Rmu_sc0037970.1_g000001

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037970.1
OG0001187
Physical Location & Seq
Forward (+)
1 .. 936
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037970.1_g000001.1.cds

Sequence Viewer

Length: 685 bp
agttattgacgatgcaaagactcagcttgaagctgcatgccctggtgttgtttcatgtgcagacattctcgctctagctgcacgcgattctgtcgtcttgaccaagggaattaattggaaggtgcctaccggaaggttagacgggcgagtatcattggcatccgagactaacaatctgcctggctttagggattccattgaagtacaaaagacgaagttccaagcatttggtctcaacactcaagatcttgtcacccttgttggtggacatactattggcacttcagcttgccagttcttcaggtacagactatataacttcacaacgaccggaaatggcgcagaccctaccatcaatccttcattcgttcctcaactacgagcactttgcccacaagatggtgatgcagccaagcgtgtcgatttggacacaggcagcgcagctcaatttgatgcaacgttcttcacaaatttgaggaatggtcgaggaatactcgagtctgatcaaaagttatggactgatgcctccacaaaaagctttgtccaacgtttcttgggtgtgagaggcttgcaggcattgaacttcaatgtagagttcggaagatccatggtgaagatgagtacaatcggcctaaaatctgcagataaaggagaaattcgccgaatttgttctgcaattaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

227

Amino Acids

24.59

Weight (kDa)

8.87

Isoelectric Point (pI)

28.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 399
AccII CGCG 1 cut(s) 85
AclI AACGTT 2 cut(s) 459, 548
AclWI GGATC 1 cut(s) 598
AcsI RAATTY 3 cut(s) 470, 655, 664
AcuI CTGAAG 2 cut(s) 268, 284
AfaI GTAC 3 cut(s) 205, 306, 623
AfiI CCNNNNNNNGG 1 cut(s) 399
AgsI TTSAA 4 cut(s) 30, 201, 581, 587
AjnI CCWGG 2 cut(s) 41, 179
AluBI AGCT 6 cut(s) 26, 33, 78, 288, 444, 538
AluI AGCT 6 cut(s) 26, 33, 78, 288, 444, 538
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 2 cut(s) 159, 237
AlwI GGATC 1 cut(s) 598
Ama87I CYCGRG 1 cut(s) 495
AoxI GGCC 1 cut(s) 629
ApeKI GCWGC 5 cut(s) 33, 78, 408, 436, 441
ApoI RAATTY 3 cut(s) 470, 655, 664
AseI ATTAAT 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 668
AspLEI GCGC 2 cut(s) 342, 441
AsuHPI GGTGA 3 cut(s) 245, 414, 623
AvaI CYCGRG 1 cut(s) 495
BanI GGYRCC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 5 cut(s) 20, 65, 420, 448, 453
BccI CCATC 2 cut(s) 360, 393
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 2 cut(s) 43, 181
BclI TGATCA 1 cut(s) 503
BcoDI GTCTC 2 cut(s) 159, 237
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 640
BglII AGATCT 1 cut(s) 245
BisI GCNGC 5 cut(s) 34, 79, 409, 437, 442
BlsI GCNGC 5 cut(s) 35, 80, 410, 438, 443
Bme1390I CCNGG 2 cut(s) 43, 181
BmeT110I CYCGRG 1 cut(s) 495
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 43, 181
BmsI GCATC 5 cut(s) 2, 168, 395, 443, 512
BplI GAGNNNNNCTC 2 cut(s) 478, 510
BpuEI CTTGAG 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 41, 103, 607
BsaWI WCCGGW 2 cut(s) 129, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 1 cut(s) 293
BseBI CCWGG 2 cut(s) 43, 181
BseDI CCNNGG 3 cut(s) 41, 103, 607
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 5 cut(s) 20, 65, 420, 448, 453
BsgI GTGCAG 2 cut(s) 64, 79
Bsh1236I CGCG 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 1 cut(s) 631
BshNI GGYRCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 386
BsiHKCI CYCGRG 1 cut(s) 495
BsiSI CCGG 2 cut(s) 130, 331
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 2 cut(s) 159, 237
BsnI GGCC 1 cut(s) 631
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 3 cut(s) 245, 503, 603
Bsp19I CCATGG 1 cut(s) 607
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 1 cut(s) 35
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 644
BspPI GGATC 1 cut(s) 598
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 41, 103, 607
BssMI GATC 3 cut(s) 245, 503, 603
BssT1I CCWWGG 2 cut(s) 103, 607
Bst2UI CCWGG 2 cut(s) 43, 181
BstC8I GCNNGC 5 cut(s) 38, 83, 290, 570, 574
BstDEI CTNAG 1 cut(s) 22
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 2 cut(s) 342, 441
BstKTI GATC 3 cut(s) 248, 506, 606
BstMAI GTCTC 2 cut(s) 159, 237
BstMBI GATC 3 cut(s) 245, 503, 603
BstMCI CGRYCG 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 2 cut(s) 43, 181
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 41, 179
BstSFI CTRYAG 1 cut(s) 640
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 5 cut(s) 20, 65, 420, 448, 453
BstX2I RGATCY 2 cut(s) 245, 603
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 2 cut(s) 245, 603
BsuRI GGCC 1 cut(s) 631
BtgI CCRYGG 1 cut(s) 607
BtsCI GGATG 1 cut(s) 159
Cac8I GCNNGC 5 cut(s) 38, 83, 290, 570, 574
CfoI GCGC 2 cut(s) 342, 441
Csp6I GTAC 3 cut(s) 204, 305, 622
CviAII CATG 3 cut(s) 37, 55, 608
CviQI GTAC 3 cut(s) 204, 305, 622
DdeI CTNAG 1 cut(s) 22
DpnI GATC 3 cut(s) 247, 505, 605
DpnII GATC 3 cut(s) 245, 503, 603
Eco130I CCWWGG 2 cut(s) 103, 607
Eco31I GGTCTC 1 cut(s) 237
Eco57I CTGAAG 2 cut(s) 268, 284
Eco88I CYCGRG 1 cut(s) 495
EcoRII CCWGG 2 cut(s) 41, 179
EcoT14I CCWWGG 2 cut(s) 103, 607
ErhI CCWWGG 2 cut(s) 103, 607
FaeI CATG 3 cut(s) 40, 58, 611
FaiI YATR 7 cut(s) 38, 56, 271, 314, 316, 515, 609
FatI CATG 3 cut(s) 36, 54, 607
FbaI TGATCA 1 cut(s) 503
Fnu4HI GCNGC 5 cut(s) 34, 79, 409, 437, 442
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 5 cut(s) 34, 79, 409, 437, 442
FspBI CTAG 1 cut(s) 75
GlaI GCGC 2 cut(s) 341, 440
GluI GCNGC 5 cut(s) 34, 79, 409, 437, 442
HaeIII GGCC 1 cut(s) 631
HapII CCGG 2 cut(s) 130, 331
HhaI GCGC 2 cut(s) 342, 441
Hin1II CATG 3 cut(s) 40, 58, 611
Hin6I GCGC 2 cut(s) 340, 439
HinP1I GCGC 2 cut(s) 340, 439
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 4 cut(s) 20, 87, 192, 498
HpaII CCGG 2 cut(s) 130, 331
HphI GGTGA 3 cut(s) 245, 414, 623
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 3 cut(s) 164, 503, 600
Hpy188III TCNNGA 2 cut(s) 98, 243
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 3 cut(s) 113, 127, 370
HpyCH4IV ACGT 2 cut(s) 459, 548
HpyCH4V TGCA 9 cut(s) 15, 36, 60, 81, 408, 456, 572, 642, 675
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 1 cut(s) 22
HpySE526I ACGT 2 cut(s) 459, 548
Hsp92II CATG 3 cut(s) 40, 58, 611
HspAI GCGC 2 cut(s) 340, 439
Ksp22I TGATCA 1 cut(s) 503
Kzo9I GATC 3 cut(s) 245, 503, 603
Lsp1109I GCAGC 5 cut(s) 20, 65, 420, 448, 453
LweI GCATC 5 cut(s) 2, 168, 395, 443, 512
MaeI CTAG 1 cut(s) 75
MaeII ACGT 2 cut(s) 459, 548
MaeIII GTNAC 1 cut(s) 251
MalI GATC 3 cut(s) 247, 505, 605
MboI GATC 3 cut(s) 245, 503, 603
MboII GAAGA 4 cut(s) 290, 455, 613, 626
MflI RGATCY 2 cut(s) 245, 603
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 7 cut(s) 109, 113, 447, 470, 655, 664, 676
MlyI GAGTC 2 cut(s) 14, 507
MmeI TCCRAC 1 cut(s) 569
MnlI CCTC 5 cut(s) 382, 469, 480, 536, 558
MroXI GAANNNNTTC 1 cut(s) 668
MseI TTAA 2 cut(s) 112, 679
MspI CCGG 2 cut(s) 130, 331
MspR9I CCNGG 2 cut(s) 43, 181
MvaI CCWGG 2 cut(s) 43, 181
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 78
NcoI CCATGG 1 cut(s) 607
NdeII GATC 3 cut(s) 245, 503, 603
NlaIII CATG 3 cut(s) 40, 58, 611
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 251
NspI RCATGY 1 cut(s) 40
PaeI GCATGC 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 2 cut(s) 87, 192
PflMI CCANNNNNTGG 1 cut(s) 399
PkrI GCNGC 5 cut(s) 35, 80, 410, 438, 443
PleI GAGTC 2 cut(s) 14, 506
PpsI GAGTC 2 cut(s) 14, 506
PshBI ATTAAT 1 cut(s) 112
Psp1406I AACGTT 2 cut(s) 459, 548
Psp6I CCWGG 2 cut(s) 41, 179
PspGI CCWGG 2 cut(s) 41, 179
PspN4I GGNNCC 1 cut(s) 124
PspXI VCTCGAGB 1 cut(s) 495
PstI CTGCAG 1 cut(s) 644
PsuI RGATCY 2 cut(s) 245, 603
RsaI GTAC 3 cut(s) 205, 306, 623
RsaNI GTAC 3 cut(s) 204, 305, 622
SaqAI TTAA 2 cut(s) 112, 679
SatI GCNGC 5 cut(s) 34, 79, 409, 437, 442
Sau3AI GATC 3 cut(s) 245, 503, 603
SchI GAGTC 2 cut(s) 14, 507
ScrFI CCNGG 2 cut(s) 43, 181
SduI GDGCHC 1 cut(s) 386
SfaNI GCATC 5 cut(s) 2, 168, 395, 443, 512
SfcI CTRYAG 1 cut(s) 640
Sfr274I CTCGAG 1 cut(s) 495
SlaI CTCGAG 1 cut(s) 495
SmlI CTYRAG 2 cut(s) 241, 495
SmoI CTYRAG 2 cut(s) 241, 495
SphI GCATGC 1 cut(s) 40
Sse9I AATT 7 cut(s) 109, 113, 447, 470, 655, 664, 676
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 41, 179
StyI CCWWGG 2 cut(s) 103, 607
TaiI ACGT 2 cut(s) 462, 551
TaqI TCGA 3 cut(s) 421, 485, 496
TasI AATT 7 cut(s) 109, 113, 447, 470, 655, 664, 676
TatI WGTACW 2 cut(s) 203, 621
TfiI GAWTC 2 cut(s) 87, 192
Tru1I TTAA 2 cut(s) 112, 679
Tru9I TTAA 2 cut(s) 112, 679
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 5 cut(s) 33, 78, 408, 436, 441
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 43, 352
Van91I CCANNNNNTGG 1 cut(s) 399
VspI ATTAAT 1 cut(s) 112
XapI RAATTY 3 cut(s) 470, 655, 664
XceI RCATGY 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.