RchiOBHm_Chr7g0209311

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001187
Physical Location & Seq
Reverse (-)
26681357 .. 26682577
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18733

Sequence Viewer

Length: 993 bp
ATGTACCTTAAGTCATCCATTTTGTTAATGCTTCTCTTGCTTTCCTTGGCTACAATCTTGCTCTCTGCGCAAGGTAAAGAAGCCCCCCGTGTCGGATTCTATTCGCTTTCATGTCCTAGAGCAGAGTCCATTATCAAACAAACAGTTCAATCTCACTTCAAATCAGATCCTACCATTGCTCCTGGCATATTAAGGATGCACTTCCATGACTGCTTTGTTCAAGGCTGCGATGGTTCTGTTCTTCTCGACGGCCCAAGCACTGAAAAAACTGCTGGCCCTAACCGCGGATTAAGAGGTTGGGAAGTTATCGACAATGCAAAGACAAAGCTTGAAGCCGCATGCCCTGGGGTTGTTTCCTGTGCAGACATTCTCGCCCTAGCTGCTCGCGATTCTGTTGTTTTGACCAAGGGAATCGATTGGAAGGTGCCTACTGGAAGATTAGACGGACGTATTTCATTGGCATCGGAGACTTCAGCTTTGCCTGGCTTTAGAGACTCCATGAAAGTACAAAAGGACAAGTTCAAAAATTTGGGTCTCAACACTCAAGATCTTGTCACTCTTGTTGGTGGACACACCATTGGCACTACCGCTTGCCAGTTATTCAGCTACAGACTCTATAACTTCAACACAACTGGAAATGGTGATGCTACAGACCCTACCATCAGTCCTTCATTCCTTTCTCAATTAAAATCACTTTGCCCAGAAAATGGCGATGGAGCCAAGCGTGTTGATTTAGACACAGGCAGAGAAAACCGATTTGATGCGACATTCTTTACAAACTTGAAGAATGGGCGTGGTGTACTCGAGTCCGATCAAATGTTATGGACTGATGCCTCCACAAGAAGCTTTGTCCAACGTTTCTTGGGAGTCAGAGGCTTGCGAGCATTGAATTTTAATGCAGAGTTTGGAAGGTCTATGGTGAAGATGAGTAAAATTGGTTTGAAACCTGCGGCAAAGGGTGAAATTCGCCGCATTTGTCCTGCAGTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

330

Amino Acids

35.84

Weight (kDa)

9.27

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 287 4.7e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 955
AccB1I GGYRCC 1 cut(s) 424
AccB7I CCANNNNNTGG 1 cut(s) 707
AccII CGCG 2 cut(s) 285, 387
AciI CCGC 6 cut(s) 283, 285, 336, 588, 950, 970
AclI AACGTT 1 cut(s) 856
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 3 cut(s) 526, 889, 963
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 3 cut(s) 5, 507, 801
AfiI CCNNNNNNNGG 3 cut(s) 92, 284, 707
AflII CTTAAG 1 cut(s) 8
AgsI TTSAA 9 cut(s) 149, 160, 221, 332, 523, 625, 784, 889, 943
AjnI CCWGG 3 cut(s) 181, 343, 481
AluBI AGCT 5 cut(s) 328, 380, 476, 606, 846
AluI AGCT 5 cut(s) 328, 380, 476, 606, 846
Alw26I GTCTC 3 cut(s) 461, 486, 539
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 803
AoxI GGCC 2 cut(s) 250, 274
ApeKI GCWGC 2 cut(s) 225, 380
ApoI RAATTY 3 cut(s) 526, 889, 963
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 251, 275
AsuHPI GGTGA 3 cut(s) 653, 931, 971
AvaI CYCGRG 1 cut(s) 803
BanI GGYRCC 1 cut(s) 424
BbvI GCAGC 2 cut(s) 212, 367
BccI CCATC 3 cut(s) 224, 668, 707
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 3 cut(s) 183, 345, 483
BcoDI GTCTC 3 cut(s) 461, 486, 539
BfaI CTAG 2 cut(s) 117, 377
BfmI CTRYAG 3 cut(s) 607, 648, 981
BfrI CTTAAG 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 955
BglII AGATCT 1 cut(s) 547
BisI GCNGC 5 cut(s) 226, 336, 381, 951, 970
BlsI GCNGC 5 cut(s) 227, 337, 382, 952, 971
Bme1390I CCNGG 3 cut(s) 183, 345, 483
BmeT110I CYCGRG 1 cut(s) 803
BmgT120I GGNCC 2 cut(s) 251, 275
BmiI GGNNCC 2 cut(s) 426, 718
BmrFI CCNGG 3 cut(s) 183, 345, 483
BmsI GCATC 5 cut(s) 186, 470, 634, 751, 820
BpuEI CTTGAG 1 cut(s) 528
Bsa29I ATCGAT 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 5 cut(s) 45, 283, 343, 344, 405
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 284, 707
Bse1I ACTGG 3 cut(s) 436, 595, 637
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 3 cut(s) 183, 345, 483
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 5 cut(s) 45, 283, 343, 344, 405
BseGI GGATG 2 cut(s) 14, 201
BseLI CCNNNNNNNGG 3 cut(s) 92, 284, 707
BseMI GCAATG 1 cut(s) 174
BseNI ACTGG 3 cut(s) 436, 595, 637
BseXI GCAGC 2 cut(s) 212, 367
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 2 cut(s) 285, 387
BshFI GGCC 2 cut(s) 252, 276
BshNI GGYRCC 1 cut(s) 424
BshVI ATCGAT 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 803
BslI CCNNNNNNNGG 3 cut(s) 92, 284, 707
BsmAI GTCTC 3 cut(s) 461, 486, 539
BsnI GGCC 2 cut(s) 252, 276
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 803
Bsp143I GATC 3 cut(s) 166, 547, 811
Bsp68I TCGCGA 1 cut(s) 387
BspACI CCGC 6 cut(s) 283, 285, 336, 588, 950, 970
BspANI GGCC 2 cut(s) 252, 276
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 2 cut(s) 285, 387
BspLI GGNNCC 2 cut(s) 426, 718
BspMAI CTGCAG 1 cut(s) 985
BspMI ACCTGC 1 cut(s) 955
BspPI GGATC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 424
BspTI CTTAAG 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 3 cut(s) 436, 595, 637
BssECI CCNNGG 5 cut(s) 45, 283, 343, 344, 405
BssMI GATC 3 cut(s) 166, 547, 811
BssT1I CCWWGG 2 cut(s) 45, 405
Bst2UI CCWGG 3 cut(s) 183, 345, 483
Bst4CI ACNGT 1 cut(s) 145
BstAFI CTTAAG 1 cut(s) 8
BstC8I GCNNGC 6 cut(s) 274, 340, 385, 592, 878, 882
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 2 cut(s) 14, 201
BstFNI CGCG 2 cut(s) 285, 387
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 3 cut(s) 169, 550, 814
BstMAI GTCTC 3 cut(s) 461, 486, 539
BstMBI GATC 3 cut(s) 166, 547, 811
BstMWI GCNNNNNNNGC 4 cut(s) 37, 67, 282, 380
BstNI CCWGG 3 cut(s) 183, 345, 483
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 3 cut(s) 181, 343, 481
BstSFI CTRYAG 3 cut(s) 607, 648, 981
BstUI CGCG 2 cut(s) 285, 387
BstV1I GCAGC 2 cut(s) 212, 367
BstX2I RGATCY 2 cut(s) 166, 547
BstYI RGATCY 2 cut(s) 166, 547
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 2 cut(s) 252, 276
BsuTUI ATCGAT 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 283
BtgZI GCGATG 2 cut(s) 243, 726
BtsCI GGATG 2 cut(s) 14, 201
BtsIMutI CAGTG 1 cut(s) 258
BtuMI TCGCGA 1 cut(s) 387
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 6 cut(s) 274, 340, 385, 592, 878, 882
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 251, 275
Cfr42I CCGCGG 1 cut(s) 286
ClaI ATCGAT 1 cut(s) 414
Csp6I GTAC 3 cut(s) 4, 506, 800
CviAII CATG 4 cut(s) 111, 206, 339, 499
CviQI GTAC 3 cut(s) 4, 506, 800
DpnI GATC 3 cut(s) 168, 549, 813
DpnII GATC 3 cut(s) 166, 547, 811
Eco130I CCWWGG 2 cut(s) 45, 405
Eco31I GGTCTC 1 cut(s) 539
Eco57I CTGAAG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 803
EcoRII CCWGG 3 cut(s) 181, 343, 481
EcoT14I CCWWGG 2 cut(s) 45, 405
ErhI CCWWGG 2 cut(s) 45, 405
FaeI CATG 4 cut(s) 114, 209, 342, 502
FaiI YATR 8 cut(s) 112, 188, 207, 340, 500, 618, 823, 917
FatI CATG 4 cut(s) 110, 205, 338, 498
Fnu4HI GCNGC 5 cut(s) 226, 336, 381, 951, 970
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 5 cut(s) 226, 336, 381, 951, 970
FspBI CTAG 2 cut(s) 117, 377
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 1 cut(s) 69
GluI GCNGC 5 cut(s) 226, 336, 381, 951, 970
HaeIII GGCC 2 cut(s) 252, 276
HhaI GCGC 1 cut(s) 70
Hin1II CATG 4 cut(s) 114, 209, 342, 502
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HindIII AAGCTT 2 cut(s) 326, 844
HinfI GANTC 8 cut(s) 96, 125, 389, 411, 494, 612, 806, 867
HpaI GTTAAC 1 cut(s) 988
HphI GGTGA 3 cut(s) 653, 931, 971
Hpy166II GTNNAC 3 cut(s) 569, 800, 988
Hpy188I TCNGA 5 cut(s) 95, 166, 466, 811, 872
Hpy188III TCNNGA 3 cut(s) 245, 386, 545
Hpy8I GTNNAC 3 cut(s) 569, 800, 988
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 415, 678, 903
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 2 cut(s) 448, 856
HpyCH4V TGCA 5 cut(s) 199, 317, 362, 899, 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 67, 282, 380
HpySE526I ACGT 2 cut(s) 448, 856
Hsp92II CATG 4 cut(s) 114, 209, 342, 502
HspAI GCGC 1 cut(s) 68
KspAI GTTAAC 1 cut(s) 988
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 3 cut(s) 166, 547, 811
LmnI GCTCC 2 cut(s) 184, 716
Lsp1109I GCAGC 2 cut(s) 212, 367
LweI GCATC 5 cut(s) 186, 470, 634, 751, 820
MaeI CTAG 2 cut(s) 117, 377
MaeII ACGT 2 cut(s) 448, 856
MaeIII GTNAC 1 cut(s) 553
MalI GATC 3 cut(s) 168, 549, 813
MboI GATC 3 cut(s) 166, 547, 811
MboII GAAGA 4 cut(s) 233, 447, 796, 934
MflI RGATCY 2 cut(s) 166, 547
MluCI AATT 5 cut(s) 526, 683, 889, 933, 963
MlyI GAGTC 5 cut(s) 134, 488, 606, 815, 876
MmeI TCCRAC 2 cut(s) 73, 877
MnlI CCTC 3 cut(s) 287, 844, 866
MseI TTAA 7 cut(s) 9, 26, 191, 290, 686, 894, 987
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 8
MspR9I CCNGG 3 cut(s) 183, 345, 483
MvaI CCWGG 3 cut(s) 183, 345, 483
MvnI CGCG 2 cut(s) 285, 387
MwoI GCNNNNNNNGC 4 cut(s) 37, 67, 282, 380
NdeII GATC 3 cut(s) 166, 547, 811
NlaIII CATG 4 cut(s) 114, 209, 342, 502
NlaIV GGNNCC 2 cut(s) 426, 718
NmuCI GTSAC 1 cut(s) 553
NruI TCGCGA 1 cut(s) 387
NsbI TGCGCA 1 cut(s) 69
NspI RCATGY 1 cut(s) 342
PaeI GCATGC 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 803
PasI CCCWGGG 1 cut(s) 344
PfeI GAWTC 3 cut(s) 96, 389, 411
PflMI CCANNNNNTGG 1 cut(s) 707
PkrI GCNGC 5 cut(s) 227, 337, 382, 952, 971
PleI GAGTC 5 cut(s) 133, 488, 606, 814, 875
PpsI GAGTC 5 cut(s) 133, 488, 606, 814, 875
Psp1406I AACGTT 1 cut(s) 856
Psp6I CCWGG 3 cut(s) 181, 343, 481
PspGI CCWGG 3 cut(s) 181, 343, 481
PspN4I GGNNCC 2 cut(s) 426, 718
PspPI GGNCC 2 cut(s) 251, 275
PspXI VCTCGAGB 1 cut(s) 803
PstI CTGCAG 1 cut(s) 985
PsuI RGATCY 2 cut(s) 166, 547
RruI TCGCGA 1 cut(s) 387
RsaI GTAC 3 cut(s) 5, 507, 801
RsaNI GTAC 3 cut(s) 4, 506, 800
RseI CAYNNNNRTG 1 cut(s) 204
SacII CCGCGG 1 cut(s) 286
SaqAI TTAA 7 cut(s) 9, 26, 191, 290, 686, 894, 987
SatI GCNGC 5 cut(s) 226, 336, 381, 951, 970
Sau3AI GATC 3 cut(s) 166, 547, 811
Sau96I GGNCC 2 cut(s) 251, 275
SchI GAGTC 5 cut(s) 134, 488, 606, 815, 876
ScrFI CCNGG 3 cut(s) 183, 345, 483
SfaNI GCATC 5 cut(s) 186, 470, 634, 751, 820
SfcI CTRYAG 3 cut(s) 607, 648, 981
Sfr274I CTCGAG 1 cut(s) 803
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SlaI CTCGAG 1 cut(s) 803
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 3 cut(s) 8, 543, 803
SmoI CTYRAG 3 cut(s) 8, 543, 803
SphI GCATGC 1 cut(s) 342
Sse9I AATT 5 cut(s) 526, 683, 889, 933, 963
SsiI CCGC 6 cut(s) 283, 285, 336, 588, 950, 970
SspMI CTAG 2 cut(s) 117, 377
StyD4I CCNGG 3 cut(s) 181, 343, 481
StyI CCWWGG 2 cut(s) 45, 405
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 2 cut(s) 451, 859
TaqI TCGA 4 cut(s) 246, 309, 414, 804
TasI AATT 5 cut(s) 526, 683, 889, 933, 963
TatI WGTACW 2 cut(s) 505, 799
TauI GCSGC 3 cut(s) 338, 953, 972
TfiI GAWTC 3 cut(s) 96, 389, 411
Tru1I TTAA 7 cut(s) 9, 26, 191, 290, 686, 894, 987
Tru9I TTAA 7 cut(s) 9, 26, 191, 290, 686, 894, 987
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 2 cut(s) 225, 380
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 4 cut(s) 99, 444, 515, 660
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 707
Vha464I CTTAAG 1 cut(s) 8
XapI RAATTY 3 cut(s) 526, 889, 963
XceI RCATGY 1 cut(s) 342
XhoI CTCGAG 1 cut(s) 803
XspI CTAG 2 cut(s) 117, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.