AT5G39580

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
15847065 .. 15849141
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39580.2

Sequence Viewer

Length: 960 bp
ATGGGCTTGGTCCGATCATTTGCTTTGGTCATAGTCTTCCTTAGTTGTCTCATCGCCGTTTATGGCCAAGGTACGAGGATCGGGTTCTACTCGACTACGTGCCCTAATGCCGAGACAATTGTTCGGACCACTGTGGCATCTCACTTTGGTTCAGATCCAAAGGTTGCACCCGGGTTACTGAGAATGCACAACCATGATTGCTTTGTCCAAGGTTGTGATGGTTCGGTGCTTTTATCGGGACCTAACTCTGAAAGAACCGCTGGCGCAAACGTTAACCTCCATGGTTTTGAGGTCATTGACGATGCCAAGAGGCAGCTCGAGGCAGCATGTCCTGGTGTTGTCTCTTGTGCTGATATCTTGGCCTTAGCGGCTCGTGATTCGGTTTCTCTCACAAACGGACAAAGTTGGCAAGTTCCAACAGGACGTAGAGATGGAAGAGTTTCCTTGGCATCGAACGTTAACAATCTTCCTTCTCCAAGTGACTCTCTAGCCATTCAACAAAGGAAATTCTCCGCTTTTCGCCTCAACACTCGCGATCTCGTCACTCTTGTTGGAGGAGGACACACGATCGGAACAGCTGCATGTGGGTTTATCACGAACAGGATATTCAACTCGAGCGGAAACACAGCAGATCCAACAATGGACCAAACATTTGTACCACAACTTCAAAGACTTTGTCCCCAAAACGGCGACGGATCAGCACGTGTTGATCTTGACACCGGAAGTGGAAACACTTTTGACACATCTTATTTCATCAATCTCAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGACTAGTCCGGCCACAAGATCCATAGTGCAAGAGTTTATGGCACCTAGAGGCAACTTCAATGTCCAGTTCGCAAGGTCAATGGTTAAAATGAGTAATATTGGTGTGAAGACGGGGACAAATGGAGAAATTCGTAGGGTTTGCTCTGCGGTTAATTAA

Protein Analysis

319

Amino Acids

34.13

Weight (kDa)

8.81

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 210 5.3e-56 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 844
AccBSI CCGCTC 1 cut(s) 618
AccII CGCG 1 cut(s) 534
AciI CCGC 5 cut(s) 258, 368, 513, 618, 950
AclI AACGTT 2 cut(s) 270, 456
AclWI GGATC 5 cut(s) 86, 149, 626, 703, 816
AcoI YGGCCR 2 cut(s) 64, 813
AcsI RAATTY 3 cut(s) 506, 777, 930
AcvI CACGTG 1 cut(s) 704
AfaI GTAC 2 cut(s) 73, 657
AfiI CCNNNNNNNGG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 703
AgsI TTSAA 5 cut(s) 497, 610, 668, 785, 862
AhlI ACTAGT 1 cut(s) 806
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 316, 578
AluI AGCT 2 cut(s) 316, 578
Alw26I GTCTC 3 cut(s) 53, 107, 346
AlwI GGATC 5 cut(s) 86, 149, 626, 703, 816
Ama87I CYCGRG 3 cut(s) 170, 317, 613
AoxI GGCC 3 cut(s) 64, 360, 813
ApeKI GCWGC 3 cut(s) 313, 323, 578
ApoI RAATTY 3 cut(s) 506, 777, 930
ArsI GACNNNNNNTTYG 4 cut(s) 635, 661, 667, 693
Asp700I GAANNNNTTC 1 cut(s) 439
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 4 cut(s) 10, 126, 239, 643
AsuC2I CCSGG 2 cut(s) 171, 172
AvaI CYCGRG 3 cut(s) 170, 317, 613
AvaII GGWCC 4 cut(s) 10, 126, 239, 643
BaeGI GKGCMC 1 cut(s) 104
BaeI ACNNNNGTAYC 2 cut(s) 639, 672
BalI TGGCCA 1 cut(s) 66
BanI GGYRCC 1 cut(s) 844
BarI GAAGNNNNNNTAC 2 cut(s) 648, 680
BauI CACGAG 1 cut(s) 372
BbrPI CACGTG 1 cut(s) 704
BbsI GAAGAC 2 cut(s) 28, 917
BbvI GCAGC 3 cut(s) 325, 335, 565
BccI CCATC 2 cut(s) 212, 425
BceAI ACGGC 3 cut(s) 41, 703, 750
BciT130I CCWGG 1 cut(s) 333
BcnI CCSGG 2 cut(s) 171, 172
BcoDI GTCTC 3 cut(s) 53, 107, 346
BcuI ACTAGT 1 cut(s) 806
BfaI CTAG 3 cut(s) 488, 807, 849
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 4 cut(s) 314, 324, 369, 579
BlsI GCNGC 4 cut(s) 315, 325, 370, 580
Bme1390I CCNGG 3 cut(s) 171, 172, 333
Bme18I GGWCC 4 cut(s) 10, 126, 239, 643
BmeT110I CYCGRG 3 cut(s) 170, 317, 613
BmgT120I GGNCC 4 cut(s) 10, 126, 239, 643
BmiI GGNNCC 2 cut(s) 240, 846
BmrFI CCNGG 3 cut(s) 171, 172, 333
BmsI GCATC 3 cut(s) 146, 292, 458
BpiI GAAGAC 2 cut(s) 28, 917
Bpu10I CCTNAGC 1 cut(s) 364
BpuMI CCSGG 2 cut(s) 171, 172
BsaAI YACGTR 2 cut(s) 99, 704
BsaJI CCNNGG 5 cut(s) 67, 170, 208, 280, 444
BsaWI WCCGGW 1 cut(s) 719
Bsc4I CCNNNNNNNGG 1 cut(s) 686
Bse1I ACTGG 1 cut(s) 868
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 5 cut(s) 67, 170, 208, 280, 444
BseLI CCNNNNNNNGG 1 cut(s) 686
BseMII CTCAG 2 cut(s) 170, 775
BseNI ACTGG 1 cut(s) 868
BseRI GAGGAG 1 cut(s) 570
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 3 cut(s) 325, 335, 565
Bsh1236I CGCG 1 cut(s) 534
Bsh1285I CGRYCG 1 cut(s) 570
BshFI GGCC 3 cut(s) 66, 362, 815
BshNI GGYRCC 1 cut(s) 844
BsiEI CGRYCG 1 cut(s) 570
BsiHKCI CYCGRG 3 cut(s) 170, 317, 613
BsiSI CCGG 3 cut(s) 171, 720, 812
BslFI GGGAC 3 cut(s) 252, 663, 931
BslI CCNNNNNNNGG 1 cut(s) 686
BsmAI GTCTC 3 cut(s) 53, 107, 346
BsmFI GGGAC 3 cut(s) 252, 663, 931
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 3 cut(s) 66, 362, 815
BsoBI CYCGRG 3 cut(s) 170, 317, 613
Bsp1286I GDGCHC 1 cut(s) 104
Bsp19I CCATGG 1 cut(s) 280
Bsp68I TCGCGA 1 cut(s) 534
BspACI CCGC 5 cut(s) 258, 368, 513, 618, 950
BspANI GGCC 3 cut(s) 66, 362, 815
BspCNI CTCAG 2 cut(s) 171, 774
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 240, 846
BspPI GGATC 5 cut(s) 86, 149, 626, 703, 816
BspT107I GGYRCC 1 cut(s) 844
BsrBI CCGCTC 1 cut(s) 618
BsrI ACTGG 1 cut(s) 868
BssECI CCNNGG 5 cut(s) 67, 170, 208, 280, 444
BssSI CACGAG 1 cut(s) 372
BssT1I CCWWGG 4 cut(s) 67, 208, 280, 444
Bst2BI CACGAG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 430
BstBAI YACGTR 2 cut(s) 99, 704
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 4 cut(s) 41, 179, 364, 761
BstDSI CCRYGG 1 cut(s) 280
BstFNI CGCG 1 cut(s) 534
BstHHI GCGC 1 cut(s) 266
BstMAI GTCTC 3 cut(s) 53, 107, 346
BstMCI CGRYCG 1 cut(s) 570
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 2 cut(s) 330, 585
BstSCI CCNGG 3 cut(s) 169, 170, 331
BstSFI CTRYAG 2 cut(s) 35, 972
BstSLI GKGCMC 1 cut(s) 104
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 3 cut(s) 325, 335, 565
BstV2I GAAGAC 2 cut(s) 28, 917
BstX2I RGATCY 3 cut(s) 154, 631, 821
BstYI RGATCY 3 cut(s) 154, 631, 821
BsuRI GGCC 3 cut(s) 66, 362, 815
BtgI CCRYGG 1 cut(s) 280
BtgZI GCGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 129
BtuMI TCGCGA 1 cut(s) 534
Cac8I GCNNGC 1 cut(s) 262
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 4 cut(s) 10, 126, 239, 643
Cfr9I CCCGGG 1 cut(s) 170
Csp6I GTAC 2 cut(s) 72, 656
CviAII CATG 4 cut(s) 194, 281, 327, 582
CviJI RGCY 9 cut(s) 6, 66, 316, 362, 371, 491, 578, 765, 815
CviKI_1 RGCY 9 cut(s) 6, 66, 316, 362, 371, 491, 578, 765, 815
CviQI GTAC 2 cut(s) 72, 656
DdeI CTNAG 4 cut(s) 41, 179, 364, 761
EaeI YGGCCR 2 cut(s) 64, 813
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Eco130I CCWWGG 4 cut(s) 67, 208, 280, 444
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 4 cut(s) 10, 126, 239, 643
Eco72I CACGTG 1 cut(s) 704
Eco88I CYCGRG 3 cut(s) 170, 317, 613
EcoO109I RGGNCCY 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 777
EcoRII CCWGG 1 cut(s) 331
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 4 cut(s) 67, 208, 280, 444
ErhI CCWWGG 4 cut(s) 67, 208, 280, 444
FaeI CATG 4 cut(s) 197, 284, 330, 585
FaiI YATR 8 cut(s) 32, 63, 195, 282, 328, 583, 827, 842
FaqI GGGAC 3 cut(s) 252, 663, 931
FatI CATG 4 cut(s) 193, 280, 326, 581
Fnu4HI GCNGC 4 cut(s) 314, 324, 369, 579
Fsp4HI GCNGC 4 cut(s) 314, 324, 369, 579
FspBI CTAG 3 cut(s) 488, 807, 849
GlaI GCGC 1 cut(s) 265
GluI GCNGC 4 cut(s) 314, 324, 369, 579
HaeIII GGCC 3 cut(s) 66, 362, 815
HapII CCGG 3 cut(s) 171, 720, 812
HhaI GCGC 1 cut(s) 266
Hin1II CATG 4 cut(s) 197, 284, 330, 585
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 2 cut(s) 274, 460
HindII GTYRAC 2 cut(s) 274, 460
HinfI GANTC 2 cut(s) 377, 482
HpaI GTTAAC 2 cut(s) 274, 460
HpaII CCGG 3 cut(s) 171, 720, 812
Hpy166II GTNNAC 2 cut(s) 274, 460
Hpy188I TCNGA 6 cut(s) 14, 126, 154, 250, 572, 790
Hpy188III TCNNGA 5 cut(s) 237, 374, 533, 595, 713
Hpy8I GTNNAC 2 cut(s) 274, 460
Hpy99I CGWCG 1 cut(s) 695
HpyAV CCTTC 1 cut(s) 480
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 6 cut(s) 98, 270, 424, 456, 703, 795
HpyCH4V TGCA 4 cut(s) 167, 187, 581, 832
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 4 cut(s) 41, 179, 364, 761
HpySE526I ACGT 6 cut(s) 98, 270, 424, 456, 703, 795
Hsp92II CATG 4 cut(s) 197, 284, 330, 585
HspAI GCGC 1 cut(s) 264
KspAI GTTAAC 2 cut(s) 274, 460
LpnPI CCDG 9 cut(s) 184, 246, 318, 345, 405, 586, 733, 825, 881
Lsp1109I GCAGC 3 cut(s) 325, 335, 565
LweI GCATC 3 cut(s) 146, 292, 458
MaeI CTAG 3 cut(s) 488, 807, 849
MaeII ACGT 6 cut(s) 98, 270, 424, 456, 703, 795
MaeIII GTNAC 4 cut(s) 174, 479, 541, 767
MbiI CCGCTC 1 cut(s) 618
MboII GAAGA 5 cut(s) 28, 447, 458, 773, 922
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 3 cut(s) 154, 631, 821
MhlI GDGCHC 1 cut(s) 104
MlsI TGGCCA 1 cut(s) 66
MluCI AATT 5 cut(s) 117, 506, 777, 930, 955
MluNI TGGCCA 1 cut(s) 66
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 3 cut(s) 440, 532, 659
Mox20I TGGCCA 1 cut(s) 66
MroXI GAANNNNTTC 1 cut(s) 439
MscI TGGCCA 1 cut(s) 66
MseI TTAA 5 cut(s) 273, 459, 888, 954, 958
MslI CAYNNNNRTG 1 cut(s) 192
Msp20I TGGCCA 1 cut(s) 66
MspA1I CMGCKG 2 cut(s) 260, 578
MspI CCGG 3 cut(s) 171, 720, 812
MspR9I CCNGG 3 cut(s) 171, 172, 333
MunI CAATTG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 1 cut(s) 333
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 1 cut(s) 368
NciI CCSGG 2 cut(s) 171, 172
NcoI CCATGG 1 cut(s) 280
NlaIII CATG 4 cut(s) 197, 284, 330, 585
NlaIV GGNNCC 2 cut(s) 240, 846
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 479, 541
NruI TCGCGA 1 cut(s) 534
NspI RCATGY 2 cut(s) 330, 585
PacI TTAATTAA 1 cut(s) 958
PaeR7I CTCGAG 2 cut(s) 317, 613
PctI GAATGC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 377
PflFI GACNNNGTC 1 cut(s) 675
PkrI GCNGC 4 cut(s) 315, 325, 370, 580
Ple19I CGATCG 1 cut(s) 570
PleI GAGTC 1 cut(s) 476
PmaCI CACGTG 1 cut(s) 704
PmlI CACGTG 1 cut(s) 704
PpsI GAGTC 1 cut(s) 476
Ppu21I YACGTR 2 cut(s) 99, 704
PpuMI RGGWCCY 1 cut(s) 239
Psp1406I AACGTT 2 cut(s) 270, 456
Psp5II RGGWCCY 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 331
PspCI CACGTG 1 cut(s) 704
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 240, 846
PspPI GGNCC 4 cut(s) 10, 126, 239, 643
PspPPI RGGWCCY 1 cut(s) 239
PspXI VCTCGAGB 2 cut(s) 317, 613
PsuI RGATCY 3 cut(s) 154, 631, 821
PsyI GACNNNGTC 1 cut(s) 675
PvuI CGATCG 1 cut(s) 570
PvuII CAGCTG 1 cut(s) 578
RruI TCGCGA 1 cut(s) 534
RsaI GTAC 2 cut(s) 73, 657
RsaNI GTAC 2 cut(s) 72, 656
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 5 cut(s) 273, 459, 888, 954, 958
SatI GCNGC 4 cut(s) 314, 324, 369, 579
Sau96I GGNCC 4 cut(s) 10, 126, 239, 643
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 3 cut(s) 171, 172, 333
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 3 cut(s) 146, 292, 458
Sfr274I CTCGAG 2 cut(s) 317, 613
SinI GGWCC 4 cut(s) 10, 126, 239, 643
SlaI CTCGAG 2 cut(s) 317, 613
SmaI CCCGGG 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 317, 613
SmoI CTYRAG 2 cut(s) 317, 613
SpeI ACTAGT 1 cut(s) 806
Sse9I AATT 5 cut(s) 117, 506, 777, 930, 955
SsiI CCGC 5 cut(s) 258, 368, 513, 618, 950
SspI AATATT 1 cut(s) 901
SspMI CTAG 3 cut(s) 488, 807, 849
StyD4I CCNGG 3 cut(s) 169, 170, 331
StyI CCWWGG 4 cut(s) 67, 208, 280, 444
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 6 cut(s) 101, 273, 427, 459, 706, 798
TaqI TCGA 4 cut(s) 92, 318, 452, 614
TasI AATT 5 cut(s) 117, 506, 777, 930, 955
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 5 cut(s) 273, 459, 888, 954, 958
Tru9I TTAA 5 cut(s) 273, 459, 888, 954, 958
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 2 cut(s) 479, 541
TseI GCWGC 3 cut(s) 313, 323, 578
Tsp45I GTSAC 2 cut(s) 479, 541
TspDTI ATGAA 1 cut(s) 742
TspGWI ACGGA 2 cut(s) 411, 708
TspMI CCCGGG 1 cut(s) 170
TspRI CASTG 1 cut(s) 136
Tth111I GACNNNGTC 1 cut(s) 675
VpaK11BI GGWCC 4 cut(s) 10, 126, 239, 643
XapI RAATTY 3 cut(s) 506, 777, 930
XceI RCATGY 2 cut(s) 330, 585
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XhoI CTCGAG 2 cut(s) 317, 613
XmaI CCCGGG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 439
XspI CTAG 3 cut(s) 488, 807, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.