MD03G1084400.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0001187
Physical Location & Seq
Forward (+)
6813999 .. 6814865
867 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1084400.v1.1.491

Sequence Viewer

Length: 489 bp
ATGGATTCGCAAAAACAAAAGTTTGCAGACAAGGGGCTAAACACGCAGGATCTTGTTGCCCTTCTTGGAGCACATACAATAGGAACATCGGCTTGCCAGTTCTTCAGTTACAGAATATTCAATTTCACAACTACTGGAAATGGTGCGGATCCTGCGCTTGACCCATCATTTGTTCCTCAGCTACAAACTCTCTGCCCGCAAAATTCTGATGGTACGAGGCGCATTGGATTAGACACAGGCAGTGCCGACAAATTTGATGTATCTTTTTTTGCAAATTTAAGAAAAGGCAGAGGAATTCTCGAGTCCGATCAGATGCTATGGACTGATGCTACAACAAAACCCTTTGTCCAACGTTTTCTAGGTGGTAAAGGCCCTTCTGGATTGAACTTCTATTTGGAGTTCGGAAAGTCCATGGTGAAGATGAGTAACATTGATGTGAAAACCGGCACACAAGGTCAAATTCGAAAAGTATGTTCTGTGATAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

163

Amino Acids

17.7

Weight (kDa)

9.07

Isoelectric Point (pI)

27.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 3 - 119 2.8e-31 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 146, 197
AclI AACGTT 1 cut(s) 352
AclWI GGATC 3 cut(s) 57, 143, 156
AcsI RAATTY 5 cut(s) 202, 251, 274, 294, 459
AcuI CTGAAG 1 cut(s) 88
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 2 cut(s) 121, 385
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 73
AlwI GGATC 3 cut(s) 57, 143, 156
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 1 cut(s) 370
ApoI RAATTY 5 cut(s) 202, 251, 274, 294, 459
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspLEI GCGC 2 cut(s) 157, 222
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 427
AsuII TTCGAA 1 cut(s) 463
AvaI CYCGRG 1 cut(s) 299
BamHI GGATCC 1 cut(s) 148
BarI GAAGNNNNNNTAC 2 cut(s) 358, 390
Bbv12I GWGCWC 1 cut(s) 73
BbvCI CCTCAGC 1 cut(s) 177
BccI CCATC 2 cut(s) 172, 203
BfaI CTAG 1 cut(s) 359
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 150
BmsI GCATC 2 cut(s) 303, 316
BplI GAGNNNNNCTC 2 cut(s) 282, 314
Bpu10I CCTNAGC 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 411
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 97, 139
BseDI CCNNGG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 97, 139
BshFI GGCC 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 1 cut(s) 444
BsnI GGCC 1 cut(s) 372
BsoBI CYCGRG 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 3 cut(s) 49, 148, 307
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 2 cut(s) 146, 197
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 3 cut(s) 57, 143, 156
BspT104I TTCGAA 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 443
BsrI ACTGG 2 cut(s) 97, 139
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 3 cut(s) 49, 148, 307
BssT1I CCWWGG 1 cut(s) 411
BstBI TTCGAA 1 cut(s) 463
BstC8I GCNNGC 2 cut(s) 94, 197
BstDEI CTNAG 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 411
BstHHI GCGC 2 cut(s) 157, 222
BstKTI GATC 3 cut(s) 52, 151, 310
BstMBI GATC 3 cut(s) 49, 148, 307
BstMWI GCNNNNNNNGC 2 cut(s) 43, 152
BstX2I RGATCY 2 cut(s) 49, 148
BstYI RGATCY 2 cut(s) 49, 148
BsuRI GGCC 1 cut(s) 372
BtgI CCRYGG 1 cut(s) 411
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 94, 197
CfoI GCGC 2 cut(s) 157, 222
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 412
CviJI RGCY 4 cut(s) 37, 92, 181, 372
CviKI_1 RGCY 4 cut(s) 37, 92, 181, 372
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 177
DpnI GATC 3 cut(s) 51, 150, 309
DpnII GATC 3 cut(s) 49, 148, 307
Eco130I CCWWGG 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 1 cut(s) 415
FaiI YATR 4 cut(s) 75, 319, 413, 472
FatI CATG 1 cut(s) 411
FauI CCCGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 359
GlaI GCGC 2 cut(s) 156, 221
HaeIII GGCC 1 cut(s) 372
HapII CCGG 1 cut(s) 444
HhaI GCGC 2 cut(s) 157, 222
Hin1II CATG 1 cut(s) 415
Hin6I GCGC 2 cut(s) 155, 220
HinP1I GCGC 2 cut(s) 155, 220
HinfI GANTC 2 cut(s) 5, 302
HpaII CCGG 1 cut(s) 444
HphI GGTGA 1 cut(s) 427
Hpy188I TCNGA 4 cut(s) 208, 307, 312, 404
Hpy188III TCNNGA 2 cut(s) 299, 378
HpyAV CCTTC 2 cut(s) 71, 384
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 2 cut(s) 26, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 152
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 1 cut(s) 415
HspAI GCGC 2 cut(s) 155, 220
Kzo9I GATC 3 cut(s) 49, 148, 307
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 7 cut(s) 32, 110, 120, 165, 222, 363, 457
LweI GCATC 2 cut(s) 303, 316
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 2 cut(s) 107, 425
MalI GATC 3 cut(s) 51, 150, 309
MboI GATC 3 cut(s) 49, 148, 307
MboII GAAGA 2 cut(s) 94, 430
MflI RGATCY 2 cut(s) 49, 148
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 6 cut(s) 121, 202, 251, 274, 294, 459
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 3 cut(s) 186, 210, 284
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 434
MspI CCGG 1 cut(s) 444
MwoI GCNNNNNNNGC 2 cut(s) 43, 152
NcoI CCATGG 1 cut(s) 411
NdeII GATC 3 cut(s) 49, 148, 307
NlaIII CATG 1 cut(s) 415
NlaIV GGNNCC 1 cut(s) 150
NspV TTCGAA 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 299
PfeI GAWTC 1 cut(s) 5
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp1406I AACGTT 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 371
PsuI RGATCY 2 cut(s) 49, 148
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 1 cut(s) 278
Sau3AI GATC 3 cut(s) 49, 148, 307
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 1 cut(s) 73
SetI ASST 4 cut(s) 183, 355, 364, 457
SfaNI GCATC 2 cut(s) 303, 316
Sfr274I CTCGAG 1 cut(s) 299
SfuI TTCGAA 1 cut(s) 463
SlaI CTCGAG 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 6 cut(s) 121, 202, 251, 274, 294, 459
SsiI CCGC 2 cut(s) 146, 197
SspI AATATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 411
TaiI ACGT 1 cut(s) 355
TaqI TCGA 2 cut(s) 300, 463
TasI AATT 6 cut(s) 121, 202, 251, 274, 294, 459
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 247
TspRI CASTG 1 cut(s) 247
XapI RAATTY 5 cut(s) 202, 251, 274, 294, 459
XhoI CTCGAG 1 cut(s) 299
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.