Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01079

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Forward (+)

272070 .. 278876

Gene Structure 6807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCCAACATCACCACGAAGGTCTGCTTCACCACAGACCTCTGTCTCACCTGTCAAAGGCCGCCGATCGAGATCATTGTCGAGGTCTAGAAGGAGTCGTTCTAGGAGCCCATCTGTGGATGCAACCAATCCTGGAAACAACGTGTATGTAACAGGCTTATCCACAAGGGTTACCTCTGCTGATGTTGAGAAATTCTTTAACAAAGAAGGCAAGGTGTTGGAGTGCCATCTTGTAACTGACCCTCGCTCCAGAGAATCTCGTGGATTTGCATTTGTCACAATGGAAACTGTAGAGGATGCAGAGCGATGCATTAAGTACTTGAATCGTTCTGTGCTTGAAGGTCGACTAGTCACTGTGGAAAAGAAGAAGAGGTGGAGAAGAAGACCCAGCAGCAACAATAACCACAACAACAAGGAGTGCTGCAGGTCAGGTTGGTGCCCAGAACCTGCAACCTCAATCTCCTCCGACTTCAATCGCTGCTCAGAATGGTCTGGGATGCCTCCGGCCTCTGTCCGGCAAGCCCCGAGCCACCATCACAGACTGAAACGCTGCAAAAGCGTCGACGTCCACACTTTAGTGAAGTGCGGATGTCCGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

199

Amino Acids

22.46

Weight (kDa)

10.37

Isoelectric Point (pI)

90.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	48 - 117	7.2e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	567
Acc36I	ACCTGC	2 cut(s)	414, 454
AccB1I	GGYRCC	1 cut(s)	435
AccI	GTMKAC	2 cut(s)	343, 561
AciI	CCGC	3 cut(s)	61, 585, 593
AcsI	RAATTY	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	564
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	3 cut(s)	56, 115, 513
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	322, 338, 472
AhlI	ACTAGT	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	130
AleI	CACNNNNGTG	1 cut(s)	575
Alw26I	GTCTC	1 cut(s)	49
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	1 cut(s)	523
AoxI	GGCC	2 cut(s)	58, 504
ApeKI	GCWGC	4 cut(s)	390, 420, 477, 549
ApoI	RAATTY	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	3, 21, 39
AvaI	CYCGRG	1 cut(s)	523
BaeGI	GKGCMC	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	110
BauI	CACGAG	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	388
BbvI	GCAGC	4 cut(s)	402, 407, 464, 536
BccI	CCATC	3 cut(s)	118, 234, 540
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	49
BcuI	ACTAGT	1 cut(s)	346
BfaI	CTAG	3 cut(s)	87, 102, 347
BfmI	CTRYAG	3 cut(s)	288, 421, 596
BfuAI	ACCTGC	2 cut(s)	414, 454
BisI	GCNGC	5 cut(s)	61, 391, 421, 478, 550
BlsI	GCNGC	5 cut(s)	62, 392, 422, 479, 551
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	107, 437
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	4 cut(s)	109, 286, 296, 486
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	388
BpmI	CTGGAG	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	564
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 115, 513
Bse8I	GATNNNNATC	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	132
BseGI	GGATG	4 cut(s)	124, 301, 501, 593
BseJI	GATNNNNATC	1 cut(s)	70
BseLI	CCNNNNNNNGG	3 cut(s)	56, 115, 513
BseMII	CTCAG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	451
BseSI	GKGCMC	1 cut(s)	440
BseXI	GCAGC	4 cut(s)	402, 407, 464, 536
BseYI	CCCAGC	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	60, 506
BshNI	GGYRCC	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	523
BsiSI	CCGG	2 cut(s)	503, 514
BslI	CCNNNNNNNGG	3 cut(s)	56, 115, 513
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	60, 506
BsoBI	CYCGRG	1 cut(s)	523
Bsp1286I	GDGCHC	2 cut(s)	110, 440
Bsp143I	GATC	2 cut(s)	65, 71
BspACI	CCGC	3 cut(s)	61, 585, 593
BspANI	GGCC	2 cut(s)	60, 506
BspCNI	CTCAG	1 cut(s)	494
BspLI	GGNNCC	2 cut(s)	107, 437
BspMAI	CTGCAG	1 cut(s)	425
BspMI	ACCTGC	2 cut(s)	414, 454
BspT107I	GGYRCC	1 cut(s)	435
BssMI	GATC	2 cut(s)	65, 71
BssNI	GRCGYC	1 cut(s)	564
BssSI	CACGAG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	289, 355
Bst6I	CTCTTC	1 cut(s)	362
BstACI	GRCGYC	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	1 cut(s)	481
BstEII	GGTNACC	1 cut(s)	169
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	4 cut(s)	124, 301, 501, 593
BstKTI	GATC	2 cut(s)	68, 74
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	65, 71
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	555
BstNI	CCWGG	1 cut(s)	132
BstPAI	GACNNNNGTC	1 cut(s)	41
BstPI	GGTNACC	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	3 cut(s)	288, 421, 596
BstSLI	GKGCMC	1 cut(s)	440
BstV1I	GCAGC	4 cut(s)	402, 407, 464, 536
BstV2I	GAAGAC	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	60, 506
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	4 cut(s)	124, 301, 501, 593
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	2 cut(s)	414, 454
Cac8I	GCNNGC	1 cut(s)	519
CaiI	CAGNNNCTG	1 cut(s)	446
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	1 cut(s)	316
CviJI	RGCY	6 cut(s)	60, 108, 156, 506, 521, 528
CviKI_1	RGCY	6 cut(s)	60, 108, 156, 506, 521, 528
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	481
DpnI	GATC	2 cut(s)	67, 73
DpnII	GATC	2 cut(s)	65, 71
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	523
Eco91I	GGTNACC	1 cut(s)	169
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO65I	GGTNACC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	110
FaiI	YATR	1 cut(s)	147
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FblI	GTMKAC	2 cut(s)	343, 561
Fnu4HI	GCNGC	5 cut(s)	61, 391, 421, 478, 550
FokI	GGATG	3 cut(s)	131, 308, 508
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	5 cut(s)	61, 391, 421, 478, 550
FspBI	CTAG	3 cut(s)	87, 102, 347
GluI	GCNGC	5 cut(s)	61, 391, 421, 478, 550
GsaI	CCCAGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	60, 506
HapII	CCGG	2 cut(s)	503, 514
HgaI	GACGC	1 cut(s)	547
Hin1I	GRCGYC	1 cut(s)	564
HincII	GTYRAC	2 cut(s)	344, 562
HindII	GTYRAC	2 cut(s)	344, 562
HinfI	GANTC	3 cut(s)	94, 254, 322
HpaII	CCGG	2 cut(s)	503, 514
HphI	GGTGA	3 cut(s)	3, 21, 39
Hpy166II	GTNNAC	3 cut(s)	344, 562, 568
Hpy188I	TCNGA	2 cut(s)	466, 484
Hpy188III	TCNNGA	3 cut(s)	69, 87, 249
Hpy8I	GTNNAC	3 cut(s)	344, 562, 568
Hpy99I	CGWCG	2 cut(s)	563, 566
HpyAV	CCTTC	4 cut(s)	12, 84, 200, 332
HpyCH4III	ACNGT	2 cut(s)	289, 355
HpyCH4IV	ACGT	2 cut(s)	141, 564
HpyCH4V	TGCA	7 cut(s)	122, 269, 299, 309, 423, 449, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	555
HpyF3I	CTNAG	1 cut(s)	481
HpySE526I	ACGT	2 cut(s)	141, 564
Hsp92I	GRCGYC	1 cut(s)	564
Kzo9I	GATC	2 cut(s)	65, 71
LmnI	GCTCC	2 cut(s)	105, 251
Lsp1109I	GCAGC	4 cut(s)	402, 407, 464, 536
LweI	GCATC	4 cut(s)	109, 286, 296, 486
MaeI	CTAG	3 cut(s)	87, 102, 347
MaeII	ACGT	2 cut(s)	141, 564
MaeIII	GTNAC	5 cut(s)	148, 169, 232, 274, 349
MalI	GATC	2 cut(s)	67, 73
MboI	GATC	2 cut(s)	65, 71
MboII	GAAGA	4 cut(s)	376, 379, 390, 393
MhlI	GDGCHC	2 cut(s)	110, 440
MluCI	AATT	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	2 cut(s)	198, 489
Mph1103I	ATGCAT	1 cut(s)	311
MseI	TTAA	2 cut(s)	198, 312
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	595
MspI	CCGG	2 cut(s)	503, 514
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	555
NdeII	GATC	2 cut(s)	65, 71
NlaIV	GGNNCC	2 cut(s)	107, 437
NmuCI	GTSAC	2 cut(s)	274, 349
NsiI	ATGCAT	1 cut(s)	311
OliI	CACNNNNGTG	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	254, 322
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	5 cut(s)	62, 392, 422, 479, 551
Ple19I	CGATCG	1 cut(s)	68
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PshAI	GACNNNNGTC	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	130
PspEI	GGTNACC	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	107, 437
PstI	CTGCAG	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	446
PvuI	CGATCG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	575
SalI	GTCGAC	2 cut(s)	342, 560
SaqAI	TTAA	2 cut(s)	198, 312
SatI	GCNGC	5 cut(s)	61, 391, 421, 478, 550
Sau3AI	GATC	2 cut(s)	65, 71
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	110, 440
SfaNI	GCATC	4 cut(s)	109, 286, 296, 486
SfcI	CTRYAG	3 cut(s)	288, 421, 596
SgrDI	CGTCGACG	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	575
SpeI	ACTAGT	1 cut(s)	346
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	3 cut(s)	61, 585, 593
SspMI	CTAG	3 cut(s)	87, 102, 347
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	289, 355
TaiI	ACGT	2 cut(s)	144, 567
TaqI	TCGA	4 cut(s)	68, 80, 343, 561
TasI	AATT	1 cut(s)	191
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	254, 322
Tru1I	TTAA	2 cut(s)	198, 312
Tru9I	TTAA	2 cut(s)	198, 312
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	274, 349
TseI	GCWGC	4 cut(s)	390, 420, 477, 549
Tsp45I	GTSAC	2 cut(s)	274, 349
TspRI	CASTG	1 cut(s)	358
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	191
XbaI	TCTAGA	1 cut(s)	86
XmiI	GTMKAC	2 cut(s)	343, 561
XspI	CTAG	3 cut(s)	87, 102, 347
ZraI	GACGTC	1 cut(s)	565
ZrmI	AGTACT	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.