Rroxscaffold_3G00249520

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001187
Physical Location & Seq
Reverse (-)
43291558 .. 43293702
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249520.1

Sequence Viewer

Length: 717 bp
ATGCCAACGAGTTCATTAAGTTTTCTATCTAGGAAAGCTATCGCTCAGTTACGCACCAGAATGTTCCAAATGTCCAGAATTTTCTTTTTTATGTATCTCTTGCTCATTGCTTTGGCTACCAAGGTGGTGCAAGGCCAACACACCCGTGTCGGATTCTATTCAAGTTCATGCCCTAAAGCAGAGTCCATTGTCAAGCAAACAGTTCAAGCTCATTTCAGTTCCAATCCTTCCATTGCTCCTGGCTTGTTAAGGATGCACTTTCATGATTGCTTTGTCCAAGGTTGCGATGCTTCAGTCCTTCTTGACGGTCCAACCACCGAAAAAACTGCTGGCCCTAACCGCGGATTAAGAGGTTGGGAAGTTATTGACGATGCAAAGAAGAAACTTGAAGCCGCATGCCCTGGAGTTGTTTCCTGTGCTGACATTCTCGCCCTTTGCTGCTCGCGATTCTGTGGTCTTGGTGGACACACAATTGGTACTACAGCTTGCCAGTTTTTCAGTTACAGACTCTATAACTTCAATGCAACCGGAAATGGTGGTGTCAAGGAAGCTCGGAAGACTAATCTTCTATGCGTGGTCTTGATACCAATTCTAATCGAGGCTTTCCGGCGCCTCAAGGAAGAAAGAGATTCAGCTGCTAGACAAACACGGACACTTCAACGAGAACCGGACATGCGAATAAGCGAGAGACACCTTTTCATCTCTTGCAAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

238

Amino Acids

26.44

Weight (kDa)

9.48

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 64 - 146 2e-33 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 609
AccII CGCG 2 cut(s) 342, 445
AciI CCGC 3 cut(s) 340, 342, 393
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 610
AfaI GTAC 1 cut(s) 478
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 5 cut(s) 162, 206, 389, 520, 659
AjnI CCWGG 2 cut(s) 238, 400
AleI CACNNNNGTG 1 cut(s) 144
AluBI AGCT 5 cut(s) 38, 209, 485, 551, 635
AluI AGCT 5 cut(s) 38, 209, 485, 551, 635
Alw26I GTCTC 1 cut(s) 682
AoxI GGCC 2 cut(s) 133, 331
ApeKI GCWGC 2 cut(s) 438, 635
ApoI RAATTY 1 cut(s) 78
AspLEI GCGC 1 cut(s) 612
AspS9I GGNCC 2 cut(s) 308, 332
AvaII GGWCC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 563
BbvI GCAGC 2 cut(s) 425, 622
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 2 cut(s) 240, 402
BcoDI GTCTC 1 cut(s) 682
BfaI CTAG 2 cut(s) 30, 639
BfmI CTRYAG 1 cut(s) 480
BfoI RGCGCY 1 cut(s) 613
BisI GCNGC 3 cut(s) 393, 439, 636
BlsI GCNGC 3 cut(s) 394, 440, 637
Bme1390I CCNGG 2 cut(s) 240, 402
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 308, 332
BmiI GGNNCC 1 cut(s) 611
BmrFI CCNGG 2 cut(s) 240, 402
BmsI GCATC 3 cut(s) 243, 277, 361
BpiI GAAGAC 1 cut(s) 563
BpmI CTGGAG 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 599
BsaHI GRCGYC 1 cut(s) 610
BsaJI CCNNGG 4 cut(s) 120, 277, 340, 400
BsaWI WCCGGW 2 cut(s) 527, 667
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 490
Bse3DI GCAATG 2 cut(s) 105, 231
BseBI CCWGG 2 cut(s) 240, 402
BseDI CCNNGG 4 cut(s) 120, 277, 340, 400
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 2 cut(s) 105, 231
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 490
BseXI GCAGC 2 cut(s) 425, 622
Bsh1236I CGCG 2 cut(s) 342, 445
BshFI GGCC 2 cut(s) 135, 333
BshNI GGYRCC 1 cut(s) 609
BsiSI CCGG 3 cut(s) 528, 607, 668
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 682
BsnI GGCC 2 cut(s) 135, 333
Bsp68I TCGCGA 1 cut(s) 445
BspACI CCGC 3 cut(s) 340, 342, 393
BspANI GGCC 2 cut(s) 135, 333
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 2 cut(s) 342, 445
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 611
BspT107I GGYRCC 1 cut(s) 609
BsrDI GCAATG 2 cut(s) 105, 231
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 4 cut(s) 120, 277, 340, 400
BssNI GRCGYC 1 cut(s) 610
BssT1I CCWWGG 2 cut(s) 120, 277
Bst2UI CCWGG 2 cut(s) 240, 402
Bst4CI ACNGT 2 cut(s) 202, 308
BstACI GRCGYC 1 cut(s) 610
BstC8I GCNNGC 4 cut(s) 331, 397, 443, 487
BstDEI CTNAG 1 cut(s) 45
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 258
BstFNI CGCG 2 cut(s) 342, 445
BstH2I RGCGCY 1 cut(s) 613
BstHHI GCGC 1 cut(s) 612
BstMAI GTCTC 1 cut(s) 682
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNI CCWGG 2 cut(s) 240, 402
BstNSI RCATGY 2 cut(s) 399, 676
BstSCI CCNGG 2 cut(s) 238, 400
BstSFI CTRYAG 1 cut(s) 480
BstUI CGCG 2 cut(s) 342, 445
BstV1I GCAGC 2 cut(s) 425, 622
BstV2I GAAGAC 1 cut(s) 563
BsuRI GGCC 2 cut(s) 135, 333
BtgI CCRYGG 1 cut(s) 340
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 258
BtuMI TCGCGA 1 cut(s) 445
Cac8I GCNNGC 4 cut(s) 331, 397, 443, 487
CciI TCATGA 1 cut(s) 262
CfoI GCGC 1 cut(s) 612
Cfr13I GGNCC 2 cut(s) 308, 332
Cfr42I CCGCGG 1 cut(s) 343
Csp6I GTAC 1 cut(s) 477
CviAII CATG 4 cut(s) 168, 263, 396, 673
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 1 cut(s) 45
DinI GGCGCC 1 cut(s) 611
Eco130I CCWWGG 2 cut(s) 120, 277
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 238, 400
EcoT14I CCWWGG 2 cut(s) 120, 277
EgeI GGCGCC 1 cut(s) 611
EheI GGCGCC 1 cut(s) 611
ErhI CCWWGG 2 cut(s) 120, 277
FaeI CATG 4 cut(s) 171, 266, 399, 676
FaiI YATR 8 cut(s) 92, 169, 264, 397, 513, 571, 674, 715
FatI CATG 4 cut(s) 167, 262, 395, 672
Fnu4HI GCNGC 3 cut(s) 393, 439, 636
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 3 cut(s) 393, 439, 636
FspBI CTAG 2 cut(s) 30, 639
GlaI GCGC 1 cut(s) 611
GluI GCNGC 3 cut(s) 393, 439, 636
GsuI CTGGAG 1 cut(s) 423
HaeII RGCGCY 1 cut(s) 613
HaeIII GGCC 2 cut(s) 135, 333
HapII CCGG 3 cut(s) 528, 607, 668
HhaI GCGC 1 cut(s) 612
Hin1I GRCGYC 1 cut(s) 610
Hin1II CATG 4 cut(s) 171, 266, 399, 676
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HinfI GANTC 5 cut(s) 153, 182, 447, 507, 629
HpaII CCGG 3 cut(s) 528, 607, 668
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 2 cut(s) 152, 555
Hpy188III TCNNGA 5 cut(s) 75, 263, 302, 444, 580
Hpy8I GTNNAC 1 cut(s) 464
HpyAV CCTTC 2 cut(s) 237, 308
HpyCH4III ACNGT 2 cut(s) 202, 308
HpyCH4V TGCA 5 cut(s) 130, 256, 374, 524, 708
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 610
Hsp92II CATG 4 cut(s) 171, 266, 399, 676
HspAI GCGC 1 cut(s) 610
KasI GGCGCC 1 cut(s) 609
KspI CCGCGG 1 cut(s) 343
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 2 cut(s) 425, 622
LweI GCATC 3 cut(s) 243, 277, 361
MaeI CTAG 2 cut(s) 30, 639
MaeIII GTNAC 2 cut(s) 48, 500
MboII GAAGA 4 cut(s) 391, 557, 568, 632
MfeI CAATTG 1 cut(s) 471
MluCI AATT 3 cut(s) 78, 471, 588
Mly113I GGCGCC 1 cut(s) 610
MlyI GAGTC 2 cut(s) 191, 501
MmeI TCCRAC 2 cut(s) 130, 335
MnlI CCTC 3 cut(s) 344, 592, 623
MseI TTAA 3 cut(s) 17, 248, 347
MslI CAYNNNNRTG 3 cut(s) 59, 144, 261
MspA1I CMGCKG 2 cut(s) 342, 635
MspI CCGG 3 cut(s) 528, 607, 668
MspR9I CCNGG 2 cut(s) 240, 402
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 2 cut(s) 240, 402
MvnI CGCG 2 cut(s) 342, 445
MwoI GCNNNNNNNGC 1 cut(s) 339
NarI GGCGCC 1 cut(s) 610
NlaIII CATG 4 cut(s) 171, 266, 399, 676
NlaIV GGNNCC 1 cut(s) 611
NruI TCGCGA 1 cut(s) 445
NspI RCATGY 2 cut(s) 399, 676
OliI CACNNNNGTG 1 cut(s) 144
PaeI GCATGC 1 cut(s) 399
PagI TCATGA 1 cut(s) 262
PfeI GAWTC 3 cut(s) 153, 447, 629
PkrI GCNGC 3 cut(s) 394, 440, 637
PleI GAGTC 2 cut(s) 190, 501
PluTI GGCGCC 1 cut(s) 613
PpsI GAGTC 2 cut(s) 190, 501
Psp6I CCWGG 2 cut(s) 238, 400
PspGI CCWGG 2 cut(s) 238, 400
PspN4I GGNNCC 1 cut(s) 611
PspPI GGNCC 2 cut(s) 308, 332
PvuII CAGCTG 1 cut(s) 635
RruI TCGCGA 1 cut(s) 445
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
RseI CAYNNNNRTG 3 cut(s) 59, 144, 261
SacII CCGCGG 1 cut(s) 343
SaqAI TTAA 3 cut(s) 17, 248, 347
SatI GCNGC 3 cut(s) 393, 439, 636
Sau96I GGNCC 2 cut(s) 308, 332
SchI GAGTC 2 cut(s) 191, 501
ScrFI CCNGG 2 cut(s) 240, 402
SetI ASST 9 cut(s) 40, 126, 211, 283, 355, 487, 553, 637, 696
SfaNI GCATC 3 cut(s) 243, 277, 361
SfcI CTRYAG 1 cut(s) 480
SfoI GGCGCC 1 cut(s) 611
Sfr303I CCGCGG 1 cut(s) 343
SgrBI CCGCGG 1 cut(s) 343
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 3 cut(s) 59, 144, 261
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SphI GCATGC 1 cut(s) 399
Sse9I AATT 3 cut(s) 78, 471, 588
SsiI CCGC 3 cut(s) 340, 342, 393
SspDI GGCGCC 1 cut(s) 609
SspMI CTAG 2 cut(s) 30, 639
StyD4I CCNGG 2 cut(s) 238, 400
StyI CCWWGG 2 cut(s) 120, 277
TaaI ACNGT 2 cut(s) 202, 308
TaqI TCGA 1 cut(s) 597
TasI AATT 3 cut(s) 78, 471, 588
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 3 cut(s) 153, 447, 629
Tru1I TTAA 3 cut(s) 17, 248, 347
Tru9I TTAA 3 cut(s) 17, 248, 347
TseI GCWGC 2 cut(s) 438, 635
TspDTI ATGAA 3 cut(s) 156, 251, 688
TspGWI ACGGA 1 cut(s) 664
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 1 cut(s) 78
XceI RCATGY 2 cut(s) 399, 676
XspI CTAG 2 cut(s) 30, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.