Rroxscaffold_3G00249530

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001187
Physical Location & Seq
Forward (+)
43299938 .. 43301062
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249530.1

Sequence Viewer

Length: 915 bp
ATGTACCTTGAGTCATCCATTTTGTTAATGCTTCTCTTGCTTTCCTTGGCTACAATCTTGCCCTCTGCGCAAGGTAAAGAAGTCCCCCGTGTCGGATTCTATTCGCGTTCATGTCCTAGAGCAGAGTCCATTGTCAAACAAACAGTTCAATCTCACTTCAAATCAGATCCTACCATTGCTCCTGGCTTATTAAGGATGCACTTCCATGACTGCTTTGTTCAAGGCTGCGATGGTTCTGTTCTTCTCGACGGTCCAAGCACTGAAAAAACTGCTGGCCCTAACCGCGGATTAAGAGGTTGGGAAGTTATCGACGATGCAAAGACAAAGCTTGAAGCCGCATGCCCTGGGGTTGTTTCCTGTGCGGACATTCTCGCCCTAGCTGCTCGCGATTCTGTTGTTTTGACCAAGGGAATCGATTGGAAGGTGCCTACTGGAAGATTAGACGGACGTATTTCATTGGCATCGGAGACTTCAGCTTTGCCTGGCTTTAGAGACTCCATGAAAGTACAAAAGGACAAGTTCAAAAATTTGGGTCTCAACACTCAAGATCTTGTCACTCTTGTTGGTAAGCATTATATAACTGGTGGACACACCATTGGCACTACCGCTTGCCAGTTATTCAGCTACAGACTCTATAACTTCAACACAACTGGAAATGGTGATGCTACAGACCCTACCATCAGTCCTTCATTCCTTTCTCAATTAAAATCACTTTGCCCAGAAAATGGCGATGGAGCCAAGCGTGTTGATTTAGACACAGGTAGCGAAAACCGATTTGATGCGACATTCTTTACAAACTTGAAGAATGGGCGTGGTGTACTCGAGTCCGATCAAATGTTGACTGATGCCTCGACAAGAAGCTTTGTCCAACGTTTCTTGGGAGTCAGAGGCTTGCGAGCATATATTGAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

304

Amino Acids

33.05

Weight (kDa)

8.12

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 292 2.6e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 424
AccB7I CCANNNNNTGG 1 cut(s) 725
AccII CGCG 3 cut(s) 106, 285, 387
AciI CCGC 5 cut(s) 283, 285, 336, 362, 606
AclI AACGTT 1 cut(s) 871
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 2 cut(s) 526, 908
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 3 cut(s) 5, 507, 819
AfiI CCNNNNNNNGG 3 cut(s) 92, 284, 725
AgsI TTSAA 8 cut(s) 149, 160, 221, 332, 523, 643, 802, 908
AjnI CCWGG 3 cut(s) 181, 343, 481
AluBI AGCT 5 cut(s) 328, 380, 476, 624, 861
AluI AGCT 5 cut(s) 328, 380, 476, 624, 861
Alw26I GTCTC 3 cut(s) 461, 486, 539
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 821
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 225, 380
ApoI RAATTY 2 cut(s) 526, 908
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 251, 275
AsuHPI GGTGA 1 cut(s) 671
AvaI CYCGRG 1 cut(s) 821
AvaII GGWCC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 424
BbvI GCAGC 2 cut(s) 212, 367
BccI CCATC 3 cut(s) 224, 686, 725
BciT130I CCWGG 3 cut(s) 183, 345, 483
BcoDI GTCTC 3 cut(s) 461, 486, 539
BfaI CTAG 2 cut(s) 117, 377
BfmI CTRYAG 2 cut(s) 625, 666
BglII AGATCT 1 cut(s) 547
BisI GCNGC 3 cut(s) 226, 336, 381
BlsI GCNGC 3 cut(s) 227, 337, 382
Bme1390I CCNGG 3 cut(s) 183, 345, 483
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 821
BmgT120I GGNCC 2 cut(s) 251, 275
BmiI GGNNCC 2 cut(s) 426, 736
BmrFI CCNGG 3 cut(s) 183, 345, 483
BmsI GCATC 6 cut(s) 186, 304, 470, 652, 769, 835
BpuEI CTTGAG 2 cut(s) 29, 528
Bsa29I ATCGAT 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 5 cut(s) 45, 283, 343, 344, 405
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 284, 725
Bse1I ACTGG 4 cut(s) 436, 586, 613, 655
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 3 cut(s) 183, 345, 483
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 5 cut(s) 45, 283, 343, 344, 405
BseGI GGATG 2 cut(s) 14, 201
BseLI CCNNNNNNNGG 3 cut(s) 92, 284, 725
BseMI GCAATG 1 cut(s) 174
BseNI ACTGG 4 cut(s) 436, 586, 613, 655
BseXI GCAGC 2 cut(s) 212, 367
Bsh1236I CGCG 3 cut(s) 106, 285, 387
BshFI GGCC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 424
BshVI ATCGAT 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 821
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 92, 284, 725
BsmAI GTCTC 3 cut(s) 461, 486, 539
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 821
Bsp143I GATC 3 cut(s) 166, 547, 829
Bsp68I TCGCGA 1 cut(s) 387
BspACI CCGC 5 cut(s) 283, 285, 336, 362, 606
BspANI GGCC 1 cut(s) 276
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 3 cut(s) 106, 285, 387
BspLI GGNNCC 2 cut(s) 426, 736
BspPI GGATC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 424
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 4 cut(s) 436, 586, 613, 655
BssECI CCNNGG 5 cut(s) 45, 283, 343, 344, 405
BssMI GATC 3 cut(s) 166, 547, 829
BssT1I CCWWGG 2 cut(s) 45, 405
Bst2UI CCWGG 3 cut(s) 183, 345, 483
Bst4CI ACNGT 2 cut(s) 145, 251
BstC8I GCNNGC 6 cut(s) 274, 340, 385, 610, 893, 897
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 2 cut(s) 14, 201
BstFNI CGCG 3 cut(s) 106, 285, 387
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 3 cut(s) 169, 550, 832
BstMAI GTCTC 3 cut(s) 461, 486, 539
BstMBI GATC 3 cut(s) 166, 547, 829
BstMWI GCNNNNNNNGC 4 cut(s) 37, 67, 282, 380
BstNI CCWGG 3 cut(s) 183, 345, 483
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 3 cut(s) 181, 343, 481
BstSFI CTRYAG 2 cut(s) 625, 666
BstUI CGCG 3 cut(s) 106, 285, 387
BstV1I GCAGC 2 cut(s) 212, 367
BstX2I RGATCY 2 cut(s) 166, 547
BstYI RGATCY 2 cut(s) 166, 547
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 1 cut(s) 276
BsuTUI ATCGAT 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 283
BtgZI GCGATG 2 cut(s) 243, 744
BtsCI GGATG 2 cut(s) 14, 201
BtsIMutI CAGTG 1 cut(s) 258
BtuMI TCGCGA 1 cut(s) 387
Cac8I GCNNGC 6 cut(s) 274, 340, 385, 610, 893, 897
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 251, 275
Cfr42I CCGCGG 1 cut(s) 286
ClaI ATCGAT 1 cut(s) 414
Csp6I GTAC 3 cut(s) 4, 506, 818
CviAII CATG 4 cut(s) 111, 206, 339, 499
CviQI GTAC 3 cut(s) 4, 506, 818
DpnI GATC 3 cut(s) 168, 549, 831
DpnII GATC 3 cut(s) 166, 547, 829
Eco130I CCWWGG 2 cut(s) 45, 405
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 821
EcoRII CCWGG 3 cut(s) 181, 343, 481
EcoT14I CCWWGG 2 cut(s) 45, 405
ErhI CCWWGG 2 cut(s) 45, 405
FaeI CATG 4 cut(s) 114, 209, 342, 502
FaiI YATR 9 cut(s) 112, 207, 340, 500, 576, 578, 636, 901, 903
FaqI GGGAC 1 cut(s) 68
FatI CATG 4 cut(s) 110, 205, 338, 498
Fnu4HI GCNGC 3 cut(s) 226, 336, 381
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 3 cut(s) 226, 336, 381
FspBI CTAG 2 cut(s) 117, 377
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 226, 336, 381
HaeIII GGCC 1 cut(s) 276
HhaI GCGC 1 cut(s) 70
Hin1II CATG 4 cut(s) 114, 209, 342, 502
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 840
HindII GTYRAC 1 cut(s) 840
HindIII AAGCTT 2 cut(s) 326, 859
HinfI GANTC 9 cut(s) 11, 96, 125, 389, 411, 494, 630, 824, 882
HphI GGTGA 1 cut(s) 671
Hpy166II GTNNAC 3 cut(s) 587, 818, 840
Hpy188I TCNGA 5 cut(s) 95, 166, 466, 829, 887
Hpy188III TCNNGA 3 cut(s) 245, 386, 545
Hpy8I GTNNAC 3 cut(s) 587, 818, 840
Hpy99I CGWCG 2 cut(s) 251, 314
HpyAV CCTTC 2 cut(s) 415, 696
HpyCH4III ACNGT 2 cut(s) 145, 251
HpyCH4IV ACGT 2 cut(s) 448, 871
HpyCH4V TGCA 2 cut(s) 199, 317
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 67, 282, 380
HpySE526I ACGT 2 cut(s) 448, 871
Hsp92II CATG 4 cut(s) 114, 209, 342, 502
HspAI GCGC 1 cut(s) 68
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 3 cut(s) 166, 547, 829
LmnI GCTCC 2 cut(s) 184, 734
Lsp1109I GCAGC 2 cut(s) 212, 367
LweI GCATC 6 cut(s) 186, 304, 470, 652, 769, 835
MaeI CTAG 2 cut(s) 117, 377
MaeII ACGT 2 cut(s) 448, 871
MaeIII GTNAC 1 cut(s) 553
MalI GATC 3 cut(s) 168, 549, 831
MboI GATC 3 cut(s) 166, 547, 829
MboII GAAGA 3 cut(s) 233, 447, 814
MflI RGATCY 2 cut(s) 166, 547
MluCI AATT 3 cut(s) 526, 701, 908
MlyI GAGTC 6 cut(s) 20, 134, 488, 624, 833, 891
MmeI TCCRAC 2 cut(s) 73, 892
MnlI CCTC 4 cut(s) 73, 287, 859, 881
MseI TTAA 5 cut(s) 26, 191, 290, 704, 913
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 285
MspR9I CCNGG 3 cut(s) 183, 345, 483
MvaI CCWGG 3 cut(s) 183, 345, 483
MvnI CGCG 3 cut(s) 106, 285, 387
MwoI GCNNNNNNNGC 4 cut(s) 37, 67, 282, 380
NdeII GATC 3 cut(s) 166, 547, 829
NlaIII CATG 4 cut(s) 114, 209, 342, 502
NlaIV GGNNCC 2 cut(s) 426, 736
NmuCI GTSAC 1 cut(s) 553
NruI TCGCGA 1 cut(s) 387
NsbI TGCGCA 1 cut(s) 69
NspI RCATGY 1 cut(s) 342
PaeI GCATGC 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 821
PasI CCCWGGG 1 cut(s) 344
PfeI GAWTC 3 cut(s) 96, 389, 411
PflMI CCANNNNNTGG 1 cut(s) 725
PkrI GCNGC 3 cut(s) 227, 337, 382
PleI GAGTC 6 cut(s) 19, 133, 488, 624, 832, 890
PpsI GAGTC 6 cut(s) 19, 133, 488, 624, 832, 890
Psp1406I AACGTT 1 cut(s) 871
Psp6I CCWGG 3 cut(s) 181, 343, 481
PspGI CCWGG 3 cut(s) 181, 343, 481
PspN4I GGNNCC 2 cut(s) 426, 736
PspPI GGNCC 2 cut(s) 251, 275
PspXI VCTCGAGB 1 cut(s) 821
PsuI RGATCY 2 cut(s) 166, 547
RruI TCGCGA 1 cut(s) 387
RsaI GTAC 3 cut(s) 5, 507, 819
RsaNI GTAC 3 cut(s) 4, 506, 818
RseI CAYNNNNRTG 1 cut(s) 204
SacII CCGCGG 1 cut(s) 286
SaqAI TTAA 5 cut(s) 26, 191, 290, 704, 913
SatI GCNGC 3 cut(s) 226, 336, 381
Sau3AI GATC 3 cut(s) 166, 547, 829
Sau96I GGNCC 2 cut(s) 251, 275
SchI GAGTC 6 cut(s) 20, 134, 488, 624, 833, 891
ScrFI CCNGG 3 cut(s) 183, 345, 483
SfaNI GCATC 6 cut(s) 186, 304, 470, 652, 769, 835
SfcI CTRYAG 2 cut(s) 625, 666
Sfr274I CTCGAG 1 cut(s) 821
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SinI GGWCC 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 821
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 3 cut(s) 8, 543, 821
SmoI CTYRAG 3 cut(s) 8, 543, 821
SphI GCATGC 1 cut(s) 342
Sse9I AATT 3 cut(s) 526, 701, 908
SsiI CCGC 5 cut(s) 283, 285, 336, 362, 606
SspMI CTAG 2 cut(s) 117, 377
StyD4I CCNGG 3 cut(s) 181, 343, 481
StyI CCWWGG 2 cut(s) 45, 405
TaaI ACNGT 2 cut(s) 145, 251
TaiI ACGT 2 cut(s) 451, 874
TaqI TCGA 5 cut(s) 246, 309, 414, 822, 851
TasI AATT 3 cut(s) 526, 701, 908
TatI WGTACW 2 cut(s) 505, 817
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 3 cut(s) 96, 389, 411
Tru1I TTAA 5 cut(s) 26, 191, 290, 704, 913
Tru9I TTAA 5 cut(s) 26, 191, 290, 704, 913
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 2 cut(s) 225, 380
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 4 cut(s) 99, 444, 515, 678
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 725
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 2 cut(s) 526, 908
XceI RCATGY 1 cut(s) 342
XhoI CTCGAG 1 cut(s) 821
XspI CTAG 2 cut(s) 117, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.