Rroxscaffold_3G00249560

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001187
Physical Location & Seq
Forward (+)
43343912 .. 43345198
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249560.1

Sequence Viewer

Length: 990 bp
ATGTACCAGAAGTCCTCCATTTCCGTTATGTTTCTGGCCATGCTTGCCTTGGCTACCACCTTCCCTAGCTCGGTGCAAAGCCAAAGCACCCGAGTTGGATTCTATTCCAGTTCATGTCCTAAGGCAGAGTCCATTGTCACACAAACAGTTCAGAAGCATTTCACATCCACTCCTTCCATTGCTCCTGGCTTATTGAGGATGCACTTTCATGACTGCTTTGTCCAAGGTTGTGACGCTTCTGTTCTCCTCAACGGCGCAAACACTGAAAAAACCGCTGGCCCAAACCTGGGATTGAGAGGTTGGGAAGTCATTGACGATGCAAAGACTCAGCTTGAAGCTGCATGCCCTGGTGTTGTTTCATGTGCAGACATTCTCGCCCTAGCTGCTCGCGATTCTGTCGTCTTGACAAAGGGAATTAACTGGAAGGTACCTACCGGAAGGTTAGACGGACGAGTATCATTGGCATCTGAGACTAACAATCTGCCTGGCTTTAGAGATTCCGTTGATGTACAAAAGACCAAGTTTCAAACTTTTGGTCTCAACACTCAAGATCTTGTCACGCTTGTTGGTGGACACACTATTGGCACTTCAGCTTGCCAGTTCTTCAGGTACAGGCTTTACAACTTCACTACAACTGGAAATGGCGCAGACCCTACCATCAATCCTTCATTTGTTCCTCAACTACGAGCACTTTGCCCCCAAGCTGGTGATGCAGCCAAGCGTGTCGATTTGGACACCGGCAGCGCAGCTCGATTTGATGCAACATTCTTTACAAACTTAAAGAACGGCCGCGGTATACTCGAGTCTGACCAAAAGTTATGGACTGATGCCTCCACAAAAAGCCTTGTCCAACGGTTCTTGGGTGTGAGAGGTTTGCAGGCATTGAACTTCAACGTAGAGTTCGGAAGATCCATGGTGAAGATGAGTACTATCGGTGTAAAGTCTGCAACAAATGGTGAAATTCGCCGCATTTGTTCTGCAATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

329

Amino Acids

35.45

Weight (kDa)

9.14

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 286 4.3e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
Acc65I GGTACC 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 796
AccII CGCG 2 cut(s) 390, 792
AciI CCGC 4 cut(s) 273, 790, 792, 967
AclWI GGATC 1 cut(s) 903
AcoI YGGCCR 2 cut(s) 36, 787
AcsI RAATTY 1 cut(s) 960
AcuI CTGAAG 2 cut(s) 573, 589
AfaI GTAC 5 cut(s) 5, 429, 510, 611, 928
AfiI CCNNNNNNNGG 4 cut(s) 70, 286, 287, 704
AgsI TTSAA 4 cut(s) 335, 527, 886, 892
AjnI CCWGG 4 cut(s) 184, 285, 346, 484
AluBI AGCT 7 cut(s) 69, 331, 338, 383, 593, 704, 749
AluI AGCT 7 cut(s) 69, 331, 338, 383, 593, 704, 749
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 2 cut(s) 464, 542
AlwI GGATC 1 cut(s) 903
Ama87I CYCGRG 2 cut(s) 90, 800
AoxI GGCC 3 cut(s) 36, 277, 787
ApeKI GCWGC 5 cut(s) 338, 383, 713, 741, 746
ApoI RAATTY 1 cut(s) 960
ArsI GACNNNNNNTTYG 2 cut(s) 520, 552
Asp700I GAANNNNTTC 1 cut(s) 158
Asp718I GGTACC 1 cut(s) 427
AspLEI GCGC 3 cut(s) 257, 647, 746
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 3 cut(s) 719, 928, 968
AvaI CYCGRG 2 cut(s) 90, 800
AxyI CCTNAGG 1 cut(s) 120
BalI TGGCCA 1 cut(s) 38
BanI GGYRCC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 5 cut(s) 325, 370, 725, 753, 758
BccI CCATC 1 cut(s) 665
BceAI ACGGC 2 cut(s) 268, 802
BcgI CGANNNNNNTGC 2 cut(s) 675, 709
BciT130I CCWGG 4 cut(s) 186, 287, 348, 486
BcoDI GTCTC 2 cut(s) 464, 542
BfaI CTAG 2 cut(s) 66, 380
BglII AGATCT 1 cut(s) 550
BisI GCNGC 7 cut(s) 339, 384, 714, 742, 747, 790, 967
BlsI GCNGC 7 cut(s) 340, 385, 715, 743, 748, 791, 968
BmcAI AGTACT 1 cut(s) 928
Bme1390I CCNGG 4 cut(s) 186, 287, 348, 486
BmeT110I CYCGRG 2 cut(s) 90, 800
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 4 cut(s) 186, 287, 348, 486
BmsI GCATC 6 cut(s) 189, 307, 473, 700, 748, 817
BpuEI CTTGAG 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 6 cut(s) 48, 223, 286, 346, 790, 912
BsaWI WCCGGW 1 cut(s) 434
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 286, 287, 704
Bse118I RCCGGY 1 cut(s) 737
Bse1I ACTGG 4 cut(s) 108, 425, 598, 640
Bse21I CCTNAGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 4 cut(s) 186, 287, 348, 486
BseDI CCNNGG 6 cut(s) 48, 223, 286, 346, 790, 912
BseGI GGATG 2 cut(s) 164, 204
BseLI CCNNNNNNNGG 4 cut(s) 70, 286, 287, 704
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 341, 459
BseNI ACTGG 4 cut(s) 108, 425, 598, 640
BseRI GAGGAG 1 cut(s) 236
BseX3I CGGCCG 1 cut(s) 787
BseXI GCAGC 5 cut(s) 325, 370, 725, 753, 758
BsgI GTGCAG 1 cut(s) 384
Bsh1236I CGCG 2 cut(s) 390, 792
Bsh1285I CGRYCG 1 cut(s) 790
BshFI GGCC 3 cut(s) 38, 279, 789
BshNI GGYRCC 1 cut(s) 427
BsiEI CGRYCG 1 cut(s) 790
BsiHKAI GWGCWC 1 cut(s) 691
BsiHKCI CYCGRG 2 cut(s) 90, 800
BsiSI CCGG 2 cut(s) 435, 738
BslI CCNNNNNNNGG 4 cut(s) 70, 286, 287, 704
BsmAI GTCTC 2 cut(s) 464, 542
BsnI GGCC 3 cut(s) 38, 279, 789
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 2 cut(s) 90, 800
Bsp1286I GDGCHC 1 cut(s) 691
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 2 cut(s) 550, 908
Bsp19I CCATGG 1 cut(s) 912
Bsp68I TCGCGA 1 cut(s) 390
BspACI CCGC 4 cut(s) 273, 790, 792, 967
BspANI GGCC 3 cut(s) 38, 279, 789
BspCNI CTCAG 2 cut(s) 340, 460
BspFNI CGCG 2 cut(s) 390, 792
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 1 cut(s) 903
BspT107I GGYRCC 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 737
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 4 cut(s) 108, 425, 598, 640
BssAI RCCGGY 1 cut(s) 737
BssECI CCNNGG 6 cut(s) 48, 223, 286, 346, 790, 912
BssMI GATC 2 cut(s) 550, 908
BssNAI GTATAC 1 cut(s) 797
BssT1I CCWWGG 3 cut(s) 48, 223, 912
Bst1107I GTATAC 1 cut(s) 797
Bst2UI CCWGG 4 cut(s) 186, 287, 348, 486
Bst4CI ACNGT 2 cut(s) 148, 855
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 6 cut(s) 45, 277, 343, 388, 595, 879
BstDEI CTNAG 3 cut(s) 120, 327, 468
BstDSI CCRYGG 2 cut(s) 790, 912
BstF5I GGATG 2 cut(s) 164, 204
BstFNI CGCG 2 cut(s) 390, 792
BstHHI GCGC 3 cut(s) 257, 647, 746
BstKTI GATC 2 cut(s) 553, 911
BstMAI GTCTC 2 cut(s) 464, 542
BstMBI GATC 2 cut(s) 550, 908
BstMCI CGRYCG 1 cut(s) 790
BstMWI GCNNNNNNNGC 3 cut(s) 44, 383, 710
BstNI CCWGG 4 cut(s) 186, 287, 348, 486
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 4 cut(s) 184, 285, 346, 484
BstUI CGCG 2 cut(s) 390, 792
BstV1I GCAGC 5 cut(s) 325, 370, 725, 753, 758
BstX2I RGATCY 2 cut(s) 550, 908
BstYI RGATCY 2 cut(s) 550, 908
BstZ17I GTATAC 1 cut(s) 797
BstZI CGGCCG 1 cut(s) 787
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 3 cut(s) 38, 279, 789
BtgI CCRYGG 2 cut(s) 790, 912
BtsCI GGATG 2 cut(s) 164, 204
BtsIMutI CAGTG 1 cut(s) 261
BtuMI TCGCGA 1 cut(s) 390
Cac8I GCNNGC 6 cut(s) 45, 277, 343, 388, 595, 879
CciI TCATGA 1 cut(s) 208
CfoI GCGC 3 cut(s) 257, 647, 746
Cfr10I RCCGGY 1 cut(s) 737
Cfr13I GGNCC 1 cut(s) 278
Cfr42I CCGCGG 1 cut(s) 793
CseI GACGC 1 cut(s) 242
Csp6I GTAC 5 cut(s) 4, 428, 509, 610, 927
CviAII CATG 6 cut(s) 40, 114, 209, 342, 360, 913
CviQI GTAC 5 cut(s) 4, 428, 509, 610, 927
DdeI CTNAG 3 cut(s) 120, 327, 468
DpnI GATC 2 cut(s) 552, 910
DpnII GATC 2 cut(s) 550, 908
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 2 cut(s) 36, 787
EagI CGGCCG 1 cut(s) 787
EclXI CGGCCG 1 cut(s) 787
Eco130I CCWWGG 3 cut(s) 48, 223, 912
Eco31I GGTCTC 1 cut(s) 542
Eco52I CGGCCG 1 cut(s) 787
Eco57I CTGAAG 2 cut(s) 573, 589
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 2 cut(s) 90, 800
EcoRII CCWGG 4 cut(s) 184, 285, 346, 484
EcoT14I CCWWGG 3 cut(s) 48, 223, 912
ErhI CCWWGG 3 cut(s) 48, 223, 912
FaeI CATG 6 cut(s) 43, 117, 212, 345, 363, 916
FaiI YATR 9 cut(s) 29, 41, 115, 210, 343, 361, 797, 820, 914
FatI CATG 6 cut(s) 39, 113, 208, 341, 359, 912
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 7 cut(s) 339, 384, 714, 742, 747, 790, 967
FokI GGATG 2 cut(s) 151, 211
Fsp4HI GCNGC 7 cut(s) 339, 384, 714, 742, 747, 790, 967
FspBI CTAG 2 cut(s) 66, 380
GlaI GCGC 3 cut(s) 256, 646, 745
GluI GCNGC 7 cut(s) 339, 384, 714, 742, 747, 790, 967
HaeIII GGCC 3 cut(s) 38, 279, 789
HapII CCGG 2 cut(s) 435, 738
HgaI GACGC 1 cut(s) 242
HhaI GCGC 3 cut(s) 257, 647, 746
Hin1II CATG 6 cut(s) 43, 117, 212, 345, 363, 916
Hin6I GCGC 3 cut(s) 255, 645, 744
HinP1I GCGC 3 cut(s) 255, 645, 744
HinfI GANTC 6 cut(s) 99, 128, 325, 392, 497, 803
HpaII CCGG 2 cut(s) 435, 738
HphI GGTGA 3 cut(s) 719, 928, 968
Hpy166II GTNNAC 2 cut(s) 572, 797
Hpy188I TCNGA 4 cut(s) 153, 469, 808, 905
Hpy188III TCNNGA 4 cut(s) 209, 389, 403, 548
Hpy8I GTNNAC 2 cut(s) 572, 797
HpyAV CCTTC 5 cut(s) 70, 183, 418, 432, 675
HpyCH4III ACNGT 2 cut(s) 148, 855
HpyCH4IV ACGT 1 cut(s) 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 383, 710
HpyF3I CTNAG 3 cut(s) 120, 327, 468
HpySE526I ACGT 1 cut(s) 894
Hsp92II CATG 6 cut(s) 43, 117, 212, 345, 363, 916
HspAI GCGC 3 cut(s) 255, 645, 744
KpnI GGTACC 1 cut(s) 431
KspI CCGCGG 1 cut(s) 793
Kzo9I GATC 2 cut(s) 550, 908
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 5 cut(s) 325, 370, 725, 753, 758
LweI GCATC 6 cut(s) 189, 307, 473, 700, 748, 817
MaeI CTAG 2 cut(s) 66, 380
MaeII ACGT 1 cut(s) 894
MaeIII GTNAC 3 cut(s) 136, 230, 556
MalI GATC 2 cut(s) 552, 910
MboI GATC 2 cut(s) 550, 908
MboII GAAGA 3 cut(s) 595, 918, 931
MflI RGATCY 2 cut(s) 550, 908
MhlI GDGCHC 1 cut(s) 691
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 3 cut(s) 414, 960, 981
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 3 cut(s) 137, 319, 812
MmeI TCCRAC 2 cut(s) 76, 874
MnlI CCTC 7 cut(s) 25, 189, 257, 290, 687, 841, 863
Mox20I TGGCCA 1 cut(s) 38
MroXI GAANNNNTTC 1 cut(s) 158
MscI TGGCCA 1 cut(s) 38
MseI TTAA 3 cut(s) 417, 779, 984
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 2 cut(s) 275, 792
MspI CCGG 2 cut(s) 435, 738
MspR9I CCNGG 4 cut(s) 186, 287, 348, 486
MvaI CCWGG 4 cut(s) 186, 287, 348, 486
MvnI CGCG 2 cut(s) 390, 792
MwoI GCNNNNNNNGC 3 cut(s) 44, 383, 710
NcoI CCATGG 1 cut(s) 912
NdeII GATC 2 cut(s) 550, 908
NlaIII CATG 6 cut(s) 43, 117, 212, 345, 363, 916
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 3 cut(s) 136, 230, 556
NruI TCGCGA 1 cut(s) 390
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 800
PagI TCATGA 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 3 cut(s) 99, 392, 497
PkrI GCNGC 7 cut(s) 340, 385, 715, 743, 748, 791, 968
PleI GAGTC 3 cut(s) 136, 319, 811
PpsI GAGTC 3 cut(s) 136, 319, 811
Psp6I CCWGG 4 cut(s) 184, 285, 346, 484
PspGI CCWGG 4 cut(s) 184, 285, 346, 484
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 1 cut(s) 278
PspXI VCTCGAGB 1 cut(s) 800
PsuI RGATCY 2 cut(s) 550, 908
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 5 cut(s) 5, 429, 510, 611, 928
RsaNI GTAC 5 cut(s) 4, 428, 509, 610, 927
RseI CAYNNNNRTG 1 cut(s) 207
SacII CCGCGG 1 cut(s) 793
SaqAI TTAA 3 cut(s) 417, 779, 984
SatI GCNGC 7 cut(s) 339, 384, 714, 742, 747, 790, 967
Sau3AI GATC 2 cut(s) 550, 908
Sau96I GGNCC 1 cut(s) 278
ScaI AGTACT 1 cut(s) 928
SchI GAGTC 3 cut(s) 137, 319, 812
ScrFI CCNGG 4 cut(s) 186, 287, 348, 486
SduI GDGCHC 1 cut(s) 691
SfaNI GCATC 6 cut(s) 189, 307, 473, 700, 748, 817
Sfr274I CTCGAG 1 cut(s) 800
Sfr303I CCGCGG 1 cut(s) 793
SgrBI CCGCGG 1 cut(s) 793
SlaI CTCGAG 1 cut(s) 800
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 546, 800
SmoI CTYRAG 2 cut(s) 546, 800
SphI GCATGC 1 cut(s) 345
Sse9I AATT 3 cut(s) 414, 960, 981
SsiI CCGC 4 cut(s) 273, 790, 792, 967
SspMI CTAG 2 cut(s) 66, 380
StyD4I CCNGG 4 cut(s) 184, 285, 346, 484
StyI CCWWGG 3 cut(s) 48, 223, 912
TaaI ACNGT 2 cut(s) 148, 855
TaiI ACGT 1 cut(s) 897
TaqI TCGA 3 cut(s) 726, 751, 801
TasI AATT 3 cut(s) 414, 960, 981
TatI WGTACW 2 cut(s) 508, 926
TauI GCSGC 2 cut(s) 792, 969
TfiI GAWTC 3 cut(s) 99, 392, 497
Tru1I TTAA 3 cut(s) 417, 779, 984
Tru9I TTAA 3 cut(s) 417, 779, 984
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 3 cut(s) 136, 230, 556
TseI GCWGC 5 cut(s) 338, 383, 713, 741, 746
Tsp45I GTSAC 3 cut(s) 136, 230, 556
TspDTI ATGAA 4 cut(s) 102, 197, 348, 657
TspGWI ACGGA 3 cut(s) 13, 462, 490
TspRI CASTG 1 cut(s) 268
XapI RAATTY 1 cut(s) 960
XceI RCATGY 1 cut(s) 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XhoI CTCGAG 1 cut(s) 800
XmiI GTMKAC 1 cut(s) 796
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 2 cut(s) 66, 380
ZrmI AGTACT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.