Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001187

Physical Location & Seq

Genomic Coordinates Reverse (-)

21238567 .. 21238857

Gene Structure 291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG240100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGTGATGCAGCAAAGCGCGCGTGTCGATTTGGACACAGGCAGTGCAGCTTTATTTGATGCAACATTCTTCAAAAACTTAGAGAATGGTCGCGGGATACTTGAGTCTGATCAAAAATTATGGACTGATGCCTCCACAAAAAGCTTTGTCCAACAGTTCTTGGGTGTGAGAGGCTTGCAAGCATTGAACTTCAACATAGAGTTCGGAAGGTCCATGGTGAAGATGAGTAATATCGGTTTGAAGTCTGCAGCAAATGGTGAAATCCGCCGCATTTGTTCTGCCATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

96

Amino Acids

10.58

Weight (kDa)

9.03

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	7 - 53	2.1e-08	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39580 AT5G39580 AT5G64120
fragaria_vesca	FvH4_5g21780 FvH4_5g21800 FvH4_5g24010
malus_domestica	MD00G1088300.v1.1 MD00G1088400.v1.1 MD03G1084400.v1.1 MD08G1230700.v1.1 MD08G1230800.v1.1 MD08G1230900.v1.1 MD08G1231000.v1.1 MD08G1231100.v1.1
pyrus_communis	pycom03g06660 pycom08g20060 pycom08g20070 pycom08g20080 pycom08g20090
rosa_chinensis	RchiOBHm_Chr7g0209261 RchiOBHm_Chr7g0209281 RchiOBHm_Chr7g0209291 RchiOBHm_Chr7g0209311 RchiOBHm_Chr7g0209321
rosa_laevigata	RLG00000003144 RLG00000003145 RLG00000003147 RLG00000003148 RLG00000003150
rosa_multiflora	Rmu_co8212558.1_g000001 Rmu_sc0001701.1_g000016 Rmu_sc0001701.1_g000017 Rmu_sc0037970.1_g000001 Rmu_sc0037970.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249520 Rroxscaffold_3G00249530 Rroxscaffold_3G00249550 Rroxscaffold_3G00249560 Rroxscaffold_3G00249580
rosa_rugosa	Rorug07G0111000 Rorug07G0111100 Rorug07G0111300 Rorug07G0111400
rosa_samantha	Rh7AG245300 Rh7AG245400 Rh7BG240100 Rh7BG240200 Rh7BG240400 Rh7BG240500 Rh7CG260400 Rh7CG260600 Rh7CG260700 Rh7CG260800 Rh7DG251700 Rh7DG251800
rosa_wichuraiana	Rw7G020770 Rw7G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	20, 22, 93
AciI	CCGC	3 cut(s)	93, 265, 268
AgsI	TTSAA	4 cut(s)	73, 187, 193, 241
AluBI	AGCT	2 cut(s)	50, 144
AluI	AGCT	2 cut(s)	50, 144
ApeKI	GCWGC	3 cut(s)	10, 47, 248
AspLEI	GCGC	2 cut(s)	20, 22
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	3 cut(s)	16, 229, 269
AvaII	GGWCC	1 cut(s)	210
BaeI	ACNNNNGTAYC	2 cut(s)	89, 122
BbvI	GCAGC	3 cut(s)	22, 59, 260
BciVI	GTATCC	1 cut(s)	90
BclI	TGATCA	1 cut(s)	109
BfmI	CTRYAG	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	90
BisI	GCNGC	4 cut(s)	11, 48, 249, 268
BlsI	GCNGC	4 cut(s)	12, 49, 250, 269
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmsI	GCATC	2 cut(s)	49, 118
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	213
BsePI	GCGCGC	1 cut(s)	18
BseXI	GCAGC	3 cut(s)	22, 59, 260
BsgI	GTGCAG	1 cut(s)	66
Bsh1236I	CGCG	3 cut(s)	20, 22, 93
Bsp143I	GATC	1 cut(s)	109
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	3 cut(s)	93, 265, 268
BspFNI	CGCG	3 cut(s)	20, 22, 93
BspMAI	CTGCAG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	213
BssHII	GCGCGC	1 cut(s)	18
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	20, 176, 180
BstDEI	CTNAG	1 cut(s)	79
BstDSI	CCRYGG	1 cut(s)	213
BstFNI	CGCG	3 cut(s)	20, 22, 93
BstHHI	GCGC	2 cut(s)	20, 22
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	3 cut(s)	20, 22, 93
BstV1I	GCAGC	3 cut(s)	22, 59, 260
BsuI	GTATCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	20, 176, 180
CfoI	GCGC	2 cut(s)	20, 22
Cfr13I	GGNCC	1 cut(s)	210
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	3 cut(s)	50, 144, 174
CviKI_1	RGCY	3 cut(s)	50, 144, 174
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
EciI	GGCGGA	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	121, 197, 215
FatI	CATG	1 cut(s)	213
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	4 cut(s)	11, 48, 249, 268
Fsp4HI	GCNGC	4 cut(s)	11, 48, 249, 268
GlaI	GCGC	2 cut(s)	19, 21
GluI	GCNGC	4 cut(s)	11, 48, 249, 268
HhaI	GCGC	2 cut(s)	20, 22
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	2 cut(s)	18, 20
HinP1I	GCGC	2 cut(s)	18, 20
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	3 cut(s)	16, 229, 269
Hpy188I	TCNGA	2 cut(s)	109, 206
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4V	TGCA	5 cut(s)	10, 47, 62, 178, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	2 cut(s)	18, 20
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	1 cut(s)	24
Lsp1109I	GCAGC	3 cut(s)	22, 59, 260
LweI	GCATC	2 cut(s)	49, 118
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	2 cut(s)	61, 232
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	2 cut(s)	142, 164
MseI	TTAA	1 cut(s)	285
MvnI	CGCG	3 cut(s)	20, 22, 93
MwoI	GCNNNNNNNGC	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	217
PauI	GCGCGC	1 cut(s)	18
PkrI	GCNGC	4 cut(s)	12, 49, 250, 269
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	250
PteI	GCGCGC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	4 cut(s)	11, 48, 249, 268
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	113
SetI	ASST	3 cut(s)	52, 146, 212
SfaNI	GCATC	2 cut(s)	49, 118
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	3 cut(s)	93, 265, 268
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	27
TasI	AATT	1 cut(s)	116
TauI	GCSGC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	3 cut(s)	10, 47, 248
TspRI	CASTG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.