGGTAGGTACCGTGGGGGCTCAGCTCGTGATGACTATGGATATAGGAGGTCTCCAAGGCGCTCACCCTATAGAGGTGGCCGTGATTATTCTCCAAGGGGCGGCTCACCTTATGGCGGAAGATCAAGAAGAGAGAGGTCTTATTCTCCCTATGGAAGCCCGGAAAGAAAGTATGCTCGTGGCTCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

247

Amino Acids

28.67

Weight (kDa)

11.57

Isoelectric Point (pI)

87.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	70 - 139	2e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	558
AccB7I	CCANNNNNTGG	1 cut(s)	461
AccII	CGCG	1 cut(s)	534
AciI	CCGC	3 cut(s)	5, 651, 666
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	628
AfaI	GTAC	1 cut(s)	560
AfiI	CCNNNNNNNGG	6 cut(s)	66, 72, 461, 623, 650, 665
AgsI	TTSAA	4 cut(s)	254, 267, 359, 481
AjnI	CCWGG	5 cut(s)	59, 65, 172, 196, 460
AluBI	AGCT	3 cut(s)	53, 284, 575
AluI	AGCT	3 cut(s)	53, 284, 575
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	5 cut(s)	138, 241, 435, 486, 606
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	4 cut(s)	86, 116, 220, 628
ApeKI	GCWGC	2 cut(s)	182, 185
Asp718I	GGTACC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	2 cut(s)	63, 162
AsuC2I	CCSGG	1 cut(s)	710
AsuHPI	GGTGA	3 cut(s)	521, 606, 648
AvaII	GGWCC	2 cut(s)	63, 162
BanI	GGYRCC	1 cut(s)	558
BanII	GRGCYC	2 cut(s)	55, 572
BauI	CACGAG	3 cut(s)	324, 576, 726
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	169, 172
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	1 cut(s)	615
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	5 cut(s)	61, 67, 174, 198, 462
BcnI	CCSGG	1 cut(s)	710
BcoDI	GTCTC	5 cut(s)	138, 241, 435, 486, 606
BfaI	CTAG	5 cut(s)	72, 84, 141, 489, 735
BfmI	CTRYAG	1 cut(s)	619
BfoI	RGCGCY	1 cut(s)	613
BglI	GCCNNNNNGGC	1 cut(s)	124
BisI	GCNGC	3 cut(s)	183, 186, 652
BlpI	GCTNAGC	1 cut(s)	571
BlsI	GCNGC	3 cut(s)	184, 187, 653
Bme1390I	CCNGG	6 cut(s)	61, 67, 174, 198, 462, 710
Bme18I	GGWCC	2 cut(s)	63, 162
BmgT120I	GGNCC	2 cut(s)	63, 162
BmiI	GGNNCC	2 cut(s)	306, 560
BmrFI	CCNGG	6 cut(s)	61, 67, 174, 198, 462, 710
BmsI	GCATC	1 cut(s)	352
Bpu1102I	GCTNAGC	1 cut(s)	571
BpuMI	CCSGG	1 cut(s)	710
BsaBI	GATNNNNATC	4 cut(s)	516, 522, 540, 546
BsaI	GGTCTC	4 cut(s)	138, 241, 435, 606
BsaJI	CCNNGG	9 cut(s)	44, 89, 122, 308, 461, 505, 562, 605, 644
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 72, 461, 623, 650, 665
Bse118I	RCCGGY	1 cut(s)	218
Bse8I	GATNNNNATC	4 cut(s)	516, 522, 540, 546
BseBI	CCWGG	5 cut(s)	61, 67, 174, 198, 462
BseDI	CCNNGG	9 cut(s)	44, 89, 122, 308, 461, 505, 562, 605, 644
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	4 cut(s)	516, 522, 540, 546
BseLI	CCNNNNNNNGG	6 cut(s)	66, 72, 461, 623, 650, 665
BseMII	CTCAG	4 cut(s)	68, 252, 366, 585
BseXI	GCAGC	2 cut(s)	169, 172
Bsh1236I	CGCG	1 cut(s)	534
Bsh1285I	CGRYCG	1 cut(s)	538
BshFI	GGCC	4 cut(s)	88, 118, 222, 630
BshNI	GGYRCC	1 cut(s)	558
BsiEI	CGRYCG	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	219, 710
BslI	CCNNNNNNNGG	6 cut(s)	66, 72, 461, 623, 650, 665
BsmAI	GTCTC	5 cut(s)	138, 241, 435, 486, 606
BsnI	GGCC	4 cut(s)	88, 118, 222, 630
Bso31I	GGTCTC	4 cut(s)	138, 241, 435, 606
Bsp1286I	GDGCHC	2 cut(s)	55, 572
Bsp1720I	GCTNAGC	1 cut(s)	571
BspACI	CCGC	3 cut(s)	5, 651, 666
BspANI	GGCC	4 cut(s)	88, 118, 222, 630
BspCNI	CTCAG	4 cut(s)	67, 251, 365, 584
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	2 cut(s)	306, 560
BspPI	GGATC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	558
BspTNI	GGTCTC	4 cut(s)	138, 241, 435, 606
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	9 cut(s)	44, 89, 122, 308, 461, 505, 562, 605, 644
BssSI	CACGAG	3 cut(s)	324, 576, 726
BssT1I	CCWWGG	4 cut(s)	44, 122, 605, 644
Bst2BI	CACGAG	3 cut(s)	324, 576, 726
Bst2UI	CCWGG	5 cut(s)	61, 67, 174, 198, 462
Bst4CI	ACNGT	3 cut(s)	372, 421, 563
Bst6I	CTCTTC	1 cut(s)	673
BstDEI	CTNAG	4 cut(s)	54, 238, 352, 571
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	534
BstH2I	RGCGCY	1 cut(s)	613
BstHHI	GCGC	1 cut(s)	612
BstMAI	GTCTC	5 cut(s)	138, 241, 435, 486, 606
BstMCI	CGRYCG	1 cut(s)	538
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	5 cut(s)	61, 67, 174, 198, 462
BstSCI	CCNGG	6 cut(s)	59, 65, 172, 196, 460, 708
BstSFI	CTRYAG	1 cut(s)	619
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	169, 172
BsuRI	GGCC	4 cut(s)	88, 118, 222, 630
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	1 cut(s)	253
CfoI	GCGC	1 cut(s)	612
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	63, 162
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	1 cut(s)	288
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	4 cut(s)	54, 238, 352, 571
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	673
EarI	CTCTTC	1 cut(s)	673
EciI	GGCGGA	2 cut(s)	20, 681
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	4 cut(s)	44, 122, 605, 644
Eco24I	GRGCYC	2 cut(s)	55, 572
Eco31I	GGTCTC	4 cut(s)	138, 241, 435, 606
Eco47I	GGWCC	2 cut(s)	63, 162
Eco53kI	GAGCTC	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	53
EcoRII	CCWGG	5 cut(s)	59, 65, 172, 196, 460
EcoT14I	CCWWGG	4 cut(s)	44, 122, 605, 644
EcoT38I	GRGCYC	2 cut(s)	55, 572
ErhI	CCWWGG	4 cut(s)	44, 122, 605, 644
FaeI	CATG	1 cut(s)	291
FatI	CATG	1 cut(s)	287
Fnu4HI	GCNGC	3 cut(s)	183, 186, 652
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	2 cut(s)	55, 572
Fsp4HI	GCNGC	3 cut(s)	183, 186, 652
FspBI	CTAG	5 cut(s)	72, 84, 141, 489, 735
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	3 cut(s)	183, 186, 652
HaeII	RGCGCY	1 cut(s)	613
HaeIII	GGCC	4 cut(s)	88, 118, 222, 630
HapII	CCGG	2 cut(s)	219, 710
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	1 cut(s)	291
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HinfI	GANTC	3 cut(s)	8, 313, 350
HpaII	CCGG	2 cut(s)	219, 710
HphI	GGTGA	3 cut(s)	521, 606, 648
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	4 cut(s)	241, 312, 318, 435
Hpy8I	GTNNAC	1 cut(s)	530
HpyAV	CCTTC	4 cut(s)	48, 238, 346, 398
HpyCH4III	ACNGT	3 cut(s)	372, 421, 563
HpyCH4V	TGCA	1 cut(s)	375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	4 cut(s)	54, 238, 352, 571
Hsp92II	CATG	1 cut(s)	291
HspAI	GCGC	1 cut(s)	610
KpnI	GGTACC	1 cut(s)	562
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	2 cut(s)	169, 172
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	5 cut(s)	72, 84, 141, 489, 735
MaeIII	GTNAC	1 cut(s)	214
MboII	GAAGA	3 cut(s)	371, 681, 690
MhlI	GDGCHC	2 cut(s)	55, 572
MlyI	GAGTC	2 cut(s)	307, 344
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	2 cut(s)	219, 710
MspR9I	CCNGG	6 cut(s)	61, 67, 174, 198, 462, 710
MvaI	CCWGG	5 cut(s)	61, 67, 174, 198, 462
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	710
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	2 cut(s)	306, 560
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	2 cut(s)	322, 439
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	184, 187, 653
Ple19I	CGATCG	1 cut(s)	538
PleI	GAGTC	2 cut(s)	307, 344
PpsI	GAGTC	2 cut(s)	307, 344
Psp124BI	GAGCTC	1 cut(s)	55
Psp6I	CCWGG	5 cut(s)	59, 65, 172, 196, 460
PspGI	CCWGG	5 cut(s)	59, 65, 172, 196, 460
PspN4I	GGNNCC	2 cut(s)	306, 560
PspPI	GGNCC	2 cut(s)	63, 162
PvuI	CGATCG	1 cut(s)	538
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
RseI	CAYNNNNRTG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	3 cut(s)	183, 186, 652
Sau96I	GGNCC	2 cut(s)	63, 162
SchI	GAGTC	2 cut(s)	307, 344
ScrFI	CCNGG	6 cut(s)	61, 67, 174, 198, 462, 710
SduI	GDGCHC	2 cut(s)	55, 572
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	619
SinI	GGWCC	2 cut(s)	63, 162
SmiMI	CAYNNNNRTG	1 cut(s)	344
SsiI	CCGC	3 cut(s)	5, 651, 666
SspMI	CTAG	5 cut(s)	72, 84, 141, 489, 735
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	6 cut(s)	59, 65, 172, 196, 460, 708
StyI	CCWWGG	4 cut(s)	44, 122, 605, 644
TaaI	ACNGT	3 cut(s)	372, 421, 563
TaqI	TCGA	3 cut(s)	95, 409, 520
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	182, 185
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	276, 328
Van91I	CCANNNNNTGG	1 cut(s)	461
VpaK11BI	GGWCC	2 cut(s)	63, 162
XbaI	TCTAGA	2 cut(s)	140, 734
XspI	CTAG	5 cut(s)	72, 84, 141, 489, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.