pycom08g20080

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0001187
Physical Location & Seq
Forward (+)
19967913 .. 19969030
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g20080.1

Sequence Viewer

Length: 996 bp
ATGAGCTCCTCCAAAATGTTATTGATGTACTTTCTACAGCTACTTGTTGGTTTGGCTACCACCTTGGTGATGGTGCAAGGCCAGGGCAAACTTACACGAGTTGGATTCTACTCGGGTACATGTCCAGCAGCAGAGTCTATTGTCAAACAAACGGTTCAAACTCATTTCAACTCCAACCCTTCCGTTGCTCCTGGCTTGTTAAGGATGCACTTCCATGACTGCTTTGTCCAAGGTTGTGATGCTTCTGTCCTTCTTGACGGCCCTAATACTGAGAAAACCGCTGGGCCTAACCTCGGTTTAAGAGGTTGGGAAGTCATTGACGATGCAAAGACCAAGCTCGAAGCTGCATGCCCAGGAGTTGTTTCTTGTGCAGATATTCTCGCCCTCGCTGCCCGTGATTCCGTAGTTCTTACCAAAGGATTCACTTGGAATGTGCCTACTGGAAGAAAAGATGGACGAGTTTCGCTGGCCACAGAGACTAGTAATTTGCCTGGCTTTAGAGAATCGATTGATGTACAAAAGCGCAAGTTCCAAGATTTGGGTCTCAACACTCAAGATCTTTTCACGCTTGTTGGTGCACACACCATTGGCACCTCAGCATGCCAGTTCTTCGGGTACAGGCTGTATAACTTCACCAACACCGGAAATGGCGCTGACGAAACAATAAACCCTTTATTCCTTGCCCAACTAAGATCAATTTGCCCTGAAAATGGTGACACGGCGAGGCGTGTTGATTTAGACACGGGCAGCGCAAGTCGATTCGATGCAACTTTCTTCACAAATTTGAAGAATGGTCGCGGAATACTTGAGTCGGATCAGATGTTATGGACCGACGCCACCACTAAAAGTTTTGTCCAACGATTTTTGGGCGTGAGAGGCTTACAAGCATTGAATTTCAACATCGAGTTCGGAAAGTCGATGGTGAAAATGAGTAACATCGGTGTAAAATCTGCCACAAATGGTGAAATCCGCCGCATTTGTTCTGCAGTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

332

Amino Acids

35.93

Weight (kDa)

8.6

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 288 3.2e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 590
AccB7I CCANNNNNTGG 1 cut(s) 538
AccII CGCG 1 cut(s) 798
AciI CCGC 4 cut(s) 279, 798, 970, 973
AclWI GGATC 1 cut(s) 822
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 2 cut(s) 781, 892
AcyI GRCGYC 1 cut(s) 834
AfaI GTAC 4 cut(s) 29, 118, 516, 617
AfiI CCNNNNNNNGG 3 cut(s) 293, 538, 710
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 5 cut(s) 158, 169, 787, 892, 898
AhlI ACTAGT 1 cut(s) 479
AjnI CCWGG 4 cut(s) 81, 190, 352, 490
AleI CACNNNNGTG 1 cut(s) 65
AluBI AGCT 4 cut(s) 6, 40, 337, 344
AluI AGCT 4 cut(s) 6, 40, 337, 344
Alw21I GWGCWC 2 cut(s) 8, 580
Alw26I GTCTC 2 cut(s) 470, 548
Alw44I GTGCAC 1 cut(s) 576
AlwI GGATC 1 cut(s) 822
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 4 cut(s) 79, 259, 284, 468
ApaLI GTGCAC 1 cut(s) 576
ApeKI GCWGC 4 cut(s) 128, 344, 389, 747
ApoI RAATTY 2 cut(s) 781, 892
ArsI GACNNNNNNTTYG 2 cut(s) 469, 501
AspLEI GCGC 3 cut(s) 525, 653, 752
AspS9I GGNCC 3 cut(s) 260, 284, 828
AsuHPI GGTGA 5 cut(s) 79, 625, 725, 934, 974
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 828
BaeGI GKGCMC 1 cut(s) 580
BalI TGGCCA 1 cut(s) 470
BanI GGYRCC 1 cut(s) 590
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 96
Bbv12I GWGCWC 2 cut(s) 8, 580
BbvCI CCTCAGC 1 cut(s) 595
BbvI GCAGC 4 cut(s) 140, 331, 376, 759
BccI CCATC 3 cut(s) 64, 446, 913
BceAI ACGGC 2 cut(s) 274, 735
BciT130I CCWGG 4 cut(s) 83, 192, 354, 492
BcoDI GTCTC 2 cut(s) 470, 548
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 2 cut(s) 35, 984
BfoI RGCGCY 1 cut(s) 654
BglII AGATCT 1 cut(s) 556
BisI GCNGC 5 cut(s) 129, 345, 390, 748, 973
BlsI GCNGC 5 cut(s) 130, 346, 391, 749, 974
Bme1390I CCNGG 4 cut(s) 83, 192, 354, 492
Bme18I GGWCC 1 cut(s) 828
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 3 cut(s) 260, 284, 828
BmiI GGNNCC 1 cut(s) 592
BmrFI CCNGG 4 cut(s) 83, 192, 354, 492
BmsI GCATC 4 cut(s) 195, 229, 313, 754
Bpu10I CCTNAGC 1 cut(s) 595
BpuEI CTTGAG 2 cut(s) 537, 827
Bsa29I ATCGAT 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 834
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 5 cut(s) 63, 82, 229, 292, 352
BsaWI WCCGGW 1 cut(s) 641
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 538, 710
Bse1I ACTGG 2 cut(s) 445, 604
BseBI CCWGG 4 cut(s) 83, 192, 354, 492
BseCI ATCGAT 1 cut(s) 506
BseDI CCNNGG 5 cut(s) 63, 82, 229, 292, 352
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 293, 538, 710
BseMII CTCAG 2 cut(s) 261, 609
BseNI ACTGG 2 cut(s) 445, 604
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 4 cut(s) 140, 331, 376, 759
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 4 cut(s) 81, 261, 286, 470
BshNI GGYRCC 1 cut(s) 590
BshVI ATCGAT 1 cut(s) 506
BsiHKAI GWGCWC 2 cut(s) 8, 580
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 642
BslI CCNNNNNNNGG 3 cut(s) 293, 538, 710
BsmAI GTCTC 2 cut(s) 470, 548
BsnI GGCC 4 cut(s) 81, 261, 286, 470
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 8, 580
Bsp1407I TGTACA 1 cut(s) 514
Bsp143I GATC 3 cut(s) 556, 692, 814
BspACI CCGC 4 cut(s) 279, 798, 970, 973
BspANI GGCC 4 cut(s) 81, 261, 286, 470
BspCNI CTCAG 2 cut(s) 262, 608
BspDI ATCGAT 1 cut(s) 506
BspFNI CGCG 1 cut(s) 798
BspLI GGNNCC 1 cut(s) 592
BspMAI CTGCAG 1 cut(s) 988
BspPI GGATC 1 cut(s) 822
BspT107I GGYRCC 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 548
BsrGI TGTACA 1 cut(s) 514
BsrI ACTGG 2 cut(s) 445, 604
BssECI CCNNGG 5 cut(s) 63, 82, 229, 292, 352
BssMI GATC 3 cut(s) 556, 692, 814
BssNI GRCGYC 1 cut(s) 834
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 63, 229
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 4 cut(s) 83, 192, 354, 492
Bst4CI ACNGT 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 834
BstAUI TGTACA 1 cut(s) 514
BstC8I GCNNGC 3 cut(s) 349, 468, 601
BstDEI CTNAG 3 cut(s) 270, 595, 689
BstF5I GGATG 1 cut(s) 210
BstFNI CGCG 1 cut(s) 798
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 3 cut(s) 525, 653, 752
BstKTI GATC 3 cut(s) 559, 695, 817
BstMAI GTCTC 2 cut(s) 470, 548
BstMBI GATC 3 cut(s) 556, 692, 814
BstMWI GCNNNNNNNGC 2 cut(s) 389, 876
BstNI CCWGG 4 cut(s) 83, 192, 354, 492
BstNSI RCATGY 3 cut(s) 123, 351, 603
BstSCI CCNGG 4 cut(s) 81, 190, 352, 490
BstSFI CTRYAG 2 cut(s) 35, 984
BstSLI GKGCMC 1 cut(s) 580
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 4 cut(s) 140, 331, 376, 759
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
Bsu15I ATCGAT 1 cut(s) 506
BsuRI GGCC 4 cut(s) 81, 261, 286, 470
BsuTUI ATCGAT 1 cut(s) 506
BtsCI GGATG 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 349, 468, 601
CfoI GCGC 3 cut(s) 525, 653, 752
Cfr13I GGNCC 3 cut(s) 260, 284, 828
ClaI ATCGAT 1 cut(s) 506
CseI GACGC 1 cut(s) 842
Csp6I GTAC 4 cut(s) 28, 117, 515, 616
CviAII CATG 4 cut(s) 120, 215, 348, 600
CviQI GTAC 4 cut(s) 28, 117, 515, 616
DdeI CTNAG 3 cut(s) 270, 595, 689
DpnI GATC 3 cut(s) 558, 694, 816
DpnII GATC 3 cut(s) 556, 692, 814
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 468
EciI GGCGGA 1 cut(s) 959
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 63, 229
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 1 cut(s) 828
Eco53kI GAGCTC 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 4 cut(s) 81, 190, 352, 490
EcoT14I CCWWGG 2 cut(s) 63, 229
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 63, 229
FaeI CATG 4 cut(s) 123, 218, 351, 603
FaiI YATR 6 cut(s) 121, 216, 349, 601, 627, 826
FatI CATG 4 cut(s) 119, 214, 347, 599
Fnu4HI GCNGC 5 cut(s) 129, 345, 390, 748, 973
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 5 cut(s) 129, 345, 390, 748, 973
FspBI CTAG 1 cut(s) 480
GlaI GCGC 3 cut(s) 524, 652, 751
GluI GCNGC 5 cut(s) 129, 345, 390, 748, 973
GsaI CCCAGC 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 4 cut(s) 81, 261, 286, 470
HapII CCGG 1 cut(s) 642
HgaI GACGC 1 cut(s) 842
HhaI GCGC 3 cut(s) 525, 653, 752
Hin1I GRCGYC 1 cut(s) 834
Hin1II CATG 4 cut(s) 123, 218, 351, 603
Hin6I GCGC 3 cut(s) 523, 651, 750
HinP1I GCGC 3 cut(s) 523, 651, 750
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HinfI GANTC 7 cut(s) 105, 134, 398, 420, 503, 759, 809
HpaII CCGG 1 cut(s) 642
HphI GGTGA 5 cut(s) 79, 625, 725, 934, 974
Hpy166II GTNNAC 2 cut(s) 578, 991
Hpy188I TCNGA 3 cut(s) 814, 819, 911
Hpy188III TCNNGA 2 cut(s) 254, 554
Hpy8I GTNNAC 2 cut(s) 578, 991
Hpy99I CGWCG 1 cut(s) 836
HpyAV CCTTC 2 cut(s) 189, 260
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 8 cut(s) 76, 208, 326, 347, 371, 578, 767, 986
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 876
HpyF3I CTNAG 3 cut(s) 270, 595, 689
Hsp92I GRCGYC 1 cut(s) 834
Hsp92II CATG 4 cut(s) 123, 218, 351, 603
HspAI GCGC 3 cut(s) 523, 651, 750
Kzo9I GATC 3 cut(s) 556, 692, 814
LmnI GCTCC 2 cut(s) 11, 193
Lsp1109I GCAGC 4 cut(s) 140, 331, 376, 759
LweI GCATC 4 cut(s) 195, 229, 313, 754
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 2 cut(s) 713, 932
MalI GATC 3 cut(s) 558, 694, 816
MboI GATC 3 cut(s) 556, 692, 814
MboII GAAGA 4 cut(s) 456, 601, 766, 799
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 2 cut(s) 8, 580
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 4 cut(s) 484, 696, 781, 892
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 2 cut(s) 143, 818
MmeI TCCRAC 4 cut(s) 82, 198, 792, 880
MnlI CCTC 7 cut(s) 19, 296, 302, 395, 604, 717, 869
Mox20I TGGCCA 1 cut(s) 470
MscI TGGCCA 1 cut(s) 470
MseI TTAA 2 cut(s) 200, 299
MslI CAYNNNNRTG 2 cut(s) 65, 213
Msp20I TGGCCA 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 642
MspR9I CCNGG 4 cut(s) 83, 192, 354, 492
MvaI CCWGG 4 cut(s) 83, 192, 354, 492
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 2 cut(s) 389, 876
NdeII GATC 3 cut(s) 556, 692, 814
NlaIII CATG 4 cut(s) 123, 218, 351, 603
NlaIV GGNNCC 1 cut(s) 592
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 3 cut(s) 123, 351, 603
OliI CACNNNNGTG 1 cut(s) 65
PaeI GCATGC 2 cut(s) 351, 603
PciI ACATGT 1 cut(s) 119
PfeI GAWTC 5 cut(s) 105, 398, 420, 503, 759
PflMI CCANNNNNTGG 1 cut(s) 538
PkrI GCNGC 5 cut(s) 130, 346, 391, 749, 974
PleI GAGTC 2 cut(s) 142, 817
PpsI GAGTC 2 cut(s) 142, 817
PscI ACATGT 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 4 cut(s) 81, 190, 352, 490
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 4 cut(s) 81, 190, 352, 490
PspN4I GGNNCC 1 cut(s) 592
PspPI GGNCC 3 cut(s) 260, 284, 828
PstI CTGCAG 1 cut(s) 988
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 4 cut(s) 29, 118, 516, 617
RsaNI GTAC 4 cut(s) 28, 117, 515, 616
RseI CAYNNNNRTG 2 cut(s) 65, 213
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 200, 299
SatI GCNGC 5 cut(s) 129, 345, 390, 748, 973
Sau3AI GATC 3 cut(s) 556, 692, 814
Sau96I GGNCC 3 cut(s) 260, 284, 828
SchI GAGTC 2 cut(s) 143, 818
ScrFI CCNGG 4 cut(s) 83, 192, 354, 492
SduI GDGCHC 2 cut(s) 8, 580
SetI ASST 9 cut(s) 8, 42, 65, 235, 294, 307, 339, 346, 596
SfaNI GCATC 4 cut(s) 195, 229, 313, 754
SfcI CTRYAG 2 cut(s) 35, 984
SinI GGWCC 1 cut(s) 828
SmiMI CAYNNNNRTG 2 cut(s) 65, 213
SmlI CTYRAG 2 cut(s) 552, 806
SmoI CTYRAG 2 cut(s) 552, 806
SpeI ACTAGT 1 cut(s) 479
SphI GCATGC 2 cut(s) 351, 603
Sse9I AATT 4 cut(s) 484, 696, 781, 892
SsiI CCGC 4 cut(s) 279, 798, 970, 973
SspMI CTAG 1 cut(s) 480
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 81, 190, 352, 490
StyI CCWWGG 2 cut(s) 63, 229
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 6 cut(s) 339, 506, 757, 762, 903, 917
TaqII GACCGA 1 cut(s) 845
TasI AATT 4 cut(s) 484, 696, 781, 892
TatI WGTACW 2 cut(s) 27, 514
TauI GCSGC 1 cut(s) 975
TfiI GAWTC 5 cut(s) 105, 398, 420, 503, 759
Tru1I TTAA 2 cut(s) 200, 299
Tru9I TTAA 2 cut(s) 200, 299
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 4 cut(s) 128, 344, 389, 747
Tsp45I GTSAC 1 cut(s) 713
TspGWI ACGGA 2 cut(s) 172, 391
Van91I CCANNNNNTGG 1 cut(s) 538
VneI GTGCAC 1 cut(s) 576
VpaK11BI GGWCC 1 cut(s) 828
XapI RAATTY 2 cut(s) 781, 892
XceI RCATGY 3 cut(s) 123, 351, 603
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.