Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001187

Physical Location & Seq

Genomic Coordinates Forward (+)

26684571 .. 26685210

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18734

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCAACGAATTTATTAAGTTTTCTATCTAGGAAAGCTATAGCTCAGTTAAGCACCAGAATGTTCCAAATGTCCAGACTTTTCTTTTTTATGTATCTCTTGCTCATTGCTTTGGCTACCAAGGTGGTGCAAGGCCAAAACGCCCGTGTCGGATTCTATTCAAGTTCATGCCCTAAAGCAGAGTCCATTGTCAAGCAAACAGTTCAAGCTCATTTCATCCTTCTTGACGGTCCAAACACCGAAAAAACTGCTGGCCCTAACCGCGGATTAAGAGGTTGGGAAGTTATTGACGATGCAAAGAAGAAACTTGAAGCCGCATGCCCTGGAGTTGTTTCCTGTGCTTACATTATCGCCCTTGCTGCTCGCGATTCTGTGGTCTTGACGAAGGGAATTGACTGGAAGGTTCCCACCGGGAGATTAGATGGACGATTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

145

Amino Acids

15.99

Weight (kDa)

9.84

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	73 - 143	2.2e-23	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39580 AT5G39580 AT5G64120
fragaria_vesca	FvH4_5g21780 FvH4_5g21800 FvH4_5g24010
malus_domestica	MD00G1088300.v1.1 MD00G1088400.v1.1 MD03G1084400.v1.1 MD08G1230700.v1.1 MD08G1230800.v1.1 MD08G1230900.v1.1 MD08G1231000.v1.1 MD08G1231100.v1.1
pyrus_communis	pycom03g06660 pycom08g20060 pycom08g20070 pycom08g20080 pycom08g20090
rosa_chinensis	RchiOBHm_Chr7g0209261 RchiOBHm_Chr7g0209281 RchiOBHm_Chr7g0209291 RchiOBHm_Chr7g0209311 RchiOBHm_Chr7g0209321
rosa_laevigata	RLG00000003144 RLG00000003145 RLG00000003147 RLG00000003148 RLG00000003150
rosa_multiflora	Rmu_co8212558.1_g000001 Rmu_sc0001701.1_g000016 Rmu_sc0001701.1_g000017 Rmu_sc0037970.1_g000001 Rmu_sc0037970.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249520 Rroxscaffold_3G00249530 Rroxscaffold_3G00249550 Rroxscaffold_3G00249560 Rroxscaffold_3G00249580
rosa_rugosa	Rorug07G0111000 Rorug07G0111100 Rorug07G0111300 Rorug07G0111400
rosa_samantha	Rh7AG245300 Rh7AG245400 Rh7BG240100 Rh7BG240200 Rh7BG240400 Rh7BG240500 Rh7CG260400 Rh7CG260600 Rh7CG260700 Rh7CG260800 Rh7DG251700 Rh7DG251800
rosa_wichuraiana	Rw7G020770 Rw7G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	264, 366
AciI	CCGC	3 cut(s)	262, 264, 315
AcsI	RAATTY	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	3 cut(s)	162, 206, 311
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	3 cut(s)	38, 44, 209
AluI	AGCT	3 cut(s)	38, 44, 209
AoxI	GGCC	2 cut(s)	133, 253
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	230, 254
AsuC2I	CCSGG	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	412
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	2 cut(s)	315, 360
BlsI	GCNGC	2 cut(s)	316, 361
Bme1390I	CCNGG	2 cut(s)	324, 412
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	230, 254
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	2 cut(s)	324, 412
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	120, 262, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	3 cut(s)	120, 262, 322
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	346
Bsh1236I	CGCG	2 cut(s)	264, 366
BshFI	GGCC	2 cut(s)	135, 255
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	263
BsnI	GGCC	2 cut(s)	135, 255
Bsp68I	TCGCGA	1 cut(s)	366
BspACI	CCGC	3 cut(s)	262, 264, 315
BspANI	GGCC	2 cut(s)	135, 255
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	2 cut(s)	264, 366
BspLI	GGNNCC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	3 cut(s)	120, 262, 322
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	202, 230
BstC8I	GCNNGC	3 cut(s)	253, 319, 364
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	2 cut(s)	264, 366
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 359
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	322, 410
BstSFI	CTRYAG	1 cut(s)	39
BstUI	CGCG	2 cut(s)	264, 366
BstV1I	GCAGC	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	135, 255
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	216
BtuMI	TCGCGA	1 cut(s)	366
Cac8I	GCNNGC	3 cut(s)	253, 319, 364
Cfr13I	GGNCC	2 cut(s)	230, 254
Cfr42I	CCGCGG	1 cut(s)	265
CviAII	CATG	2 cut(s)	168, 318
CviJI	RGCY	7 cut(s)	38, 44, 116, 135, 209, 255, 314
CviKI_1	RGCY	7 cut(s)	38, 44, 116, 135, 209, 255, 314
DdeI	CTNAG	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	171, 321
FaiI	YATR	4 cut(s)	41, 92, 169, 319
FatI	CATG	2 cut(s)	167, 317
Fnu4HI	GCNGC	2 cut(s)	315, 360
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	315, 360
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	2 cut(s)	315, 360
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	135, 255
HapII	CCGG	1 cut(s)	411
Hin1II	CATG	2 cut(s)	171, 321
HinfI	GANTC	3 cut(s)	153, 182, 368
HpaII	CCGG	1 cut(s)	411
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	4 cut(s)	75, 224, 365, 379
HpyAV	CCTTC	3 cut(s)	230, 379, 394
HpyCH4III	ACNGT	2 cut(s)	202, 230
HpyCH4V	TGCA	2 cut(s)	130, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 359
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	171, 321
KspI	CCGCGG	1 cut(s)	265
LpnPI	CCDG	8 cut(s)	70, 88, 237, 309, 336, 349, 382, 424
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	30
MboII	GAAGA	1 cut(s)	313
MluCI	AATT	2 cut(s)	10, 390
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	1 cut(s)	266
MseI	TTAA	3 cut(s)	17, 50, 269
MslI	CAYNNNNRTG	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	2 cut(s)	324, 412
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	2 cut(s)	264, 366
MwoI	GCNNNNNNNGC	2 cut(s)	261, 359
NciI	CCSGG	1 cut(s)	412
NlaIII	CATG	2 cut(s)	171, 321
NlaIV	GGNNCC	1 cut(s)	405
NruI	TCGCGA	1 cut(s)	366
NspI	RCATGY	1 cut(s)	321
PaeI	GCATGC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	153, 368
PkrI	GCNGC	2 cut(s)	316, 361
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	230, 254
RruI	TCGCGA	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	59
SacII	CCGCGG	1 cut(s)	265
SaqAI	TTAA	3 cut(s)	17, 50, 269
SatI	GCNGC	2 cut(s)	315, 360
Sau96I	GGNCC	2 cut(s)	230, 254
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	324, 412
SetI	ASST	6 cut(s)	40, 46, 126, 211, 277, 405
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	39
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	59
SphI	GCATGC	1 cut(s)	321
Sse9I	AATT	2 cut(s)	10, 390
SsiI	CCGC	3 cut(s)	262, 264, 315
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	322, 410
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	202, 230
TasI	AATT	2 cut(s)	10, 390
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	153, 368
Tru1I	TTAA	3 cut(s)	17, 50, 269
Tru9I	TTAA	3 cut(s)	17, 50, 269
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	3 cut(s)	156, 205, 422
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	321
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.