Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

5979592 .. 5982901

Gene Structure 3310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10991.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCGGATTCTCCTCGCAAAAGGTATTCACGTTCCCCTTCTTCATGGAGAGCTCAGTCTCATTCCAGGTCCAGGTCCAGGTCTATGTCTATGTCCAGGCCTAGGTCAAGATCAAGATCCTGGTCTAGGCCGAGGCACAGGTCTCGTTCTAGAAGTCGTGGCAGGTCAAGATCCAGAAGTCCTGGAAGGGATGCTGTTGGGAATCCTGGAAATACACTCTATGTGACTGGTCTATCTCAAAGGGCCTCAGAGAAGGACGTTGAAAGGCACTTTTCAAAGGAGGGAAAGGTAGCTTCATGTTTTCTTGTTGTTGAACCTCGTTCACGCATCTCCCGTGGTTTTGCCTTCGTTACAATGGATTCAAATGAAGATGCAGAGCGGTGCATTAAACATCTTAACCAGTCAGTTCTGGAAGGCCGATACATAACTGTGGAAAGGTCCCGGAGGAAGCGACCAAGGACTCCAACACCTGGGCATTATCTCGGATTGAAGAACACTAGGGACTCTGACCGTGGCCGCGACCGTGACCGTGACCGTGATCGTGGGAGGTACCGGGGGGGCTCAGGTCGAGATGACTATGGATACAGGAGGTCTCCTAGACGCTCCCCCTACAGAGGCAGTCGTGATTATTCCCCTAGGCGCTCTCCTTATGGCGGTGGAAGATCAAGAAGGGAGAGGTCTTATTCACCCTATGGCAGTCCAGAAAGGAAGTACAGCCGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

242

Amino Acids

28.18

Weight (kDa)

11.67

Isoelectric Point (pI)

103.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	73 - 142	1.3e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	153
Acc65I	GGTACC	1 cut(s)	549
AccB1I	GGYRCC	1 cut(s)	549
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	379
AccII	CGCG	1 cut(s)	519
AciI	CCGC	4 cut(s)	5, 379, 517, 654
AclWI	GGATC	2 cut(s)	111, 165
AcoI	YGGCCR	1 cut(s)	514
AfaI	GTAC	2 cut(s)	551, 713
AfiI	CCNNNNNNNGG	7 cut(s)	72, 78, 102, 126, 470, 614, 653
AgsI	TTSAA	5 cut(s)	263, 276, 314, 363, 490
AjnI	CCWGG	8 cut(s)	65, 71, 77, 95, 119, 181, 205, 469
AluBI	AGCT	2 cut(s)	53, 293
AluI	AGCT	2 cut(s)	53, 293
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	3 cut(s)	63, 147, 597
AlwI	GGATC	2 cut(s)	111, 165
AoxI	GGCC	5 cut(s)	98, 128, 243, 415, 514
Asp718I	GGTACC	1 cut(s)	549
AspA2I	CCTAGG	2 cut(s)	101, 635
AspLEI	GCGC	1 cut(s)	642
AspS9I	GGNCC	4 cut(s)	69, 75, 243, 438
AsuC2I	CCSGG	2 cut(s)	442, 554
AsuHPI	GGTGA	1 cut(s)	678
AvaII	GGWCC	3 cut(s)	69, 75, 438
AvrII	CCTAGG	2 cut(s)	101, 635
BanI	GGYRCC	1 cut(s)	549
BanII	GRGCYC	2 cut(s)	55, 563
Bbv12I	GWGCWC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	702
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	8 cut(s)	67, 73, 79, 97, 121, 183, 207, 471
BciVI	GTATCC	1 cut(s)	575
BcnI	CCSGG	2 cut(s)	442, 554
BcoDI	GTCTC	3 cut(s)	63, 147, 597
BfaI	CTAG	6 cut(s)	102, 126, 150, 498, 597, 636
BfmI	CTRYAG	1 cut(s)	610
BfoI	RGCGCY	1 cut(s)	643
BfuAI	ACCTGC	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	575
BisI	GCNGC	1 cut(s)	517
BlnI	CCTAGG	2 cut(s)	101, 635
BlsI	GCNGC	1 cut(s)	518
Bme18I	GGWCC	3 cut(s)	69, 75, 438
BmgT120I	GGNCC	4 cut(s)	69, 75, 243, 438
BmiI	GGNNCC	2 cut(s)	440, 551
BmsI	GCATC	3 cut(s)	181, 336, 361
Bpu10I	CCTNAGC	1 cut(s)	562
BpuMI	CCSGG	2 cut(s)	442, 554
BsaBI	GATNNNNATC	1 cut(s)	115
BsaI	GGTCTC	2 cut(s)	147, 597
BsaJI	CCNNGG	8 cut(s)	101, 131, 334, 455, 470, 511, 553, 635
Bsc4I	CCNNNNNNNGG	7 cut(s)	72, 78, 102, 126, 470, 614, 653
Bse1I	ACTGG	2 cut(s)	232, 400
Bse8I	GATNNNNATC	1 cut(s)	115
BseBI	CCWGG	8 cut(s)	67, 73, 79, 97, 121, 183, 207, 471
BseDI	CCNNGG	8 cut(s)	101, 131, 334, 455, 470, 511, 553, 635
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	115
BseLI	CCNNNNNNNGG	7 cut(s)	72, 78, 102, 126, 470, 614, 653
BseMII	CTCAG	3 cut(s)	68, 261, 576
BseNI	ACTGG	2 cut(s)	232, 400
Bsh1236I	CGCG	1 cut(s)	519
Bsh1285I	CGRYCG	1 cut(s)	523
BshFI	GGCC	5 cut(s)	100, 130, 245, 417, 516
BshNI	GGYRCC	1 cut(s)	549
BsiEI	CGRYCG	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	442, 553
BslFI	GGGAC	2 cut(s)	424, 515
BslI	CCNNNNNNNGG	7 cut(s)	72, 78, 102, 126, 470, 614, 653
BsmAI	GTCTC	3 cut(s)	63, 147, 597
BsmFI	GGGAC	2 cut(s)	424, 515
BsnI	GGCC	5 cut(s)	100, 130, 245, 417, 516
Bso31I	GGTCTC	2 cut(s)	147, 597
Bsp1286I	GDGCHC	2 cut(s)	55, 563
Bsp143I	GATC	5 cut(s)	110, 116, 170, 538, 662
BspACI	CCGC	4 cut(s)	5, 379, 517, 654
BspANI	GGCC	5 cut(s)	100, 130, 245, 417, 516
BspCNI	CTCAG	3 cut(s)	67, 260, 575
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	2 cut(s)	440, 551
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	2 cut(s)	111, 165
BspT107I	GGYRCC	1 cut(s)	549
BspTNI	GGTCTC	2 cut(s)	147, 597
BsrBI	CCGCTC	1 cut(s)	379
BsrI	ACTGG	2 cut(s)	232, 400
BssECI	CCNNGG	8 cut(s)	101, 131, 334, 455, 470, 511, 553, 635
BssMI	GATC	5 cut(s)	110, 116, 170, 538, 662
BssT1I	CCWWGG	3 cut(s)	101, 455, 635
Bst2UI	CCWGG	8 cut(s)	67, 73, 79, 97, 121, 183, 207, 471
Bst4CI	ACNGT	5 cut(s)	430, 512, 524, 530, 536
BstDEI	CTNAG	3 cut(s)	54, 247, 562
BstDSI	CCRYGG	2 cut(s)	334, 511
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	519
BstH2I	RGCGCY	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	642
BstKTI	GATC	5 cut(s)	113, 119, 173, 541, 665
BstMAI	GTCTC	3 cut(s)	63, 147, 597
BstMBI	GATC	5 cut(s)	110, 116, 170, 538, 662
BstMCI	CGRYCG	1 cut(s)	523
BstNI	CCWGG	8 cut(s)	67, 73, 79, 97, 121, 183, 207, 471
BstSFI	CTRYAG	1 cut(s)	610
BstUI	CGCG	1 cut(s)	519
BstX2I	RGATCY	2 cut(s)	116, 170
BstYI	RGATCY	2 cut(s)	116, 170
BsuI	GTATCC	1 cut(s)	575
BsuRI	GGCC	5 cut(s)	100, 130, 245, 417, 516
BtgI	CCRYGG	2 cut(s)	334, 511
BtsCI	GGATG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	642
Cfr13I	GGNCC	4 cut(s)	69, 75, 243, 438
CseI	GACGC	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	550, 712
CviAII	CATG	2 cut(s)	45, 297
CviJI	RGCY	9 cut(s)	53, 100, 130, 245, 293, 417, 516, 561, 717
CviKI_1	RGCY	9 cut(s)	53, 100, 130, 245, 293, 417, 516, 561, 717
CviQI	GTAC	2 cut(s)	550, 712
DdeI	CTNAG	3 cut(s)	54, 247, 562
DpnI	GATC	5 cut(s)	112, 118, 172, 540, 664
DpnII	GATC	5 cut(s)	110, 116, 170, 538, 662
EaeI	YGGCCR	1 cut(s)	514
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	3 cut(s)	101, 455, 635
Eco147I	AGGCCT	1 cut(s)	100
Eco24I	GRGCYC	2 cut(s)	55, 563
Eco31I	GGTCTC	2 cut(s)	147, 597
Eco47I	GGWCC	3 cut(s)	69, 75, 438
Eco53kI	GAGCTC	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	53
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoO109I	RGGNCCY	2 cut(s)	243, 438
EcoRII	CCWGG	8 cut(s)	65, 71, 77, 95, 119, 181, 205, 469
EcoT14I	CCWWGG	3 cut(s)	101, 455, 635
EcoT38I	GRGCYC	2 cut(s)	55, 563
ErhI	CCWWGG	3 cut(s)	101, 455, 635
FaeI	CATG	2 cut(s)	48, 300
FaiI	YATR	9 cut(s)	46, 86, 92, 222, 298, 425, 579, 651, 693
FaqI	GGGAC	2 cut(s)	424, 515
FatI	CATG	2 cut(s)	44, 296
Fnu4HI	GCNGC	1 cut(s)	517
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	2 cut(s)	55, 563
Fsp4HI	GCNGC	1 cut(s)	517
FspBI	CTAG	6 cut(s)	102, 126, 150, 498, 597, 636
GlaI	GCGC	1 cut(s)	641
GluI	GCNGC	1 cut(s)	517
HaeII	RGCGCY	1 cut(s)	643
HaeIII	GGCC	5 cut(s)	100, 130, 245, 417, 516
HapII	CCGG	2 cut(s)	442, 553
HgaI	GACGC	1 cut(s)	609
HhaI	GCGC	1 cut(s)	642
Hin1II	CATG	2 cut(s)	48, 300
Hin6I	GCGC	1 cut(s)	640
HinP1I	GCGC	1 cut(s)	640
HinfI	GANTC	5 cut(s)	8, 202, 359, 460, 503
HpaII	CCGG	2 cut(s)	442, 553
HphI	GGTGA	1 cut(s)	678
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	3 cut(s)	250, 485, 508
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	6 cut(s)	48, 180, 247, 355, 407, 663
HpyCH4III	ACNGT	5 cut(s)	430, 512, 524, 530, 536
HpyCH4IV	ACGT	2 cut(s)	31, 258
HpyCH4V	TGCA	2 cut(s)	374, 384
HpyF3I	CTNAG	3 cut(s)	54, 247, 562
HpySE526I	ACGT	2 cut(s)	31, 258
Hsp92II	CATG	2 cut(s)	48, 300
HspAI	GCGC	1 cut(s)	640
KpnI	GGTACC	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	110, 116, 170, 538, 662
LmnI	GCTCC	1 cut(s)	608
LweI	GCATC	3 cut(s)	181, 336, 361
MaeI	CTAG	6 cut(s)	102, 126, 150, 498, 597, 636
MaeII	ACGT	2 cut(s)	31, 258
MaeIII	GTNAC	4 cut(s)	223, 349, 524, 530
MalI	GATC	5 cut(s)	112, 118, 172, 540, 664
MbiI	CCGCTC	1 cut(s)	379
MboI	GATC	5 cut(s)	110, 116, 170, 538, 662
MboII	GAAGA	4 cut(s)	33, 380, 502, 672
MflI	RGATCY	2 cut(s)	116, 170
MhlI	GDGCHC	2 cut(s)	55, 563
MlyI	GAGTC	2 cut(s)	454, 497
MmeI	TCCRAC	1 cut(s)	488
MseI	TTAA	2 cut(s)	387, 396
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	2 cut(s)	442, 553
MvaI	CCWGG	8 cut(s)	67, 73, 79, 97, 121, 183, 207, 471
MvnI	CGCG	1 cut(s)	519
NciI	CCSGG	2 cut(s)	442, 554
NdeII	GATC	5 cut(s)	110, 116, 170, 538, 662
NlaIII	CATG	2 cut(s)	48, 300
NlaIV	GGNNCC	2 cut(s)	440, 551
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	3 cut(s)	223, 524, 530
PceI	AGGCCT	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	8, 202, 359
PflMI	CCANNNNNTGG	1 cut(s)	470
PfoI	TCCNGGA	3 cut(s)	181, 205, 440
PkrI	GCNGC	1 cut(s)	518
PleI	GAGTC	2 cut(s)	454, 497
PpsI	GAGTC	2 cut(s)	454, 497
PpuMI	RGGWCCY	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	438
Psp6I	CCWGG	8 cut(s)	65, 71, 77, 95, 119, 181, 205, 469
PspGI	CCWGG	8 cut(s)	65, 71, 77, 95, 119, 181, 205, 469
PspN4I	GGNNCC	2 cut(s)	440, 551
PspPI	GGNCC	4 cut(s)	69, 75, 243, 438
PspPPI	RGGWCCY	1 cut(s)	438
PsuI	RGATCY	2 cut(s)	116, 170
RsaI	GTAC	2 cut(s)	551, 713
RsaNI	GTAC	2 cut(s)	550, 712
RseI	CAYNNNNRTG	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	387, 396
SatI	GCNGC	1 cut(s)	517
Sau3AI	GATC	5 cut(s)	110, 116, 170, 538, 662
Sau96I	GGNCC	4 cut(s)	69, 75, 243, 438
SchI	GAGTC	2 cut(s)	454, 497
SduI	GDGCHC	2 cut(s)	55, 563
SfaNI	GCATC	3 cut(s)	181, 336, 361
SfcI	CTRYAG	1 cut(s)	610
SinI	GGWCC	3 cut(s)	69, 75, 438
SmiMI	CAYNNNNRTG	1 cut(s)	428
SseBI	AGGCCT	1 cut(s)	100
SsiI	CCGC	4 cut(s)	5, 379, 517, 654
SspMI	CTAG	6 cut(s)	102, 126, 150, 498, 597, 636
SstI	GAGCTC	1 cut(s)	55
StuI	AGGCCT	1 cut(s)	100
StyI	CCWWGG	3 cut(s)	101, 455, 635
TaaI	ACNGT	5 cut(s)	430, 512, 524, 530, 536
TaiI	ACGT	2 cut(s)	34, 261
TaqI	TCGA	1 cut(s)	568
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	3 cut(s)	8, 202, 359
Tru1I	TTAA	2 cut(s)	387, 396
Tru9I	TTAA	2 cut(s)	387, 396
TseFI	GTSAC	3 cut(s)	223, 524, 530
Tsp45I	GTSAC	3 cut(s)	223, 524, 530
TspDTI	ATGAA	3 cut(s)	33, 285, 381
Van91I	CCANNNNNTGG	1 cut(s)	470
VpaK11BI	GGWCC	3 cut(s)	69, 75, 438
XagI	CCTNNNNNAGG	1 cut(s)	124
XbaI	TCTAGA	1 cut(s)	149
XmaJI	CCTAGG	2 cut(s)	101, 635
XspI	CTAG	6 cut(s)	102, 126, 150, 498, 597, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.