Rorug07G0111100

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001187
Physical Location & Seq
Forward (+)
8670932 .. 8672412
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0111100.1

Sequence Viewer

Length: 1398 bp
ATGCTTAAGTCAACGTTCACGCCCTTTTTCTCAACCATTCCTGCCAAACCAAGATTCCCAAAACCATTACCTTCCACTATTCTCAGAGCCTTCACACAAAGCGCACCACCTGTTCGACAAAATGCCTCACTCACCATTTTCCCACCGCCTACTTCCGCCTACGTCCACCTCCCCTTCTGCCGGAAACGCTGCCACTACTGTGACTTCACCATCATCGCTCTCGGCTCTTCTTCAAACCAACCCGAAGGCGACCCACGAATGGTGAACTATGTCCAGTTACTCTGCCGAGAAATCAATGCCACACAAGTTAAGACCAACCCACCTCTGGAAACGGTCTTTTTCGGAGGCGGCACGCCTTCTCTTGTGCCACCAAAGCTTGTTTCTTCCATTCTGGAGACGCTGAGGTTGAAATTCGGGCTGAGCTTGGATGCTGAGATATCTATGGAAATGGACCCTGGGACTTTTGATGGTGAGAAGATGAAGGGAATGATGGAGTTGGGTGTGAATAGGGTGTCATTGGGAGTTCAGGCATTTCAAGAAGAGTTGTTGAAATCTTGTGGGAGAGCACATGGTCTTAAGGAGGTTTATGATGCTATTGAAATTGTTGGGTCATGTGGGGTTGAGAATTGGAGTATGGATCTTATCTCTTCTCTGCCTCACCAGACTCCAGAAATGTGGGAAGAGAGTTTGAGGCTAACAGTCGAAGCTTGCCCTCCCCATGTGTCTGTTTATGATTTGCAAGTGGAACAAGGCACCAAATTCGGAAGATTGTACACACCAGGTGAGTTCCCATTGCCTTCTGAAACACGGTCAGCTGAATTCTATAGAATGGCATCTCGGACGCTTTCTGATGCGGGTTATGAGCACTATGAAATTAGCAGCTATGGCAAGAAGGGGTATCAGTGCAAGCACAATCTTACTTACTGGAAGAACCAGCCTTTCTATGGTTTTGGCCTCGGCTCTGCTAGCCATGTTGGTGGTGTGAGGTTTTCGAGACCAAAAATGATGAACGAGTACAATGGTTATGTGGAGAACTTGGAAAATGGGTTGGTGGATTGTGGTGGGAGTAAATATATTGATGTCAAGGACATGGCCATGGATGTTGTTATGCTCTCTCTTAGAACTTCAAGAGGTCTGGATTTGAAGTCTTTTGGAGAAGCGTACGGTAGCTCCCTTGTTGTCTCTCTTTGCGAGGTTTATAAACCTTATGTTGAAAGTGGGCATGTGGTTTTCTTAGATGAGCAGAGAAGGGCCATGACTGTAGATGAGTTGAACTCCTTCAAACTAAACGAAGAAGAGATCGAAAAAAGTCTTGCATATATCCGTCTAAGTGATCCGGATGGTTTCCTTTTATCGAATGAATTGATATCACTTGCATTTGCAGTTGTATCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

465

Amino Acids

51.86

Weight (kDa)

5.62

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 54 - 232 3.5e-24 Radical SAM superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1200
AccB1I GGYRCC 1 cut(s) 752
AccIII TCCGGA 1 cut(s) 1336
AciI CCGC 4 cut(s) 146, 156, 348, 854
AclI AACGTT 1 cut(s) 14
AclWI GGATC 2 cut(s) 645, 1328
AcoI YGGCCR 1 cut(s) 1092
AcsI RAATTY 3 cut(s) 410, 758, 818
AdeI CACNNNGTG 1 cut(s) 782
AfaI GTAC 3 cut(s) 773, 1016, 1163
AfiI CCNNNNNNNGG 4 cut(s) 180, 259, 325, 944
AflII CTTAAG 2 cut(s) 5, 575
AjnI CCWGG 2 cut(s) 454, 778
AjuI GAANNNNNNNTTGG 4 cut(s) 38, 70, 364, 396
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 6 cut(s) 376, 423, 707, 815, 882, 1170
AluI AGCT 6 cut(s) 376, 423, 707, 815, 882, 1170
Alw21I GWGCWC 2 cut(s) 568, 867
Alw26I GTCTC 3 cut(s) 389, 988, 1186
AlwI GGATC 2 cut(s) 645, 1328
Aor13HI TCCGGA 1 cut(s) 1336
AoxI GGCC 3 cut(s) 952, 1092, 1251
ApeKI GCWGC 2 cut(s) 189, 879
ApoI RAATTY 3 cut(s) 410, 758, 818
Asp700I GAANNNNTTC 1 cut(s) 1277
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 451, 1251
AsuHPI GGTGA 6 cut(s) 124, 199, 274, 482, 650, 794
AsuNHI GCTAGC 1 cut(s) 965
AvaII GGWCC 1 cut(s) 451
BalI TGGCCA 1 cut(s) 1094
BanI GGYRCC 1 cut(s) 752
Bbv12I GWGCWC 2 cut(s) 568, 867
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 176, 891
BccI CCATC 4 cut(s) 218, 461, 484, 1334
BcgI CGANNNNNNTGC 2 cut(s) 742, 776
BciT130I CCWGG 2 cut(s) 456, 780
BcoDI GTCTC 3 cut(s) 389, 988, 1186
BfaI CTAG 1 cut(s) 966
BfmI CTRYAG 2 cut(s) 823, 1260
BfrI CTTAAG 2 cut(s) 5, 575
BisI GCNGC 3 cut(s) 190, 349, 880
BlpI GCTNAGC 1 cut(s) 419
BlsI GCNGC 3 cut(s) 191, 350, 881
Bme1390I CCNGG 2 cut(s) 456, 780
Bme18I GGWCC 1 cut(s) 451
BmgT120I GGNCC 2 cut(s) 451, 1251
BmiI GGNNCC 2 cut(s) 453, 754
BmrFI CCNGG 2 cut(s) 456, 780
BmsI GCATC 4 cut(s) 418, 580, 841, 842
BmtI GCTAGC 1 cut(s) 969
BplI GAGNNNNNCTC 2 cut(s) 1259, 1291
BpmI CTGGAG 2 cut(s) 413, 651
Bpu10I CCTNAGC 1 cut(s) 401
Bpu1102I GCTNAGC 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 988
BsaJI CCNNGG 4 cut(s) 454, 455, 955, 1095
BsaWI WCCGGW 1 cut(s) 1336
BsaXI ACNNNNNCTCC 2 cut(s) 1154, 1184
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 259, 325, 944
Bse1I ACTGG 2 cut(s) 274, 929
Bse3DI GCAATG 1 cut(s) 791
BseAI TCCGGA 1 cut(s) 1336
BseBI CCWGG 2 cut(s) 456, 780
BseDI CCNNGG 4 cut(s) 454, 455, 955, 1095
BseGI GGATG 3 cut(s) 433, 1105, 1345
BseLI CCNNNNNNNGG 4 cut(s) 180, 259, 325, 944
BseMI GCAATG 1 cut(s) 791
BseMII CTCAG 4 cut(s) 97, 392, 410, 423
BseNI ACTGG 2 cut(s) 274, 929
BseXI GCAGC 2 cut(s) 176, 891
BshFI GGCC 3 cut(s) 954, 1094, 1253
BshNI GGYRCC 1 cut(s) 752
BsiHKAI GWGCWC 2 cut(s) 568, 867
BsiSI CCGG 2 cut(s) 181, 1337
BsiWI CGTACG 1 cut(s) 1161
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 4 cut(s) 180, 259, 325, 944
BsmAI GTCTC 3 cut(s) 389, 988, 1186
BsmBI CGTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 3 cut(s) 954, 1094, 1253
Bso31I GGTCTC 1 cut(s) 988
Bsp1286I GDGCHC 2 cut(s) 568, 867
Bsp13I TCCGGA 1 cut(s) 1336
Bsp1407I TGTACA 1 cut(s) 771
Bsp143I GATC 3 cut(s) 637, 1299, 1333
Bsp1720I GCTNAGC 1 cut(s) 419
Bsp19I CCATGG 1 cut(s) 1095
BspACI CCGC 4 cut(s) 146, 156, 348, 854
BspANI GGCC 3 cut(s) 954, 1094, 1253
BspCNI CTCAG 4 cut(s) 96, 393, 411, 424
BspEI TCCGGA 1 cut(s) 1336
BspLI GGNNCC 2 cut(s) 453, 754
BspOI GCTAGC 1 cut(s) 969
BspPI GGATC 2 cut(s) 645, 1328
BspQI GCTCTTC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 752
BspTI CTTAAG 2 cut(s) 5, 575
BspTNI GGTCTC 1 cut(s) 988
BsrDI GCAATG 1 cut(s) 791
BsrGI TGTACA 1 cut(s) 771
BsrI ACTGG 2 cut(s) 274, 929
BssECI CCNNGG 4 cut(s) 454, 455, 955, 1095
BssMI GATC 3 cut(s) 637, 1299, 1333
BssT1I CCWWGG 1 cut(s) 1095
Bst2UI CCWGG 2 cut(s) 456, 780
Bst4CI ACNGT 6 cut(s) 200, 334, 700, 810, 1166, 1261
Bst6I CTCTTC 5 cut(s) 232, 534, 652, 675, 1290
BstAFI CTTAAG 2 cut(s) 5, 575
BstAUI TGTACA 1 cut(s) 771
BstC8I GCNNGC 4 cut(s) 353, 709, 908, 967
BstDEI CTNAG 7 cut(s) 83, 401, 419, 432, 1118, 1234, 1328
BstDSI CCRYGG 1 cut(s) 1095
BstF5I GGATG 3 cut(s) 433, 1105, 1345
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 640, 1302, 1336
BstMAI GTCTC 3 cut(s) 389, 988, 1186
BstMBI GATC 3 cut(s) 637, 1299, 1333
BstMWI GCNNNNNNNGC 4 cut(s) 186, 373, 885, 966
BstNI CCWGG 2 cut(s) 456, 780
BstNSI RCATGY 1 cut(s) 1226
BstSCI CCNGG 2 cut(s) 454, 778
BstSFI CTRYAG 2 cut(s) 823, 1260
BstV1I GCAGC 2 cut(s) 176, 891
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 2 cut(s) 675, 977
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 3 cut(s) 954, 1094, 1253
BtgI CCRYGG 1 cut(s) 1095
BtgZI GCGATG 1 cut(s) 199
BtsCI GGATG 3 cut(s) 433, 1105, 1345
BtsIMutI CAGTG 1 cut(s) 908
Cac8I GCNNGC 4 cut(s) 353, 709, 908, 967
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 451, 1251
CseI GACGC 2 cut(s) 406, 850
CsiI ACCWGGT 1 cut(s) 778
Csp6I GTAC 3 cut(s) 772, 1015, 1162
CviAII CATG 8 cut(s) 569, 612, 719, 971, 1090, 1096, 1223, 1255
CviQI GTAC 3 cut(s) 772, 1015, 1162
DdeI CTNAG 7 cut(s) 83, 401, 419, 432, 1118, 1234, 1328
DpnI GATC 3 cut(s) 639, 1301, 1335
DpnII GATC 3 cut(s) 637, 1299, 1333
DraIII CACNNNGTG 1 cut(s) 782
EaeI YGGCCR 1 cut(s) 1092
Eam1104I CTCTTC 5 cut(s) 232, 534, 652, 675, 1290
EarI CTCTTC 5 cut(s) 232, 534, 652, 675, 1290
EciI GGCGGA 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 1095
Eco31I GGTCTC 1 cut(s) 988
Eco32I GATATC 2 cut(s) 438, 1368
Eco47I GGWCC 1 cut(s) 451
EcoRI GAATTC 1 cut(s) 818
EcoRII CCWGG 2 cut(s) 454, 778
EcoRV GATATC 2 cut(s) 438, 1368
EcoT14I CCWWGG 1 cut(s) 1095
ErhI CCWWGG 1 cut(s) 1095
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 8 cut(s) 572, 615, 722, 974, 1093, 1099, 1226, 1258
FaqI GGGAC 1 cut(s) 472
FatI CATG 8 cut(s) 568, 611, 718, 970, 1089, 1095, 1222, 1254
FauI CCCGC 1 cut(s) 847
Fnu4HI GCNGC 3 cut(s) 190, 349, 880
FokI GGATG 3 cut(s) 440, 1112, 1352
Fsp4HI GCNGC 3 cut(s) 190, 349, 880
FspBI CTAG 1 cut(s) 966
GlaI GCGC 1 cut(s) 103
GluI GCNGC 3 cut(s) 190, 349, 880
GsuI CTGGAG 2 cut(s) 413, 651
HaeIII GGCC 3 cut(s) 954, 1094, 1253
HapII CCGG 2 cut(s) 181, 1337
HgaI GACGC 2 cut(s) 406, 850
HhaI GCGC 1 cut(s) 104
Hin1II CATG 8 cut(s) 572, 615, 722, 974, 1093, 1099, 1226, 1258
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 374, 705
HinfI GANTC 2 cut(s) 54, 664
HpaII CCGG 2 cut(s) 181, 1337
HphI GGTGA 6 cut(s) 124, 199, 274, 482, 650, 794
Hpy166II GTNNAC 5 cut(s) 12, 18, 166, 265, 774
Hpy188I TCNGA 6 cut(s) 86, 344, 764, 802, 840, 850
Hpy188III TCNNGA 8 cut(s) 326, 392, 536, 668, 993, 1128, 1136, 1337
Hpy8I GTNNAC 5 cut(s) 12, 18, 166, 265, 774
HpyCH4III ACNGT 6 cut(s) 200, 334, 700, 810, 1166, 1261
HpyCH4IV ACGT 2 cut(s) 14, 162
HpyCH4V TGCA 5 cut(s) 739, 906, 1316, 1376, 1382
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 373, 885, 966
HpyF3I CTNAG 7 cut(s) 83, 401, 419, 432, 1118, 1234, 1328
HpySE526I ACGT 2 cut(s) 14, 162
Hsp92II CATG 8 cut(s) 572, 615, 722, 974, 1093, 1099, 1226, 1258
HspAI GCGC 1 cut(s) 102
Kpn2I TCCGGA 1 cut(s) 1336
Kzo9I GATC 3 cut(s) 637, 1299, 1333
LguI GCTCTTC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 1175
Lsp1109I GCAGC 2 cut(s) 176, 891
LweI GCATC 4 cut(s) 418, 580, 841, 842
MabI ACCWGGT 1 cut(s) 778
MaeI CTAG 1 cut(s) 966
MaeII ACGT 2 cut(s) 14, 162
MaeIII GTNAC 2 cut(s) 200, 276
MalI GATC 3 cut(s) 639, 1301, 1335
MboI GATC 3 cut(s) 637, 1299, 1333
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 2 cut(s) 568, 867
MlsI TGGCCA 1 cut(s) 1094
MluCI AATT 7 cut(s) 410, 600, 625, 758, 818, 873, 1361
MluNI TGGCCA 1 cut(s) 1094
MlyI GAGTC 1 cut(s) 658
Mox20I TGGCCA 1 cut(s) 1094
MroI TCCGGA 1 cut(s) 1336
MroXI GAANNNNTTC 1 cut(s) 1277
MscI TGGCCA 1 cut(s) 1094
MseI TTAA 3 cut(s) 6, 309, 576
MslI CAYNNNNRTG 3 cut(s) 198, 975, 1094
Msp20I TGGCCA 1 cut(s) 1094
MspA1I CMGCKG 1 cut(s) 815
MspCI CTTAAG 2 cut(s) 5, 575
MspI CCGG 2 cut(s) 181, 1337
MspR9I CCNGG 2 cut(s) 456, 780
MvaI CCWGG 2 cut(s) 456, 780
MwoI GCNNNNNNNGC 4 cut(s) 186, 373, 885, 966
NcoI CCATGG 1 cut(s) 1095
NdeII GATC 3 cut(s) 637, 1299, 1333
NheI GCTAGC 1 cut(s) 965
NlaIII CATG 8 cut(s) 572, 615, 722, 974, 1093, 1099, 1226, 1258
NlaIV GGNNCC 2 cut(s) 453, 754
NmeAIII GCCGAG 3 cut(s) 201, 311, 936
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 1226
OliI CACNNNNGTG 1 cut(s) 198
PasI CCCWGGG 1 cut(s) 455
PciSI GCTCTTC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 1277
PfeI GAWTC 1 cut(s) 54
Pfl23II CGTACG 1 cut(s) 1161
PkrI GCNGC 3 cut(s) 191, 350, 881
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
PsiI TTATAA 1 cut(s) 1200
Psp1406I AACGTT 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 454, 778
PspGI CCWGG 2 cut(s) 454, 778
PspLI CGTACG 1 cut(s) 1161
PspN4I GGNNCC 2 cut(s) 453, 754
PspPI GGNCC 2 cut(s) 451, 1251
PsuI RGATCY 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 3 cut(s) 773, 1016, 1163
RsaNI GTAC 3 cut(s) 772, 1015, 1162
RseI CAYNNNNRTG 3 cut(s) 198, 975, 1094
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 3 cut(s) 6, 309, 576
SatI GCNGC 3 cut(s) 190, 349, 880
Sau3AI GATC 3 cut(s) 637, 1299, 1333
Sau96I GGNCC 2 cut(s) 451, 1251
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 2 cut(s) 456, 780
SduI GDGCHC 2 cut(s) 568, 867
SexAI ACCWGGT 1 cut(s) 778
SfaNI GCATC 4 cut(s) 418, 580, 841, 842
SfcI CTRYAG 2 cut(s) 823, 1260
SinI GGWCC 1 cut(s) 451
SmiMI CAYNNNNRTG 3 cut(s) 198, 975, 1094
SmlI CTYRAG 2 cut(s) 5, 575
SmoI CTYRAG 2 cut(s) 5, 575
Sse9I AATT 7 cut(s) 410, 600, 625, 758, 818, 873, 1361
SsiI CCGC 4 cut(s) 146, 156, 348, 854
SspMI CTAG 1 cut(s) 966
StyD4I CCNGG 2 cut(s) 454, 778
StyI CCWWGG 1 cut(s) 1095
TaaI ACNGT 6 cut(s) 200, 334, 700, 810, 1166, 1261
TaiI ACGT 2 cut(s) 17, 165
TaqI TCGA 5 cut(s) 115, 702, 992, 1302, 1355
TasI AATT 7 cut(s) 410, 600, 625, 758, 818, 873, 1361
TatI WGTACW 2 cut(s) 771, 1014
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 3 cut(s) 6, 309, 576
Tru9I TTAA 3 cut(s) 6, 309, 576
TscAI CASTG 1 cut(s) 908
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 189, 879
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 4 cut(s) 494, 885, 1022, 1374
TspGWI ACGGA 2 cut(s) 1313, 1383
TspRI CASTG 1 cut(s) 908
Vha464I CTTAAG 2 cut(s) 5, 575
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 3 cut(s) 410, 758, 818
XceI RCATGY 1 cut(s) 1226
XcmI CCANNNNNNNNNTGG 2 cut(s) 322, 941
XmnI GAANNNNTTC 1 cut(s) 1277
XspI CTAG 1 cut(s) 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.