RLG00000003145

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001187
Physical Location & Seq
Forward (+)
44862522 .. 44864064
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003145

Sequence Viewer

Length: 942 bp
ATGTACCTTAAGTCATCCATTTTGTTAATGCTTCTCTTGCTTTCCTTGGCAACAATCTTGCTTTCTGCGCAAGGTAAAGAAGTCCCCCGTGTCGGATTCTATTCGCATTCATATCCTAGAGCAGAGTCCATTGTCAAACAAACAGTTCAATCTCACTTCAAATCAGATCCTACCATTGCTCCTGGCTTATTAAGGATGCACTTCAATGACTGCTTTCTTCAAGGCTGCGATGGTTCTGTTCTTCTCGACGGTCCAAGCACTGAAAAAACTGCTGGCCCTAACCGCGGATTAAGAGGTTGGGAAGTTATCAACGATGCCAAGACAAAGCTTGAAGGCTTGAAGCCTCATGCCCTAGGGTTGTTTCCTACCAAGGGAATCAATTGGAAGGTGCCTACTGGAAGATTAGACGGACGTATTTCATTGGCATCGGAGACTTCAGCTTTGCCTGGCTTTAGAGACTCCATGAAAATACAAAAGGACAAGTTCAAAAATTTGGGTCTCAACACTCAAGATCTTGTCACTCTTGTTGGTGGACACACCATTGGCACTACTGCTTCCCAGTTATTCAGCTACAGACTCTATAACTTCAACACAACTGGAAATGGTGATGCGACACCTTCATTCCTTTCTCAATTAAAATCACTTTGCCCAGAAAATGGCGATGGAGCCAAGCGTGTTGATTTAGACATAGGCAGTGAAAACCGATTTGATGTGACATTCTTTACAAACTTGAAGAATGGGCGTGGTGTACTCGAGTCCGATCAAATGTTATGGACTGATGCCTCTACAAGAAGCTTTGTCCAACATTTCTTGGGAGTCAGAGGCTTGCGAGCATTGAATTTTAATGTAGAGTTTGGAAGGTCTATGGTGAAGATGAGTAAAATTGGTTTGAAACCTGCTGCAAAGGGTGAAATTCGCCGCATTTGTCCTGTAGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

314

Amino Acids

34.35

Weight (kDa)

9.62

Isoelectric Point (pI)

28.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 270 1.1e-56 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 904
AccB1I GGYRCC 1 cut(s) 388
AccB7I CCANNNNNTGG 1 cut(s) 656
AccII CGCG 1 cut(s) 285
AciI CCGC 3 cut(s) 283, 285, 919
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 3 cut(s) 490, 838, 912
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 2 cut(s) 5, 750
AfiI CCNNNNNNNGG 4 cut(s) 92, 284, 371, 656
AflII CTTAAG 1 cut(s) 8
AjnI CCWGG 2 cut(s) 181, 445
AluBI AGCT 4 cut(s) 328, 440, 570, 795
AluI AGCT 4 cut(s) 328, 440, 570, 795
Alw26I GTCTC 3 cut(s) 425, 450, 503
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 752
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 225, 899
ApoI RAATTY 3 cut(s) 490, 838, 912
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
AspA2I CCTAGG 1 cut(s) 352
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 251, 275
AsuHPI GGTGA 3 cut(s) 617, 880, 920
AvaI CYCGRG 1 cut(s) 752
AvaII GGWCC 1 cut(s) 251
AvrII CCTAGG 1 cut(s) 352
BanI GGYRCC 1 cut(s) 388
BbvI GCAGC 2 cut(s) 212, 886
BccI CCATC 2 cut(s) 224, 656
BciT130I CCWGG 2 cut(s) 183, 447
BcoDI GTCTC 3 cut(s) 425, 450, 503
BfaI CTAG 2 cut(s) 117, 353
BfmI CTRYAG 2 cut(s) 571, 930
BfrI CTTAAG 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 904
BglII AGATCT 1 cut(s) 511
BisI GCNGC 3 cut(s) 226, 900, 919
BlnI CCTAGG 1 cut(s) 352
BlsI GCNGC 3 cut(s) 227, 901, 920
Bme1390I CCNGG 2 cut(s) 183, 447
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 752
BmgT120I GGNCC 2 cut(s) 251, 275
BmiI GGNNCC 2 cut(s) 390, 667
BmrFI CCNGG 2 cut(s) 183, 447
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 5 cut(s) 186, 304, 434, 598, 769
BmuI ACTGGG 1 cut(s) 553
BpuEI CTTGAG 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 4 cut(s) 45, 283, 352, 369
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 284, 371, 656
Bse1I ACTGG 3 cut(s) 400, 559, 601
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 2 cut(s) 183, 447
BseDI CCNNGG 4 cut(s) 45, 283, 352, 369
BseGI GGATG 2 cut(s) 14, 201
BseLI CCNNNNNNNGG 4 cut(s) 92, 284, 371, 656
BseMI GCAATG 1 cut(s) 174
BseNI ACTGG 3 cut(s) 400, 559, 601
BseXI GCAGC 2 cut(s) 212, 886
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 752
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 4 cut(s) 92, 284, 371, 656
BsmAI GTCTC 3 cut(s) 425, 450, 503
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 503
BsoBI CYCGRG 1 cut(s) 752
Bsp143I GATC 3 cut(s) 166, 511, 760
BspACI CCGC 3 cut(s) 283, 285, 919
BspANI GGCC 1 cut(s) 276
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 390, 667
BspMI ACCTGC 1 cut(s) 904
BspPI GGATC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 388
BspTI CTTAAG 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 503
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 3 cut(s) 400, 559, 601
BssECI CCNNGG 4 cut(s) 45, 283, 352, 369
BssMI GATC 3 cut(s) 166, 511, 760
BssT1I CCWWGG 3 cut(s) 45, 352, 369
Bst2UI CCWGG 2 cut(s) 183, 447
Bst4CI ACNGT 2 cut(s) 145, 251
BstAFI CTTAAG 1 cut(s) 8
BstC8I GCNNGC 3 cut(s) 274, 827, 831
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 2 cut(s) 14, 201
BstFNI CGCG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 3 cut(s) 169, 514, 763
BstMAI GTCTC 3 cut(s) 425, 450, 503
BstMBI GATC 3 cut(s) 166, 511, 760
BstMWI GCNNNNNNNGC 3 cut(s) 37, 67, 282
BstNI CCWGG 2 cut(s) 183, 447
BstSCI CCNGG 2 cut(s) 181, 445
BstSFI CTRYAG 2 cut(s) 571, 930
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 212, 886
BstX2I RGATCY 2 cut(s) 166, 511
BstYI RGATCY 2 cut(s) 166, 511
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 283
BtgZI GCGATG 2 cut(s) 243, 675
BtsCI GGATG 2 cut(s) 14, 201
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 2 cut(s) 258, 700
BveI ACCTGC 1 cut(s) 904
Cac8I GCNNGC 3 cut(s) 274, 827, 831
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 251, 275
Cfr42I CCGCGG 1 cut(s) 286
Csp6I GTAC 2 cut(s) 4, 749
CviAII CATG 2 cut(s) 347, 463
CviQI GTAC 2 cut(s) 4, 749
DpnI GATC 3 cut(s) 168, 513, 762
DpnII GATC 3 cut(s) 166, 511, 760
Eco130I CCWWGG 3 cut(s) 45, 352, 369
Eco31I GGTCTC 1 cut(s) 503
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 752
EcoRII CCWGG 2 cut(s) 181, 445
EcoT14I CCWWGG 3 cut(s) 45, 352, 369
ErhI CCWWGG 3 cut(s) 45, 352, 369
FaeI CATG 2 cut(s) 350, 466
FaiI YATR 7 cut(s) 112, 348, 464, 582, 689, 772, 866
FaqI GGGAC 1 cut(s) 68
FatI CATG 2 cut(s) 346, 462
Fnu4HI GCNGC 3 cut(s) 226, 900, 919
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 3 cut(s) 226, 900, 919
FspBI CTAG 2 cut(s) 117, 353
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 226, 900, 919
HaeIII GGCC 1 cut(s) 276
HhaI GCGC 1 cut(s) 70
Hin1II CATG 2 cut(s) 350, 466
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HindIII AAGCTT 2 cut(s) 326, 793
HinfI GANTC 7 cut(s) 96, 125, 375, 458, 576, 755, 816
HphI GGTGA 3 cut(s) 617, 880, 920
Hpy166II GTNNAC 3 cut(s) 533, 749, 937
Hpy188I TCNGA 5 cut(s) 95, 166, 430, 760, 821
Hpy188III TCNNGA 2 cut(s) 245, 509
Hpy8I GTNNAC 3 cut(s) 533, 749, 937
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 4 cut(s) 326, 379, 627, 852
HpyCH4III ACNGT 2 cut(s) 145, 251
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 2 cut(s) 199, 902
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 67, 282
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 2 cut(s) 350, 466
HspAI GCGC 1 cut(s) 68
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 3 cut(s) 166, 511, 760
LmnI GCTCC 2 cut(s) 184, 665
Lsp1109I GCAGC 2 cut(s) 212, 886
LweI GCATC 5 cut(s) 186, 304, 434, 598, 769
MaeI CTAG 2 cut(s) 117, 353
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 2 cut(s) 517, 712
MalI GATC 3 cut(s) 168, 513, 762
MboI GATC 3 cut(s) 166, 511, 760
MboII GAAGA 5 cut(s) 209, 233, 411, 745, 883
MfeI CAATTG 1 cut(s) 379
MflI RGATCY 2 cut(s) 166, 511
MluCI AATT 6 cut(s) 379, 490, 632, 838, 882, 912
MlyI GAGTC 5 cut(s) 134, 452, 570, 764, 825
MmeI TCCRAC 2 cut(s) 73, 826
MnlI CCTC 4 cut(s) 287, 354, 793, 815
MseI TTAA 6 cut(s) 9, 26, 191, 290, 635, 843
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 183, 447
MunI CAATTG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 2 cut(s) 183, 447
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 3 cut(s) 37, 67, 282
NdeII GATC 3 cut(s) 166, 511, 760
NlaIII CATG 2 cut(s) 350, 466
NlaIV GGNNCC 2 cut(s) 390, 667
NmuCI GTSAC 2 cut(s) 517, 712
NsbI TGCGCA 1 cut(s) 69
PaeR7I CTCGAG 1 cut(s) 752
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 96, 375
PflMI CCANNNNNTGG 1 cut(s) 656
PkrI GCNGC 3 cut(s) 227, 901, 920
PleI GAGTC 5 cut(s) 133, 452, 570, 763, 824
PpsI GAGTC 5 cut(s) 133, 452, 570, 763, 824
Psp6I CCWGG 2 cut(s) 181, 445
PspGI CCWGG 2 cut(s) 181, 445
PspN4I GGNNCC 2 cut(s) 390, 667
PspPI GGNCC 2 cut(s) 251, 275
PspXI VCTCGAGB 1 cut(s) 752
PsuI RGATCY 2 cut(s) 166, 511
RsaI GTAC 2 cut(s) 5, 750
RsaNI GTAC 2 cut(s) 4, 749
RseI CAYNNNNRTG 1 cut(s) 204
SacII CCGCGG 1 cut(s) 286
SaqAI TTAA 6 cut(s) 9, 26, 191, 290, 635, 843
SatI GCNGC 3 cut(s) 226, 900, 919
Sau3AI GATC 3 cut(s) 166, 511, 760
Sau96I GGNCC 2 cut(s) 251, 275
SchI GAGTC 5 cut(s) 134, 452, 570, 764, 825
ScrFI CCNGG 2 cut(s) 183, 447
SfaNI GCATC 5 cut(s) 186, 304, 434, 598, 769
SfcI CTRYAG 2 cut(s) 571, 930
Sfr274I CTCGAG 1 cut(s) 752
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SinI GGWCC 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 752
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 3 cut(s) 8, 507, 752
SmoI CTYRAG 3 cut(s) 8, 507, 752
Sse9I AATT 6 cut(s) 379, 490, 632, 838, 882, 912
SsiI CCGC 3 cut(s) 283, 285, 919
SspMI CTAG 2 cut(s) 117, 353
StyD4I CCNGG 2 cut(s) 181, 445
StyI CCWWGG 3 cut(s) 45, 352, 369
TaaI ACNGT 2 cut(s) 145, 251
TaiI ACGT 1 cut(s) 415
TaqI TCGA 2 cut(s) 246, 753
TasI AATT 6 cut(s) 379, 490, 632, 838, 882, 912
TatI WGTACW 1 cut(s) 748
TauI GCSGC 1 cut(s) 921
TfiI GAWTC 2 cut(s) 96, 375
Tru1I TTAA 6 cut(s) 9, 26, 191, 290, 635, 843
Tru9I TTAA 6 cut(s) 9, 26, 191, 290, 635, 843
TscAI CASTG 2 cut(s) 265, 700
TseFI GTSAC 2 cut(s) 517, 712
TseI GCWGC 2 cut(s) 225, 899
Tsp45I GTSAC 2 cut(s) 517, 712
TspDTI ATGAA 4 cut(s) 99, 408, 479, 609
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 2 cut(s) 265, 700
Van91I CCANNNNNTGG 1 cut(s) 656
Vha464I CTTAAG 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 3 cut(s) 490, 838, 912
XhoI CTCGAG 1 cut(s) 752
XmaJI CCTAGG 1 cut(s) 352
XspI CTAG 2 cut(s) 117, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.