Rmu_co8212558.1_g000001

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8212558.1
OG0001187
Physical Location & Seq
Reverse (-)
363 .. 728
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8212558.1_g000001.1.cds

Sequence Viewer

Length: 366 bp
ttcactacaactggaaacggcgcagaccctaccatcaatccttcatttgttcctcaactacgagcactttgcccccaagctggtgatgcagccaagcgtgtcgatttggacaccggcagcgcagctcgatttgatgcaacattctttacaaacttaaagaacggccgcgggatactcgagtctgatcaaaagttatggactgatgcctccacaaaaagccttgttcaacggttcttgggtgtgagaggtttgcaggcattgaacttcaacgtagagttcggaagatccatggtgaagatgagtactattggtgtaaagtctgcaacaaatggtgaaattcgccgcatttgttctgcaattaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

121

Amino Acids

13.04

Weight (kDa)

9.77

Isoelectric Point (pI)

28.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AciI CCGC 3 cut(s) 166, 168, 343
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 336
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 3 cut(s) 227, 262, 268
AluBI AGCT 2 cut(s) 80, 125
AluI AGCT 2 cut(s) 80, 125
Alw21I GWGCWC 1 cut(s) 67
AlwI GGATC 1 cut(s) 279
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 3 cut(s) 89, 117, 122
ApoI RAATTY 1 cut(s) 336
AspLEI GCGC 2 cut(s) 23, 122
AsuHPI GGTGA 3 cut(s) 95, 304, 344
AvaI CYCGRG 1 cut(s) 176
BaeI ACNNNNGTAYC 2 cut(s) 164, 197
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 101, 129, 134
BccI CCATC 1 cut(s) 41
BceAI ACGGC 2 cut(s) 34, 178
BcgI CGANNNNNNTGC 2 cut(s) 51, 85
BciVI GTATCC 1 cut(s) 165
BclI TGATCA 1 cut(s) 184
BfuI GTATCC 1 cut(s) 165
BisI GCNGC 5 cut(s) 90, 118, 123, 166, 343
BlsI GCNGC 5 cut(s) 91, 119, 124, 167, 344
BmcAI AGTACT 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 176
BmsI GCATC 3 cut(s) 76, 124, 193
BsaJI CCNNGG 2 cut(s) 166, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 166, 288
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 16
BseX3I CGGCCG 1 cut(s) 163
BseXI GCAGC 3 cut(s) 101, 129, 134
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 80
BsnI GGCC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 184, 284
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 3 cut(s) 166, 168, 343
BspANI GGCC 1 cut(s) 165
BspFNI CGCG 1 cut(s) 168
BspPI GGATC 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 166, 288
BssMI GATC 2 cut(s) 184, 284
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 255
BstDSI CCRYGG 2 cut(s) 166, 288
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 2 cut(s) 23, 122
BstKTI GATC 2 cut(s) 187, 287
BstMBI GATC 2 cut(s) 184, 284
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 101, 129, 134
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BstZI CGGCCG 1 cut(s) 163
BsuI GTATCC 1 cut(s) 165
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 2 cut(s) 166, 288
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 2 cut(s) 23, 122
Cfr10I RCCGGY 1 cut(s) 113
Cfr42I CCGCGG 1 cut(s) 169
Csp6I GTAC 1 cut(s) 303
CviAII CATG 1 cut(s) 289
CviJI RGCY 5 cut(s) 80, 92, 125, 165, 219
CviKI_1 RGCY 5 cut(s) 80, 92, 125, 165, 219
CviQI GTAC 1 cut(s) 303
DpnI GATC 2 cut(s) 186, 286
DpnII GATC 2 cut(s) 184, 284
EaeI YGGCCR 1 cut(s) 163
EagI CGGCCG 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 288
Eco52I CGGCCG 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 292
FaiI YATR 2 cut(s) 196, 290
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 161
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 5 cut(s) 90, 118, 123, 166, 343
Fsp4HI GCNGC 5 cut(s) 90, 118, 123, 166, 343
GlaI GCGC 2 cut(s) 22, 121
GluI GCNGC 5 cut(s) 90, 118, 123, 166, 343
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 114
HhaI GCGC 2 cut(s) 23, 122
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 2 cut(s) 21, 120
HinP1I GCGC 2 cut(s) 21, 120
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 114
HphI GGTGA 3 cut(s) 95, 304, 344
Hpy188I TCNGA 2 cut(s) 184, 281
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 5 cut(s) 89, 137, 253, 323, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 2 cut(s) 21, 120
Ksp22I TGATCA 1 cut(s) 184
KspI CCGCGG 1 cut(s) 169
Kzo9I GATC 2 cut(s) 184, 284
LpnPI CCDG 3 cut(s) 66, 127, 239
Lsp1109I GCAGC 3 cut(s) 101, 129, 134
LweI GCATC 3 cut(s) 76, 124, 193
MaeII ACGT 1 cut(s) 270
MalI GATC 2 cut(s) 186, 286
MboI GATC 2 cut(s) 184, 284
MboII GAAGA 2 cut(s) 294, 307
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 2 cut(s) 336, 357
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 3 cut(s) 63, 217, 239
MseI TTAA 2 cut(s) 155, 360
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 86
NcoI CCATGG 1 cut(s) 288
NdeII GATC 2 cut(s) 184, 284
NlaIII CATG 1 cut(s) 292
PaeR7I CTCGAG 1 cut(s) 176
PkrI GCNGC 5 cut(s) 91, 119, 124, 167, 344
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 176
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SacII CCGCGG 1 cut(s) 169
SaqAI TTAA 2 cut(s) 155, 360
SatI GCNGC 5 cut(s) 90, 118, 123, 166, 343
Sau3AI GATC 2 cut(s) 184, 284
ScaI AGTACT 1 cut(s) 304
SchI GAGTC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 67
SetI ASST 4 cut(s) 82, 127, 250, 273
SfaNI GCATC 3 cut(s) 76, 124, 193
Sfr274I CTCGAG 1 cut(s) 176
Sfr303I CCGCGG 1 cut(s) 169
SgrBI CCGCGG 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 336, 357
SsiI CCGC 3 cut(s) 166, 168, 343
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 102, 127, 177
TasI AATT 2 cut(s) 336, 357
TatI WGTACW 1 cut(s) 302
TauI GCSGC 2 cut(s) 168, 345
Tru1I TTAA 2 cut(s) 155, 360
Tru9I TTAA 2 cut(s) 155, 360
TseI GCWGC 3 cut(s) 89, 117, 122
TspDTI ATGAA 1 cut(s) 33
XapI RAATTY 1 cut(s) 336
XhoI CTCGAG 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.