Rroxscaffold_3G00249550

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001187
Physical Location & Seq
Forward (+)
43340268 .. 43341700
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249550.1

Sequence Viewer

Length: 990 bp
ATGTACCAGAAGTCCCCCATTTCGATAATGTTTCTCACCTTGCTTGCCTTGGCTACCACCTTACCCAGCTTAGTGCAAAGCCAGACCACCCGTGTCGGATTCTATTCCAGTTCATGTCCTAAGGCAGAGTCCATTGTCACACAAACAGTTCAAAAGCATTTTACATCCACTCCTTCCATTGCTCCTGGATTACTGAGGATGCACTTTCATGACTGCTTTGTCCAAGGTTGTGACGCTTCTGTCCTCCTCGACGGTGCCAACACTGAAAAAACTGCTGTTCCAAACCGTGGATTGAGAGGTTGGGAAGTTATTGACGATGCAAAGACTCAGCTTGAAGCTGCATGCCCTGGTGTTGTTTCATGTGCAGACATTCTCGCCCTAGCTGCTCGCGATTCTGTCGTCTTGACCAAGGGAATTAATTGGAAGGTGCCTACCGGAAGGTTAGACGGACGAGTATCATTGGCATCCGAGACTAACAATCTGCCTGGCTTTAGGGATTCCATTGAAGTACAAAAGACGAAGTTCCAAGCATTTGGTCTCGACACTCAAGATCTTGTCACTCTTGTTGGTGGACATACTATTGGCACTTCAGCTTGCCAGTTCTTCAGGTACAGACTATATAACTTCACAACGACCGGAAATGGCGCAGACCCTACCATCAATCCTTCATTCGTTCCTCAACTACGAGCACTTTGCCCACAAGATGGTGATGCAGCCAAGCGTGTCGATTTGGACACAGGCAGCGCAGCTCGATTTGATGCAACGTTCTTTACAAATTTGAGGAATGGTCGAGGAATACTAGAGTCTGATCAAAAGTTATGGACTGATGCCTCCACAAAAAGCTTTGTCCAACGTTTCTTGGGTGTGAGAGGCTTGCAGGCATTGAACTTCAATGTAGAGTTCGGAAGGTCCATGGTGAAGATGAGTACAATCGGCCTAAAATCTGCAGATAAAGGAGAAATTCGCCGAATATGTTCTGCAATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

329

Amino Acids

35.73

Weight (kDa)

8.91

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 286 2e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 218, 239
AccB1I GGYRCC 2 cut(s) 254, 427
AccB7I CCANNNNNTGG 2 cut(s) 287, 704
AccII CGCG 1 cut(s) 390
AclI AACGTT 2 cut(s) 764, 853
AcsI RAATTY 2 cut(s) 775, 960
AcuI CTGAAG 2 cut(s) 573, 589
AfaI GTAC 4 cut(s) 5, 510, 611, 928
AfiI CCNNNNNNNGG 2 cut(s) 287, 704
AgsI TTSAA 5 cut(s) 152, 335, 506, 886, 892
AjnI CCWGG 3 cut(s) 184, 346, 484
AluBI AGCT 7 cut(s) 69, 331, 338, 383, 593, 749, 843
AluI AGCT 7 cut(s) 69, 331, 338, 383, 593, 749, 843
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 2 cut(s) 464, 542
AoxI GGCC 1 cut(s) 934
ApeKI GCWGC 5 cut(s) 338, 383, 713, 741, 746
ApoI RAATTY 2 cut(s) 775, 960
AseI ATTAAT 1 cut(s) 417
Asp700I GAANNNNTTC 1 cut(s) 973
AspLEI GCGC 2 cut(s) 647, 746
AspS9I GGNCC 1 cut(s) 909
AsuHPI GGTGA 3 cut(s) 28, 719, 928
AvaII GGWCC 1 cut(s) 909
AxyI CCTNAGG 1 cut(s) 120
BanI GGYRCC 2 cut(s) 254, 427
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 5 cut(s) 325, 370, 725, 753, 758
BccI CCATC 2 cut(s) 665, 698
BcgI CGANNNNNNTGC 2 cut(s) 675, 709
BciT130I CCWGG 3 cut(s) 186, 348, 486
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 2 cut(s) 464, 542
BfaI CTAG 2 cut(s) 380, 800
BfmI CTRYAG 1 cut(s) 945
BglII AGATCT 1 cut(s) 550
BisI GCNGC 5 cut(s) 339, 384, 714, 742, 747
BlsI GCNGC 5 cut(s) 340, 385, 715, 743, 748
Bme1390I CCNGG 3 cut(s) 186, 348, 486
Bme18I GGWCC 1 cut(s) 909
BmgT120I GGNCC 1 cut(s) 909
BmiI GGNNCC 2 cut(s) 256, 429
BmrFI CCNGG 3 cut(s) 186, 348, 486
BmsI GCATC 6 cut(s) 189, 307, 473, 700, 748, 817
BpuEI CTTGAG 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 6 cut(s) 48, 223, 286, 346, 408, 912
BsaWI WCCGGW 2 cut(s) 434, 635
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 704
Bse1I ACTGG 2 cut(s) 108, 598
Bse21I CCTNAGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 3 cut(s) 186, 348, 486
BseDI CCNNGG 6 cut(s) 48, 223, 286, 346, 408, 912
BseGI GGATG 3 cut(s) 164, 204, 464
BseLI CCNNNNNNNGG 2 cut(s) 287, 704
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 185, 341
BseNI ACTGG 2 cut(s) 108, 598
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 5 cut(s) 325, 370, 725, 753, 758
BseYI CCCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 390
Bsh1285I CGRYCG 1 cut(s) 636
BshFI GGCC 1 cut(s) 936
BshNI GGYRCC 2 cut(s) 254, 427
BsiEI CGRYCG 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 691
BsiSI CCGG 2 cut(s) 435, 636
BslI CCNNNNNNNGG 2 cut(s) 287, 704
BsmAI GTCTC 2 cut(s) 464, 542
BsnI GGCC 1 cut(s) 936
Bso31I GGTCTC 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 691
Bsp143I GATC 2 cut(s) 550, 808
Bsp19I CCATGG 1 cut(s) 912
Bsp68I TCGCGA 1 cut(s) 390
BspANI GGCC 1 cut(s) 936
BspCNI CTCAG 2 cut(s) 186, 340
BspFNI CGCG 1 cut(s) 390
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 256, 429
BspMAI CTGCAG 1 cut(s) 949
BspT107I GGYRCC 2 cut(s) 254, 427
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 2 cut(s) 108, 598
BssECI CCNNGG 6 cut(s) 48, 223, 286, 346, 408, 912
BssMI GATC 2 cut(s) 550, 808
BssT1I CCWWGG 4 cut(s) 48, 223, 408, 912
Bst2UI CCWGG 3 cut(s) 186, 348, 486
Bst4CI ACNGT 3 cut(s) 148, 254, 287
BstC8I GCNNGC 6 cut(s) 45, 343, 388, 595, 875, 879
BstDEI CTNAG 4 cut(s) 70, 120, 194, 327
BstDSI CCRYGG 2 cut(s) 286, 912
BstF5I GGATG 3 cut(s) 164, 204, 464
BstFNI CGCG 1 cut(s) 390
BstHHI GCGC 2 cut(s) 647, 746
BstKTI GATC 2 cut(s) 553, 811
BstMAI GTCTC 2 cut(s) 464, 542
BstMBI GATC 2 cut(s) 550, 808
BstMCI CGRYCG 1 cut(s) 636
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 3 cut(s) 186, 348, 486
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 184, 346, 484
BstSFI CTRYAG 1 cut(s) 945
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 5 cut(s) 325, 370, 725, 753, 758
BstX2I RGATCY 1 cut(s) 550
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 1 cut(s) 550
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 1 cut(s) 936
BtgI CCRYGG 2 cut(s) 286, 912
BtsCI GGATG 3 cut(s) 164, 204, 464
BtsIMutI CAGTG 1 cut(s) 261
BtuMI TCGCGA 1 cut(s) 390
Cac8I GCNNGC 6 cut(s) 45, 343, 388, 595, 875, 879
CciI TCATGA 1 cut(s) 208
CfoI GCGC 2 cut(s) 647, 746
Cfr13I GGNCC 1 cut(s) 909
CseI GACGC 1 cut(s) 242
Csp6I GTAC 4 cut(s) 4, 509, 610, 927
CviAII CATG 5 cut(s) 114, 209, 342, 360, 913
CviQI GTAC 4 cut(s) 4, 509, 610, 927
DdeI CTNAG 4 cut(s) 70, 120, 194, 327
DpnI GATC 2 cut(s) 552, 810
DpnII GATC 2 cut(s) 550, 808
DrdI GACNNNNNNGTC 2 cut(s) 218, 239
DseDI GACNNNNNNGTC 2 cut(s) 218, 239
Eco130I CCWWGG 4 cut(s) 48, 223, 408, 912
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 909
Eco57I CTGAAG 2 cut(s) 573, 589
Eco81I CCTNAGG 1 cut(s) 120
EcoRII CCWGG 3 cut(s) 184, 346, 484
EcoT14I CCWWGG 4 cut(s) 48, 223, 408, 912
ErhI CCWWGG 4 cut(s) 48, 223, 408, 912
FaeI CATG 5 cut(s) 117, 212, 345, 363, 916
FatI CATG 5 cut(s) 113, 208, 341, 359, 912
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 5 cut(s) 339, 384, 714, 742, 747
FokI GGATG 3 cut(s) 151, 211, 451
Fsp4HI GCNGC 5 cut(s) 339, 384, 714, 742, 747
FspBI CTAG 2 cut(s) 380, 800
GlaI GCGC 2 cut(s) 646, 745
GluI GCNGC 5 cut(s) 339, 384, 714, 742, 747
GsaI CCCAGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 936
HapII CCGG 2 cut(s) 435, 636
HgaI GACGC 1 cut(s) 242
HhaI GCGC 2 cut(s) 647, 746
Hin1II CATG 5 cut(s) 117, 212, 345, 363, 916
Hin6I GCGC 2 cut(s) 645, 744
HinP1I GCGC 2 cut(s) 645, 744
HindIII AAGCTT 1 cut(s) 841
HinfI GANTC 6 cut(s) 99, 128, 325, 392, 497, 803
HpaII CCGG 2 cut(s) 435, 636
HphI GGTGA 3 cut(s) 28, 719, 928
Hpy166II GTNNAC 1 cut(s) 572
Hpy188I TCNGA 4 cut(s) 98, 469, 808, 905
Hpy188III TCNNGA 5 cut(s) 209, 389, 403, 539, 548
Hpy8I GTNNAC 1 cut(s) 572
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 5 cut(s) 183, 418, 432, 675, 900
HpyCH4III ACNGT 3 cut(s) 148, 254, 287
HpyCH4IV ACGT 2 cut(s) 764, 853
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 4 cut(s) 70, 120, 194, 327
HpySE526I ACGT 2 cut(s) 764, 853
Hsp92II CATG 5 cut(s) 117, 212, 345, 363, 916
HspAI GCGC 2 cut(s) 645, 744
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 2 cut(s) 550, 808
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 5 cut(s) 325, 370, 725, 753, 758
LweI GCATC 6 cut(s) 189, 307, 473, 700, 748, 817
MaeI CTAG 2 cut(s) 380, 800
MaeII ACGT 2 cut(s) 764, 853
MaeIII GTNAC 3 cut(s) 136, 230, 556
MalI GATC 2 cut(s) 552, 810
MboI GATC 2 cut(s) 550, 808
MboII GAAGA 2 cut(s) 595, 931
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 1 cut(s) 691
MluCI AATT 5 cut(s) 414, 418, 775, 960, 981
MlyI GAGTC 3 cut(s) 137, 319, 812
MmeI TCCRAC 2 cut(s) 76, 874
MnlI CCTC 9 cut(s) 189, 254, 257, 290, 687, 774, 785, 841, 863
MroXI GAANNNNTTC 1 cut(s) 973
MseI TTAA 2 cut(s) 417, 984
MslI CAYNNNNRTG 1 cut(s) 207
MspI CCGG 2 cut(s) 435, 636
MspR9I CCNGG 3 cut(s) 186, 348, 486
MvaI CCWGG 3 cut(s) 186, 348, 486
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 383
NcoI CCATGG 1 cut(s) 912
NdeII GATC 2 cut(s) 550, 808
NlaIII CATG 5 cut(s) 117, 212, 345, 363, 916
NlaIV GGNNCC 2 cut(s) 256, 429
NmuCI GTSAC 3 cut(s) 136, 230, 556
NruI TCGCGA 1 cut(s) 390
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PagI TCATGA 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 973
PfeI GAWTC 3 cut(s) 99, 392, 497
PflMI CCANNNNNTGG 2 cut(s) 287, 704
PfoI TCCNGGA 1 cut(s) 184
PkrI GCNGC 5 cut(s) 340, 385, 715, 743, 748
PleI GAGTC 3 cut(s) 136, 319, 811
PpsI GAGTC 3 cut(s) 136, 319, 811
PshBI ATTAAT 1 cut(s) 417
Psp1406I AACGTT 2 cut(s) 764, 853
Psp6I CCWGG 3 cut(s) 184, 346, 484
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 3 cut(s) 184, 346, 484
PspN4I GGNNCC 2 cut(s) 256, 429
PspPI GGNCC 1 cut(s) 909
PstI CTGCAG 1 cut(s) 949
PsuI RGATCY 1 cut(s) 550
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 4 cut(s) 5, 510, 611, 928
RsaNI GTAC 4 cut(s) 4, 509, 610, 927
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 2 cut(s) 417, 984
SatI GCNGC 5 cut(s) 339, 384, 714, 742, 747
Sau3AI GATC 2 cut(s) 550, 808
Sau96I GGNCC 1 cut(s) 909
SchI GAGTC 3 cut(s) 137, 319, 812
ScrFI CCNGG 3 cut(s) 186, 348, 486
SduI GDGCHC 1 cut(s) 691
SfaNI GCATC 6 cut(s) 189, 307, 473, 700, 748, 817
SfcI CTRYAG 1 cut(s) 945
SinI GGWCC 1 cut(s) 909
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 546
SmoI CTYRAG 1 cut(s) 546
SphI GCATGC 1 cut(s) 345
Sse9I AATT 5 cut(s) 414, 418, 775, 960, 981
SspMI CTAG 2 cut(s) 380, 800
StyD4I CCNGG 3 cut(s) 184, 346, 484
StyI CCWWGG 4 cut(s) 48, 223, 408, 912
TaaI ACNGT 3 cut(s) 148, 254, 287
TaiI ACGT 2 cut(s) 767, 856
TaqI TCGA 6 cut(s) 23, 249, 540, 726, 751, 790
TasI AATT 5 cut(s) 414, 418, 775, 960, 981
TatI WGTACW 2 cut(s) 508, 926
TfiI GAWTC 3 cut(s) 99, 392, 497
Tru1I TTAA 2 cut(s) 417, 984
Tru9I TTAA 2 cut(s) 417, 984
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 3 cut(s) 136, 230, 556
TseI GCWGC 5 cut(s) 338, 383, 713, 741, 746
Tsp45I GTSAC 3 cut(s) 136, 230, 556
TspDTI ATGAA 4 cut(s) 102, 197, 348, 657
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 268
Van91I CCANNNNNTGG 2 cut(s) 287, 704
VpaK11BI GGWCC 1 cut(s) 909
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 2 cut(s) 775, 960
XceI RCATGY 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 973
XspI CTAG 2 cut(s) 380, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.