Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001187

Physical Location & Seq

Genomic Coordinates Reverse (-)

21239102 .. 21239801

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG240200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTACCAGAAGTCCTCCATTTTCATTATGTTTCTGACCTTGCTTGCCTTGGCTACCACCTTCCCCAGCTCGGTGCAAAGCCAAAGCACCCGAGTTGGATTCTATTCCAGTTCATGTCCTAAGGCAGAGTCCATTGTCACACAAACAGTTCAGAAGCATTTCACATCCACTCCTTCCATTGCTCCTGGCTTATTGAGGATGCACTTTCATGACTGCTTTGTCCAAGGTTGTGACGCTTCTGTCCTCCTCAACGGCGCAAACACTGAAAAAACCGCTGGCCCGAACCTCGGATTGAGAGGTTGGGAAGTCATTGACGATGCAAAGACTCAGCTTGAAGCCGCATGCCTTGGTGTTGTTTCCTGTGCAGACATTCTCGCCCTAGCAGCTCGCGATTCTGTCGTCTTGACAAAGGGAATTAACTGGGACGTGCCTACCGGAAGGTTAGACGGACGAGTATCATTGGCATCTGAGGCTAAAAATATGCCTGGCCCTAGGGATTCTATTGATGTACAAAAGACCAAGTTTCAAACTTTTGGTCTCAACACTCAAGATCTTGTCACGCTTGTTGGTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

191

Amino Acids

20.47

Weight (kDa)

6.81

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	46 - 190	2.6e-54	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39580 AT5G39580 AT5G64120
fragaria_vesca	FvH4_5g21780 FvH4_5g21800 FvH4_5g24010
malus_domestica	MD00G1088300.v1.1 MD00G1088400.v1.1 MD03G1084400.v1.1 MD08G1230700.v1.1 MD08G1230800.v1.1 MD08G1230900.v1.1 MD08G1231000.v1.1 MD08G1231100.v1.1
pyrus_communis	pycom03g06660 pycom08g20060 pycom08g20070 pycom08g20080 pycom08g20090
rosa_chinensis	RchiOBHm_Chr7g0209261 RchiOBHm_Chr7g0209281 RchiOBHm_Chr7g0209291 RchiOBHm_Chr7g0209311 RchiOBHm_Chr7g0209321
rosa_laevigata	RLG00000003144 RLG00000003145 RLG00000003147 RLG00000003148 RLG00000003150
rosa_multiflora	Rmu_co8212558.1_g000001 Rmu_sc0001701.1_g000016 Rmu_sc0001701.1_g000017 Rmu_sc0037970.1_g000001 Rmu_sc0037970.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249520 Rroxscaffold_3G00249530 Rroxscaffold_3G00249550 Rroxscaffold_3G00249560 Rroxscaffold_3G00249580
rosa_rugosa	Rorug07G0111000 Rorug07G0111100 Rorug07G0111300 Rorug07G0111400
rosa_samantha	Rh7AG245300 Rh7AG245400 Rh7BG240100 Rh7BG240200 Rh7BG240400 Rh7BG240500 Rh7CG260400 Rh7CG260600 Rh7CG260700 Rh7CG260800 Rh7DG251700 Rh7DG251800
rosa_wichuraiana	Rw7G020770 Rw7G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	218, 239
AccII	CGCG	1 cut(s)	390
AciI	CCGC	2 cut(s)	273, 339
AfaI	GTAC	3 cut(s)	5, 510, 571
AfiI	CCNNNNNNNGG	2 cut(s)	70, 287
AgsI	TTSAA	2 cut(s)	335, 527
AjiI	CACGTC	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	184, 484
AluBI	AGCT	3 cut(s)	69, 331, 386
AluI	AGCT	3 cut(s)	69, 331, 386
Alw26I	GTCTC	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	2 cut(s)	277, 487
ApeKI	GCWGC	1 cut(s)	383
ArsI	GACNNNNNNTTYG	2 cut(s)	520, 552
Asp700I	GAANNNNTTC	1 cut(s)	158
AspA2I	CCTAGG	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	278, 488
AvaI	CYCGRG	1 cut(s)	90
AvrII	CCTAGG	1 cut(s)	491
AxyI	CCTNAGG	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	2 cut(s)	186, 486
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	2 cut(s)	380, 492
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	2 cut(s)	339, 384
BlnI	CCTAGG	1 cut(s)	491
BlsI	GCNGC	2 cut(s)	340, 385
Bme1390I	CCNGG	2 cut(s)	186, 486
BmeT110I	CYCGRG	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	2 cut(s)	278, 488
BmrFI	CCNGG	2 cut(s)	186, 486
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	3 cut(s)	189, 307, 473
BmuI	ACTGGG	1 cut(s)	430
BpuEI	CTTGAG	1 cut(s)	531
BsaAI	YACGTR	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	5 cut(s)	48, 223, 286, 346, 491
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 287
Bse1I	ACTGG	2 cut(s)	108, 425
Bse21I	CCTNAGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	186, 486
BseDI	CCNNGG	5 cut(s)	48, 223, 286, 346, 491
BseGI	GGATG	2 cut(s)	164, 204
BseLI	CCNNNNNNNGG	2 cut(s)	70, 287
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	341, 459
BseNI	ACTGG	2 cut(s)	108, 425
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	395
BseYI	CCCAGC	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	279, 489
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	2 cut(s)	70, 287
BsmAI	GTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	279, 489
Bso31I	GGTCTC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	90
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	1 cut(s)	550
Bsp68I	TCGCGA	1 cut(s)	390
BspACI	CCGC	2 cut(s)	273, 339
BspANI	GGCC	2 cut(s)	279, 489
BspCNI	CTCAG	2 cut(s)	340, 460
BspFNI	CGCG	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	2 cut(s)	108, 425
BssECI	CCNNGG	5 cut(s)	48, 223, 286, 346, 491
BssMI	GATC	1 cut(s)	550
BssT1I	CCWWGG	4 cut(s)	48, 223, 346, 491
Bst2UI	CCWGG	2 cut(s)	186, 486
Bst4CI	ACNGT	1 cut(s)	148
BstAUI	TGTACA	1 cut(s)	508
BstBAI	YACGTR	1 cut(s)	573
BstC8I	GCNNGC	4 cut(s)	45, 277, 343, 388
BstDEI	CTNAG	3 cut(s)	120, 327, 468
BstF5I	GGATG	2 cut(s)	164, 204
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	1 cut(s)	553
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	1 cut(s)	550
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 470
BstNI	CCWGG	2 cut(s)	186, 486
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	2 cut(s)	184, 484
BstSNI	TACGTA	1 cut(s)	573
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	279, 489
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	164, 204
BtsIMutI	CAGTG	1 cut(s)	261
BtuMI	TCGCGA	1 cut(s)	390
Cac8I	GCNNGC	4 cut(s)	45, 277, 343, 388
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	278, 488
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	4, 509, 570
CviAII	CATG	3 cut(s)	114, 209, 342
CviQI	GTAC	3 cut(s)	4, 509, 570
DdeI	CTNAG	3 cut(s)	120, 327, 468
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
DrdI	GACNNNNNNGTC	2 cut(s)	218, 239
DseDI	GACNNNNNNGTC	2 cut(s)	218, 239
Eco105I	TACGTA	1 cut(s)	573
Eco130I	CCWWGG	4 cut(s)	48, 223, 346, 491
Eco31I	GGTCTC	1 cut(s)	542
Eco81I	CCTNAGG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	184, 484
EcoT14I	CCWWGG	4 cut(s)	48, 223, 346, 491
ErhI	CCWWGG	4 cut(s)	48, 223, 346, 491
FaeI	CATG	3 cut(s)	117, 212, 345
FaiI	YATR	5 cut(s)	29, 115, 210, 343, 482
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	3 cut(s)	113, 208, 341
Fnu4HI	GCNGC	2 cut(s)	339, 384
FokI	GGATG	2 cut(s)	151, 211
Fsp4HI	GCNGC	2 cut(s)	339, 384
FspBI	CTAG	2 cut(s)	380, 492
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	2 cut(s)	339, 384
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	279, 489
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	117, 212, 345
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	5 cut(s)	99, 128, 325, 392, 497
HpaII	CCGG	1 cut(s)	435
Hpy188I	TCNGA	4 cut(s)	36, 153, 290, 469
Hpy188III	TCNNGA	4 cut(s)	209, 389, 403, 548
HpyAV	CCTTC	3 cut(s)	70, 183, 432
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	2 cut(s)	426, 572
HpyCH4V	TGCA	4 cut(s)	76, 202, 320, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 470
HpyF3I	CTNAG	3 cut(s)	120, 327, 468
HpySE526I	ACGT	2 cut(s)	426, 572
Hsp92II	CATG	3 cut(s)	117, 212, 345
HspAI	GCGC	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	550
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	3 cut(s)	189, 307, 473
MaeI	CTAG	2 cut(s)	380, 492
MaeII	ACGT	2 cut(s)	426, 572
MaeIII	GTNAC	3 cut(s)	136, 230, 556
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MflI	RGATCY	1 cut(s)	550
MluCI	AATT	1 cut(s)	414
MlyI	GAGTC	2 cut(s)	137, 319
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	7 cut(s)	25, 189, 254, 257, 290, 296, 463
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	186, 486
MvaI	CCWGG	2 cut(s)	186, 486
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	383, 470
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	3 cut(s)	117, 212, 345
NmuCI	GTSAC	3 cut(s)	136, 230, 556
NruI	TCGCGA	1 cut(s)	390
NspI	RCATGY	1 cut(s)	345
PaeI	GCATGC	1 cut(s)	345
PagI	TCATGA	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	99, 392, 497
PkrI	GCNGC	2 cut(s)	340, 385
PleI	GAGTC	2 cut(s)	136, 319
PpsI	GAGTC	2 cut(s)	136, 319
Ppu21I	YACGTR	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	184, 484
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	2 cut(s)	184, 484
PspPI	GGNCC	2 cut(s)	278, 488
PsuI	RGATCY	1 cut(s)	550
RruI	TCGCGA	1 cut(s)	390
RsaI	GTAC	3 cut(s)	5, 510, 571
RsaNI	GTAC	3 cut(s)	4, 509, 570
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	339, 384
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	2 cut(s)	278, 488
SchI	GAGTC	2 cut(s)	137, 319
ScrFI	CCNGG	2 cut(s)	186, 486
SfaNI	GCATC	3 cut(s)	189, 307, 473
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
SnaBI	TACGTA	1 cut(s)	573
SphI	GCATGC	1 cut(s)	345
Sse9I	AATT	1 cut(s)	414
SsiI	CCGC	2 cut(s)	273, 339
SspMI	CTAG	2 cut(s)	380, 492
StyD4I	CCNGG	2 cut(s)	184, 484
StyI	CCWWGG	4 cut(s)	48, 223, 346, 491
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	2 cut(s)	429, 575
TasI	AATT	1 cut(s)	414
TatI	WGTACW	1 cut(s)	508
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	3 cut(s)	99, 392, 497
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	3 cut(s)	136, 230, 556
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	3 cut(s)	136, 230, 556
TspDTI	ATGAA	3 cut(s)	13, 102, 197
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	1 cut(s)	268
XceI	RCATGY	1 cut(s)	345
XmaJI	CCTAGG	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	2 cut(s)	380, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.