pycom03g06660

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001187
Physical Location & Seq
Forward (+)
5214090 .. 5215609
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g06660.1

Sequence Viewer

Length: 999 bp
ATGGAGGGTTCAGGTTCAACTGCCACTCGAACATTAAGTTACTTGTTGATGTTGTTGATGTTGGCTGCAACCTCAGAGTCAGTGAGAGGGCAAGGCACAAAACTAGGGTTCTACTCATTTACTTGTCCTCGAGCTGAGTTCATCGTGAGGTCAATAGTTACAGCTCATTTCCAGTCTGATCCTACCATTGCCTCTGGCCTGCTGAGGATGCATTTTCATGATTGCTTCGTCAATGGCTGTGATGCTTCCATCCTCATCGATGGTCCAACAGCCGAGAAAAACGCCCCTCCAAACCTCAATTTAAGAGGATATGAAGTCATTGATGATGCTAAGGCACAGCTTGAAGCCGCATGCCCAGGGATTGTCTCTTGCGCTGATATTCTAGCCCTAGCTGCACGTGATTCTGTGGTTCTGACCAACGGACAAAGTTGGCCAGTGCCTACAGGACGCAGGGATGGGATGGTTTCATTAGCATCTGATACAGCCAACTTGCCAGGCTTCACTGAATCAATGGATTCGCAAAAACAAAAGTTTGCAGACAAGGGGCTAAACACGCAGGATCTTGTTGCCCTTCTTGGAGCACATACAATAGGAACATCGGCTTGTCAGTTCTTCAGTTACAGATTATTCAATTTCACAACTACTGGAAATGGTGCGGATCCTGCACTCGACCCATCGTTTGTTCCTCAGCTACAAGCTCTCTGCCCGCAAAATTCTGATGGTACGAGGCGCATTGGATTAGACACAGGCAGTGCCGACAAATTTGATGTTTCATTTTTTGCAAATTTAAGAAAAGGCAGAGGAATTCTCGAGTCCGATCAGATGCTATGGACTGATGCTACAACAAAACCCTTTGTCCAACGTTTTCTAGGTGGTAAAGGCCCTTCGGGATTGAACTTCTATATGGAGTTCGGAAAGTCCATGGTGAAGATGAGTAACATTGATGTGAAAACTGGCACACAAGGTCAAATTCGAAAAGTATGTTCTGCGATAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

333

Amino Acids

35.66

Weight (kDa)

6.43

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 289 3.4e-86 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 348, 656, 707
AclI AACGTT 1 cut(s) 862
AclWI GGATC 4 cut(s) 173, 567, 653, 666
AcoI YGGCCR 1 cut(s) 431
AcsI RAATTY 5 cut(s) 712, 761, 784, 804, 969
AcuI CTGAAG 1 cut(s) 598
AcvI CACGTG 1 cut(s) 398
AfaI GTAC 1 cut(s) 724
AgsI TTSAA 4 cut(s) 18, 344, 631, 895
AjnI CCWGG 2 cut(s) 355, 493
AluBI AGCT 6 cut(s) 134, 164, 340, 392, 691, 698
AluI AGCT 6 cut(s) 134, 164, 340, 392, 691, 698
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 4 cut(s) 173, 567, 653, 666
Ama87I CYCGRG 2 cut(s) 129, 809
AoxI GGCC 3 cut(s) 196, 431, 880
ApeKI GCWGC 2 cut(s) 65, 392
ApoI RAATTY 5 cut(s) 712, 761, 784, 804, 969
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AspLEI GCGC 2 cut(s) 374, 732
AspS9I GGNCC 2 cut(s) 263, 881
AsuHPI GGTGA 1 cut(s) 937
AsuII TTCGAA 1 cut(s) 973
AvaI CYCGRG 2 cut(s) 129, 809
AvaII GGWCC 1 cut(s) 263
BalI TGGCCA 1 cut(s) 433
BamHI GGATCC 1 cut(s) 658
BarI GAAGNNNNNNTAC 2 cut(s) 868, 900
BbrPI CACGTG 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 583
BbvCI CCTCAGC 2 cut(s) 203, 687
BbvI GCAGC 2 cut(s) 52, 379
BccI CCATC 6 cut(s) 254, 257, 449, 454, 682, 713
BciT130I CCWGG 2 cut(s) 357, 495
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 4 cut(s) 104, 383, 389, 869
BfmI CTRYAG 1 cut(s) 441
BisI GCNGC 3 cut(s) 66, 348, 393
BlsI GCNGC 3 cut(s) 67, 349, 394
Bme1390I CCNGG 2 cut(s) 357, 495
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 2 cut(s) 129, 809
BmgT120I GGNCC 2 cut(s) 263, 881
BmiI GGNNCC 1 cut(s) 660
BmrFI CCNGG 2 cut(s) 357, 495
BmsI GCATC 6 cut(s) 198, 232, 316, 482, 813, 826
BplI GAGNNNNNCTC 2 cut(s) 792, 824
Bpu10I CCTNAGC 3 cut(s) 203, 330, 687
Bpu14I TTCGAA 1 cut(s) 973
Bsa29I ATCGAT 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 398
BsaJI CCNNGG 3 cut(s) 355, 356, 921
Bse1I ACTGG 4 cut(s) 172, 434, 649, 958
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 2 cut(s) 357, 495
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 355, 356, 921
BseGI GGATG 4 cut(s) 213, 249, 460, 465
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 4 cut(s) 87, 126, 194, 701
BseNI ACTGG 4 cut(s) 172, 434, 649, 958
BseXI GCAGC 2 cut(s) 52, 379
BsgI GTGCAG 2 cut(s) 378, 648
BshFI GGCC 3 cut(s) 198, 433, 882
BshVI ATCGAT 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 583
BsiHKCI CYCGRG 2 cut(s) 129, 809
BsmAI GTCTC 1 cut(s) 370
BsnI GGCC 3 cut(s) 198, 433, 882
BsoBI CYCGRG 2 cut(s) 129, 809
Bsp119I TTCGAA 1 cut(s) 973
Bsp1286I GDGCHC 1 cut(s) 583
Bsp143I GATC 4 cut(s) 178, 559, 658, 817
Bsp19I CCATGG 1 cut(s) 921
BspACI CCGC 3 cut(s) 348, 656, 707
BspANI GGCC 3 cut(s) 198, 433, 882
BspCNI CTCAG 4 cut(s) 86, 127, 195, 700
BspDI ATCGAT 1 cut(s) 258
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 660
BspPI GGATC 4 cut(s) 173, 567, 653, 666
BspT104I TTCGAA 1 cut(s) 973
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 4 cut(s) 172, 434, 649, 958
BssECI CCNNGG 3 cut(s) 355, 356, 921
BssMI GATC 4 cut(s) 178, 559, 658, 817
BssT1I CCWWGG 1 cut(s) 921
Bst2UI CCWGG 2 cut(s) 357, 495
BstBAI YACGTR 1 cut(s) 398
BstBI TTCGAA 1 cut(s) 973
BstC8I GCNNGC 3 cut(s) 200, 352, 707
BstDEI CTNAG 5 cut(s) 73, 135, 203, 330, 687
BstDSI CCRYGG 1 cut(s) 921
BstF5I GGATG 4 cut(s) 213, 249, 460, 465
BstHHI GCGC 2 cut(s) 374, 732
BstKTI GATC 4 cut(s) 181, 562, 661, 820
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 4 cut(s) 178, 559, 658, 817
BstMWI GCNNNNNNNGC 4 cut(s) 208, 392, 553, 662
BstNI CCWGG 2 cut(s) 357, 495
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 355, 493
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 2 cut(s) 52, 379
BstX2I RGATCY 2 cut(s) 559, 658
BstYI RGATCY 2 cut(s) 559, 658
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 3 cut(s) 198, 433, 882
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 921
BtsCI GGATG 4 cut(s) 213, 249, 460, 465
BtsI GCAGTG 1 cut(s) 757
BtsIMutI CAGTG 4 cut(s) 87, 441, 501, 757
Cac8I GCNNGC 3 cut(s) 200, 352, 707
CciI TCATGA 1 cut(s) 217
CfoI GCGC 2 cut(s) 374, 732
Cfr13I GGNCC 2 cut(s) 263, 881
ClaI ATCGAT 1 cut(s) 258
CseI GACGC 1 cut(s) 456
Csp6I GTAC 1 cut(s) 723
CviAII CATG 3 cut(s) 218, 351, 922
CviQI GTAC 1 cut(s) 723
DdeI CTNAG 5 cut(s) 73, 135, 203, 330, 687
DpnI GATC 4 cut(s) 180, 561, 660, 819
DpnII GATC 4 cut(s) 178, 559, 658, 817
EaeI YGGCCR 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 921
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 598
Eco72I CACGTG 1 cut(s) 398
Eco88I CYCGRG 2 cut(s) 129, 809
EcoO109I RGGNCCY 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 804
EcoRII CCWGG 2 cut(s) 355, 493
EcoT14I CCWWGG 1 cut(s) 921
EcoT22I ATGCAT 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 921
FaeI CATG 3 cut(s) 221, 354, 925
FaiI YATR 9 cut(s) 219, 312, 352, 585, 829, 903, 905, 923, 982
FatI CATG 3 cut(s) 217, 350, 921
FauI CCCGC 1 cut(s) 714
Fnu4HI GCNGC 3 cut(s) 66, 348, 393
FokI GGATG 4 cut(s) 220, 236, 467, 472
Fsp4HI GCNGC 3 cut(s) 66, 348, 393
FspBI CTAG 4 cut(s) 104, 383, 389, 869
GlaI GCGC 2 cut(s) 373, 731
GluI GCNGC 3 cut(s) 66, 348, 393
HaeIII GGCC 3 cut(s) 198, 433, 882
HgaI GACGC 1 cut(s) 456
HhaI GCGC 2 cut(s) 374, 732
Hin1II CATG 3 cut(s) 221, 354, 925
Hin6I GCGC 2 cut(s) 372, 730
HinP1I GCGC 2 cut(s) 372, 730
HinfI GANTC 5 cut(s) 77, 401, 506, 515, 812
HphI GGTGA 1 cut(s) 937
Hpy188I TCNGA 8 cut(s) 76, 178, 414, 478, 718, 817, 822, 914
Hpy188III TCNNGA 4 cut(s) 145, 218, 809, 888
HpyAV CCTTC 2 cut(s) 581, 894
HpyCH4IV ACGT 2 cut(s) 397, 862
HpyCH4V TGCA 6 cut(s) 68, 211, 395, 536, 665, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 208, 392, 553, 662
HpyF3I CTNAG 5 cut(s) 73, 135, 203, 330, 687
HpySE526I ACGT 2 cut(s) 397, 862
Hsp92II CATG 3 cut(s) 221, 354, 925
HspAI GCGC 2 cut(s) 372, 730
Kzo9I GATC 4 cut(s) 178, 559, 658, 817
LmnI GCTCC 1 cut(s) 578
Lsp1109I GCAGC 2 cut(s) 52, 379
LweI GCATC 6 cut(s) 198, 232, 316, 482, 813, 826
MaeI CTAG 4 cut(s) 104, 383, 389, 869
MaeII ACGT 2 cut(s) 397, 862
MaeIII GTNAC 4 cut(s) 38, 157, 617, 935
MalI GATC 4 cut(s) 180, 561, 660, 819
MboI GATC 4 cut(s) 178, 559, 658, 817
MboII GAAGA 2 cut(s) 604, 940
MflI RGATCY 2 cut(s) 559, 658
MhlI GDGCHC 1 cut(s) 583
MlsI TGGCCA 1 cut(s) 433
MluCI AATT 7 cut(s) 298, 631, 712, 761, 784, 804, 969
MluNI TGGCCA 1 cut(s) 433
MlyI GAGTC 2 cut(s) 86, 821
MmeI TCCRAC 2 cut(s) 290, 883
Mox20I TGGCCA 1 cut(s) 433
Mph1103I ATGCAT 1 cut(s) 213
MscI TGGCCA 1 cut(s) 433
MseI TTAA 3 cut(s) 35, 302, 788
MslI CAYNNNNRTG 2 cut(s) 216, 944
Msp20I TGGCCA 1 cut(s) 433
MspR9I CCNGG 2 cut(s) 357, 495
MvaI CCWGG 2 cut(s) 357, 495
MwoI GCNNNNNNNGC 4 cut(s) 208, 392, 553, 662
NcoI CCATGG 1 cut(s) 921
NdeII GATC 4 cut(s) 178, 559, 658, 817
NlaIII CATG 3 cut(s) 221, 354, 925
NlaIV GGNNCC 1 cut(s) 660
NmeAIII GCCGAG 1 cut(s) 298
NsiI ATGCAT 1 cut(s) 213
NspI RCATGY 1 cut(s) 354
NspV TTCGAA 1 cut(s) 973
PaeI GCATGC 1 cut(s) 354
PaeR7I CTCGAG 2 cut(s) 129, 809
PagI TCATGA 1 cut(s) 217
PasI CCCWGGG 1 cut(s) 356
PfeI GAWTC 3 cut(s) 401, 506, 515
PkrI GCNGC 3 cut(s) 67, 349, 394
PleI GAGTC 2 cut(s) 85, 820
PmaCI CACGTG 1 cut(s) 398
PmlI CACGTG 1 cut(s) 398
PpsI GAGTC 2 cut(s) 85, 820
Ppu21I YACGTR 1 cut(s) 398
Psp1406I AACGTT 1 cut(s) 862
Psp6I CCWGG 2 cut(s) 355, 493
PspCI CACGTG 1 cut(s) 398
PspGI CCWGG 2 cut(s) 355, 493
PspN4I GGNNCC 1 cut(s) 660
PspPI GGNCC 2 cut(s) 263, 881
PspXI VCTCGAGB 1 cut(s) 129
PsuI RGATCY 2 cut(s) 559, 658
RsaI GTAC 1 cut(s) 724
RsaNI GTAC 1 cut(s) 723
RseI CAYNNNNRTG 2 cut(s) 216, 944
SaqAI TTAA 3 cut(s) 35, 302, 788
SatI GCNGC 3 cut(s) 66, 348, 393
Sau3AI GATC 4 cut(s) 178, 559, 658, 817
Sau96I GGNCC 2 cut(s) 263, 881
SchI GAGTC 2 cut(s) 86, 821
ScrFI CCNGG 2 cut(s) 357, 495
SduI GDGCHC 1 cut(s) 583
SfaNI GCATC 6 cut(s) 198, 232, 316, 482, 813, 826
SfcI CTRYAG 1 cut(s) 441
Sfr274I CTCGAG 2 cut(s) 129, 809
SfuI TTCGAA 1 cut(s) 973
SinI GGWCC 1 cut(s) 263
SlaI CTCGAG 2 cut(s) 129, 809
SmiMI CAYNNNNRTG 2 cut(s) 216, 944
SmlI CTYRAG 2 cut(s) 129, 809
SmoI CTYRAG 2 cut(s) 129, 809
SphI GCATGC 1 cut(s) 354
Sse9I AATT 7 cut(s) 298, 631, 712, 761, 784, 804, 969
SsiI CCGC 3 cut(s) 348, 656, 707
SspMI CTAG 4 cut(s) 104, 383, 389, 869
StyD4I CCNGG 2 cut(s) 355, 493
StyI CCWWGG 1 cut(s) 921
TaiI ACGT 2 cut(s) 400, 865
TaqI TCGA 6 cut(s) 28, 130, 258, 669, 810, 973
TasI AATT 7 cut(s) 298, 631, 712, 761, 784, 804, 969
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 3 cut(s) 401, 506, 515
Tru1I TTAA 3 cut(s) 35, 302, 788
Tru9I TTAA 3 cut(s) 35, 302, 788
TscAI CASTG 4 cut(s) 87, 441, 508, 757
TseI GCWGC 2 cut(s) 65, 392
TspDTI ATGAA 5 cut(s) 130, 206, 327, 456, 762
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 4 cut(s) 87, 441, 508, 757
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 5 cut(s) 712, 761, 784, 804, 969
XceI RCATGY 1 cut(s) 354
XhoI CTCGAG 2 cut(s) 129, 809
XspI CTAG 4 cut(s) 104, 383, 389, 869
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.