FvH4_5g21800

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001187
Physical Location & Seq
Reverse (-)
13183236 .. 13184861
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21800.t1

Sequence Viewer

Length: 996 bp
ATGTACCGTAAGTCATCCATTTTGTTAATGCTTCTCTTGCTTTCCTTGGCTACAACCTTGCCCTCTGCCCAAGCAAGCAAACAAGTCCCCCGCGTCGGATACTATTCGCGTTCATGTCCCAGCGCAGAGTCCATTGTCAAACAAACAGTTCAATCTCACTTCAAATCCAATCCTACCATTGCTCCTGGCTTGTTAAGAATGCACTTCCATGACTGCTTTGTTCAAGGCTGCGATGGTTCTGTTCTTCTTGACGGTCCAAGCACGGAGAAAACTGCCGGCCCTAACCGCGGATTAAGAGGTTGGGATGTTATCGACGATGCAAAGACAAAGCTTGAAGCCGCATGCCCTGGGGTTGTTTCCTGTGCTGACATTCTCGCCCTAGCTGCTCGTGATTCTGTCGTTTTGACCAAGGGAATCGATTGGAAGGTGCCTACCGGAAGATTAGACGGACGTGTTTCATTGGCATCCGAGACTTCAGCTCTGCCTGGCGCTAGGGACTCCATGAAAGTACAGAAGGACAAGTTCAAGAATTTAGGTCTCAACACTCAAGATCTTGTCACTCTTGTTGGTGGACACACCATTGGAACTACCGCTTGTCAGTTATTCAGCTATAGACTCTATAACTTCAACACAACTGGAAATGGTGATGCTACAGACCCTACTATCAGTCCTTCATTCCTTTCTCAACTAAAATCACTTTGCCCACAAAATGATGATGGAACCAAGCGTGTTGATCTAGACACAGGCAGCGTAAACCGATTTGATGCAACATTCTTTAAGAACTTGAAGAATGGGCGTGGTGTACTCGAGTCCGATCAAATGTTATGGACTGATGCCTCCACCAGAAGCTTTGTCCAACGTTTCTTGGGAGTCAGAGGCTTGCAAGCACTGAATTTTAATGCAGAGTTCGGAAGGTCTATGGTGAAGATGAGTAAAATTGGTTTGAAACCTGCGGCAAAGGGTGAAATTCGCCGCATTTGTTCTGTAACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

332

Amino Acids

35.86

Weight (kDa)

9.4

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 288 8.1e-86 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 958
AccB1I GGYRCC 1 cut(s) 427
AccII CGCG 3 cut(s) 93, 109, 288
AciI CCGC 7 cut(s) 91, 286, 288, 339, 591, 953, 973
AclI AACGTT 1 cut(s) 859
AcsI RAATTY 3 cut(s) 529, 892, 966
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 3 cut(s) 5, 510, 804
AfiI CCNNNNNNNGG 2 cut(s) 95, 287
AflIII ACRYGT 1 cut(s) 451
AgsI TTSAA 8 cut(s) 152, 163, 224, 335, 526, 628, 787, 946
AjiI CACGTC 1 cut(s) 452
AjnI CCWGG 3 cut(s) 184, 346, 484
AluBI AGCT 5 cut(s) 331, 383, 479, 609, 849
AluI AGCT 5 cut(s) 331, 383, 479, 609, 849
Alw26I GTCTC 2 cut(s) 464, 542
Ama87I CYCGRG 1 cut(s) 806
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 3 cut(s) 228, 383, 747
ApoI RAATTY 3 cut(s) 529, 892, 966
AspLEI GCGC 2 cut(s) 125, 491
AspS9I GGNCC 2 cut(s) 254, 278
AsuHPI GGTGA 3 cut(s) 656, 934, 974
AvaI CYCGRG 1 cut(s) 806
AvaII GGWCC 1 cut(s) 254
BanI GGYRCC 1 cut(s) 427
BauI CACGAG 1 cut(s) 387
BbvI GCAGC 3 cut(s) 215, 370, 759
BccI CCATC 2 cut(s) 227, 710
BciT130I CCWGG 3 cut(s) 186, 348, 486
BciVI GTATCC 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 464, 542
BfaI CTAG 3 cut(s) 380, 492, 737
BfmI CTRYAG 2 cut(s) 610, 651
BfoI RGCGCY 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 958
BfuI GTATCC 1 cut(s) 92
BglII AGATCT 1 cut(s) 550
BisI GCNGC 6 cut(s) 229, 339, 384, 748, 954, 973
BlsI GCNGC 6 cut(s) 230, 340, 385, 749, 955, 974
Bme1390I CCNGG 3 cut(s) 186, 348, 486
Bme18I GGWCC 1 cut(s) 254
BmeT110I CYCGRG 1 cut(s) 806
BmgBI CACGTC 1 cut(s) 452
BmgT120I GGNCC 2 cut(s) 254, 278
BmiI GGNNCC 2 cut(s) 429, 721
BmrFI CCNGG 3 cut(s) 186, 348, 486
BmsI GCATC 5 cut(s) 307, 473, 637, 754, 823
BpuEI CTTGAG 1 cut(s) 531
Bsa29I ATCGAT 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 5 cut(s) 45, 286, 346, 347, 408
BsaWI WCCGGW 1 cut(s) 434
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 287
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 640
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 3 cut(s) 186, 348, 486
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 5 cut(s) 45, 286, 346, 347, 408
BseGI GGATG 3 cut(s) 14, 310, 464
BseLI CCNNNNNNNGG 2 cut(s) 95, 287
BseMI GCAATG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 640
BseXI GCAGC 3 cut(s) 215, 370, 759
BseYI CCCAGC 1 cut(s) 119
Bsh1236I CGCG 3 cut(s) 93, 109, 288
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 427
BshVI ATCGAT 1 cut(s) 417
BsiHKCI CYCGRG 1 cut(s) 806
BsiSI CCGG 2 cut(s) 276, 435
BslFI GGGAC 3 cut(s) 71, 102, 509
BslI CCNNNNNNNGG 2 cut(s) 95, 287
BsmAI GTCTC 2 cut(s) 464, 542
BsmFI GGGAC 3 cut(s) 71, 102, 509
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 806
Bsp143I GATC 3 cut(s) 550, 733, 814
BspACI CCGC 7 cut(s) 91, 286, 288, 339, 591, 953, 973
BspANI GGCC 1 cut(s) 279
BspDI ATCGAT 1 cut(s) 417
BspFNI CGCG 3 cut(s) 93, 109, 288
BspLI GGNNCC 2 cut(s) 429, 721
BspMI ACCTGC 1 cut(s) 958
BspT107I GGYRCC 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 1 cut(s) 640
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 5 cut(s) 45, 286, 346, 347, 408
BssMI GATC 3 cut(s) 550, 733, 814
BssSI CACGAG 1 cut(s) 387
BssT1I CCWWGG 2 cut(s) 45, 408
Bst2BI CACGAG 1 cut(s) 387
Bst2UI CCWGG 3 cut(s) 186, 348, 486
Bst4CI ACNGT 3 cut(s) 8, 148, 254
BstC8I GCNNGC 5 cut(s) 76, 277, 343, 881, 885
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 3 cut(s) 14, 310, 464
BstFNI CGCG 3 cut(s) 93, 109, 288
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 2 cut(s) 125, 491
BstKTI GATC 3 cut(s) 553, 736, 817
BstMAI GTCTC 2 cut(s) 464, 542
BstMBI GATC 3 cut(s) 550, 733, 814
BstMWI GCNNNNNNNGC 3 cut(s) 37, 285, 383
BstNI CCWGG 3 cut(s) 186, 348, 486
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 184, 346, 484
BstSFI CTRYAG 2 cut(s) 610, 651
BstUI CGCG 3 cut(s) 93, 109, 288
BstV1I GCAGC 3 cut(s) 215, 370, 759
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
Bsu15I ATCGAT 1 cut(s) 417
BsuI GTATCC 1 cut(s) 92
BsuRI GGCC 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 246
BtrI CACGTC 1 cut(s) 452
BtsCI GGATG 3 cut(s) 14, 310, 464
BtsIMutI CAGTG 1 cut(s) 887
BveI ACCTGC 1 cut(s) 958
Cac8I GCNNGC 5 cut(s) 76, 277, 343, 881, 885
CfoI GCGC 2 cut(s) 125, 491
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 254, 278
Cfr42I CCGCGG 1 cut(s) 289
ClaI ATCGAT 1 cut(s) 417
CseI GACGC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 4, 509, 803
CviAII CATG 4 cut(s) 114, 209, 342, 502
CviQI GTAC 3 cut(s) 4, 509, 803
DpnI GATC 3 cut(s) 552, 735, 816
DpnII GATC 3 cut(s) 550, 733, 814
Eco130I CCWWGG 2 cut(s) 45, 408
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 806
EcoRII CCWGG 3 cut(s) 184, 346, 484
EcoT14I CCWWGG 2 cut(s) 45, 408
ErhI CCWWGG 2 cut(s) 45, 408
FaeI CATG 4 cut(s) 117, 212, 345, 505
FaiI YATR 8 cut(s) 115, 210, 343, 503, 612, 621, 826, 920
FaqI GGGAC 3 cut(s) 71, 102, 509
FatI CATG 4 cut(s) 113, 208, 341, 501
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 6 cut(s) 229, 339, 384, 748, 954, 973
FokI GGATG 2 cut(s) 317, 451
Fsp4HI GCNGC 6 cut(s) 229, 339, 384, 748, 954, 973
FspBI CTAG 3 cut(s) 380, 492, 737
GlaI GCGC 2 cut(s) 124, 490
GluI GCNGC 6 cut(s) 229, 339, 384, 748, 954, 973
GsaI CCCAGC 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 492
HaeIII GGCC 1 cut(s) 279
HapII CCGG 2 cut(s) 276, 435
HgaI GACGC 1 cut(s) 82
HhaI GCGC 2 cut(s) 125, 491
Hin1II CATG 4 cut(s) 117, 212, 345, 505
Hin6I GCGC 2 cut(s) 123, 489
HinP1I GCGC 2 cut(s) 123, 489
HindIII AAGCTT 2 cut(s) 329, 847
HinfI GANTC 7 cut(s) 128, 392, 414, 497, 615, 809, 870
HpaII CCGG 2 cut(s) 276, 435
HphI GGTGA 3 cut(s) 656, 934, 974
Hpy166II GTNNAC 3 cut(s) 572, 754, 803
Hpy188I TCNGA 5 cut(s) 98, 469, 814, 875, 911
Hpy188III TCNNGA 5 cut(s) 248, 389, 526, 548, 737
Hpy8I GTNNAC 3 cut(s) 572, 754, 803
Hpy99I CGWCG 2 cut(s) 98, 317
HpyAV CCTTC 4 cut(s) 418, 508, 681, 906
HpyCH4III ACNGT 3 cut(s) 8, 148, 254
HpyCH4IV ACGT 2 cut(s) 451, 859
HpyCH4V TGCA 5 cut(s) 202, 320, 767, 883, 902
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 285, 383
HpySE526I ACGT 2 cut(s) 451, 859
Hsp92II CATG 4 cut(s) 117, 212, 345, 505
HspAI GCGC 2 cut(s) 123, 489
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
KspI CCGCGG 1 cut(s) 289
Kzo9I GATC 3 cut(s) 550, 733, 814
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 3 cut(s) 215, 370, 759
LweI GCATC 5 cut(s) 307, 473, 637, 754, 823
MaeI CTAG 3 cut(s) 380, 492, 737
MaeII ACGT 2 cut(s) 451, 859
MaeIII GTNAC 2 cut(s) 556, 985
MalI GATC 3 cut(s) 552, 735, 816
MboI GATC 3 cut(s) 550, 733, 814
MboII GAAGA 4 cut(s) 236, 450, 799, 937
MflI RGATCY 1 cut(s) 550
MluCI AATT 4 cut(s) 529, 892, 936, 966
MlyI GAGTC 5 cut(s) 137, 491, 609, 818, 879
MmeI TCCRAC 2 cut(s) 76, 880
MnlI CCTC 4 cut(s) 73, 290, 847, 869
MroNI GCCGGC 1 cut(s) 275
MseI TTAA 5 cut(s) 26, 194, 293, 777, 897
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 288
MspI CCGG 2 cut(s) 276, 435
MspR9I CCNGG 3 cut(s) 186, 348, 486
Mva1269I GAATGC 1 cut(s) 204
MvaI CCWGG 3 cut(s) 186, 348, 486
MvnI CGCG 3 cut(s) 93, 109, 288
MwoI GCNNNNNNNGC 3 cut(s) 37, 285, 383
NaeI GCCGGC 1 cut(s) 277
NdeII GATC 3 cut(s) 550, 733, 814
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 4 cut(s) 117, 212, 345, 505
NlaIV GGNNCC 2 cut(s) 429, 721
NmuCI GTSAC 1 cut(s) 556
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 806
PasI CCCWGGG 1 cut(s) 347
PctI GAATGC 1 cut(s) 204
PdiI GCCGGC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 392, 414
PkrI GCNGC 6 cut(s) 230, 340, 385, 749, 955, 974
PleI GAGTC 5 cut(s) 136, 491, 609, 817, 878
PpsI GAGTC 5 cut(s) 136, 491, 609, 817, 878
Psp1406I AACGTT 1 cut(s) 859
Psp6I CCWGG 3 cut(s) 184, 346, 484
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 3 cut(s) 184, 346, 484
PspN4I GGNNCC 2 cut(s) 429, 721
PspPI GGNCC 2 cut(s) 254, 278
PspXI VCTCGAGB 1 cut(s) 806
PsuI RGATCY 1 cut(s) 550
RsaI GTAC 3 cut(s) 5, 510, 804
RsaNI GTAC 3 cut(s) 4, 509, 803
RseI CAYNNNNRTG 1 cut(s) 207
SacII CCGCGG 1 cut(s) 289
SaqAI TTAA 5 cut(s) 26, 194, 293, 777, 897
SatI GCNGC 6 cut(s) 229, 339, 384, 748, 954, 973
Sau3AI GATC 3 cut(s) 550, 733, 814
Sau96I GGNCC 2 cut(s) 254, 278
SchI GAGTC 5 cut(s) 137, 491, 609, 818, 879
ScrFI CCNGG 3 cut(s) 186, 348, 486
SfaNI GCATC 5 cut(s) 307, 473, 637, 754, 823
SfcI CTRYAG 2 cut(s) 610, 651
Sfr274I CTCGAG 1 cut(s) 806
Sfr303I CCGCGG 1 cut(s) 289
SgrBI CCGCGG 1 cut(s) 289
SinI GGWCC 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 806
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 546, 806
SmoI CTYRAG 2 cut(s) 546, 806
SphI GCATGC 1 cut(s) 345
Sse9I AATT 4 cut(s) 529, 892, 936, 966
SsiI CCGC 7 cut(s) 91, 286, 288, 339, 591, 953, 973
SspMI CTAG 3 cut(s) 380, 492, 737
StyD4I CCNGG 3 cut(s) 184, 346, 484
StyI CCWWGG 2 cut(s) 45, 408
TaaI ACNGT 3 cut(s) 8, 148, 254
TaiI ACGT 2 cut(s) 454, 862
TaqI TCGA 3 cut(s) 312, 417, 807
TasI AATT 4 cut(s) 529, 892, 936, 966
TatI WGTACW 2 cut(s) 508, 802
TauI GCSGC 3 cut(s) 341, 956, 975
TfiI GAWTC 2 cut(s) 392, 414
Tru1I TTAA 5 cut(s) 26, 194, 293, 777, 897
Tru9I TTAA 5 cut(s) 26, 194, 293, 777, 897
TscAI CASTG 1 cut(s) 894
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 3 cut(s) 228, 383, 747
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 4 cut(s) 102, 447, 518, 663
TspGWI ACGGA 2 cut(s) 278, 462
TspRI CASTG 1 cut(s) 894
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 3 cut(s) 529, 892, 966
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 1 cut(s) 345
XhoI CTCGAG 1 cut(s) 806
XspI CTAG 3 cut(s) 380, 492, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.