FvH4_5g21780

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001187
Physical Location & Seq
Reverse (-)
13166782 .. 13168052
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21780.t1

Sequence Viewer

Length: 972 bp
ATGTACCAGAAGTCCTCCTCCATTTCCGTTATGTTTCTGGCCTTGCTTGTCTTGGCTACCACCTTCCCCGGCTCGGTGCAAAGCCAAACCACCCGAGTTGGATTCTATTCCAGATCATGTCCTAGGGCAGAGTCCATTGTGACGCAAACAGTTCAGAAGCATTTCAAATCCACCCCTTCCATTGCACCTGGCTTACTGAGGATGCACTTTCATGACTGCTTTGTTCAAGGTTGTGACGGTTCTGTCCTCCTCAGCGGCCCAAACACTGAGAAAACCGCCGGCCCGAACCTCGGATTGAGAGGTTGGGAAGTTATCGACGATGCAAAGACTCAGCTTGAAGCTGCATGCCCTGGTGTTGTTTCCTGTGCTGACATTCTTGCCCTAGCTGCTCGCGATTCCGTCGTCTTGACAAAGGGAATTAACTGGAAGGTGCCTACCGGAAGGTTTGTCGGACGAGTATCATTGGCATCTGAGACTAACAATCTGCCCGGCTTTAGGGAATCCATTGATGCTCAGAAGAGCAAGTTTCAAGCTCTTGGTCTCAACACTCAAGATCTTGTCACCCTTGTTGTTCTTCAGGTACAGGCTTTAATTTACAACTTCACCACAACCGGAAACGGCGCAGACCCTACCATCGATGCTTCATTTCTTACTCAACTACGAGCACTTTGCCCCCAAGGTGGTGATGCAACCAAGCGTGTCGATTTGGACACAGGCAGCGGAACTCAATTTGATGCAGCATTCTTTAGGAACTTACAGAACGGTCGAGGAATACTAGAGTCTGATCAGAAGTTATGGACTGATGCCTCCACGAAAAGCTTTGACCAACGTTACTCGGGTGTGAGATTTAGAGGCTTGCAGGCATTGAACTTCAACGTAGAGTTTGGAAGGTCCATGGTGAAGATGAGTAATATCGGTGTCAAGTCTGCGAAAAATGGTGAAATTCACCGTATTTGTTCTGCAATCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

324

Amino Acids

34.94

Weight (kDa)

9.1

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 279 9.7e-70 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 430
AccII CGCG 1 cut(s) 393
AciI CCGC 3 cut(s) 255, 276, 720
AclI AACGTT 1 cut(s) 829
AcsI RAATTY 1 cut(s) 942
AcuI CTGAAG 1 cut(s) 560
AfaI GTAC 2 cut(s) 5, 582
AfiI CCNNNNNNNGG 4 cut(s) 73, 290, 495, 680
AgsI TTSAA 6 cut(s) 166, 227, 338, 530, 868, 874
AjnI CCWGG 2 cut(s) 187, 349
AluBI AGCT 5 cut(s) 334, 341, 386, 533, 819
AluI AGCT 5 cut(s) 334, 341, 386, 533, 819
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 2 cut(s) 467, 545
Ama87I CYCGRG 2 cut(s) 93, 835
AoxI GGCC 3 cut(s) 39, 256, 280
ApeKI GCWGC 4 cut(s) 341, 386, 717, 737
ApoI RAATTY 1 cut(s) 942
Asp700I GAANNNNTTC 1 cut(s) 161
AspA2I CCTAGG 1 cut(s) 122
AspLEI GCGC 1 cut(s) 623
AspS9I GGNCC 3 cut(s) 257, 281, 891
AsuC2I CCSGG 2 cut(s) 69, 489
AsuHPI GGTGA 6 cut(s) 553, 595, 695, 910, 938, 950
AvaI CYCGRG 2 cut(s) 93, 835
AvaII GGWCC 1 cut(s) 891
AvrII CCTAGG 1 cut(s) 122
BanI GGYRCC 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 667
BbvCI CCTCAGC 1 cut(s) 251
BbvI GCAGC 4 cut(s) 328, 373, 729, 749
BccI CCATC 1 cut(s) 641
BceAI ACGGC 1 cut(s) 634
BcgI CGANNNNNNTGC 2 cut(s) 651, 685
BciT130I CCWGG 2 cut(s) 189, 351
BclI TGATCA 1 cut(s) 784
BcnI CCSGG 2 cut(s) 69, 489
BcoDI GTCTC 2 cut(s) 467, 545
BfaI CTAG 3 cut(s) 123, 383, 776
BglII AGATCT 1 cut(s) 553
BisI GCNGC 5 cut(s) 256, 342, 387, 718, 738
BlnI CCTAGG 1 cut(s) 122
BlsI GCNGC 5 cut(s) 257, 343, 388, 719, 739
Bme1390I CCNGG 4 cut(s) 69, 189, 351, 489
Bme18I GGWCC 1 cut(s) 891
BmeT110I CYCGRG 2 cut(s) 93, 835
BmgT120I GGNCC 3 cut(s) 257, 281, 891
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 4 cut(s) 69, 189, 351, 489
BmsI GCATC 8 cut(s) 192, 310, 476, 499, 628, 676, 724, 793
Bpu10I CCTNAGC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 534
BpuMI CCSGG 2 cut(s) 69, 489
Bsa29I ATCGAT 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 6 cut(s) 67, 122, 289, 349, 676, 894
BsaWI WCCGGW 2 cut(s) 437, 611
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 290, 495, 680
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 189, 351
BseCI ATCGAT 1 cut(s) 636
BseDI CCNNGG 6 cut(s) 67, 122, 289, 349, 676, 894
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 4 cut(s) 73, 290, 495, 680
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 6 cut(s) 188, 258, 265, 344, 462, 527
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 2 cut(s) 7, 239
BseXI GCAGC 4 cut(s) 328, 373, 729, 749
Bsh1236I CGCG 1 cut(s) 393
Bsh1285I CGRYCG 1 cut(s) 766
BshFI GGCC 3 cut(s) 41, 258, 282
BshNI GGYRCC 1 cut(s) 430
BshVI ATCGAT 1 cut(s) 636
BsiEI CGRYCG 1 cut(s) 766
BsiHKAI GWGCWC 1 cut(s) 667
BsiHKCI CYCGRG 2 cut(s) 93, 835
BsiSI CCGG 5 cut(s) 69, 279, 438, 489, 612
BslI CCNNNNNNNGG 4 cut(s) 73, 290, 495, 680
BsmAI GTCTC 2 cut(s) 467, 545
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 3 cut(s) 41, 258, 282
Bso31I GGTCTC 1 cut(s) 545
BsoBI CYCGRG 2 cut(s) 93, 835
Bsp1286I GDGCHC 1 cut(s) 667
Bsp143I GATC 3 cut(s) 113, 553, 784
Bsp19I CCATGG 1 cut(s) 894
Bsp68I TCGCGA 1 cut(s) 393
BspACI CCGC 3 cut(s) 255, 276, 720
BspANI GGCC 3 cut(s) 41, 258, 282
BspCNI CTCAG 6 cut(s) 189, 259, 264, 343, 463, 526
BspDI ATCGAT 1 cut(s) 636
BspFNI CGCG 1 cut(s) 393
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 432
BspQI GCTCTTC 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 6 cut(s) 67, 122, 289, 349, 676, 894
BssMI GATC 3 cut(s) 113, 553, 784
BssT1I CCWWGG 3 cut(s) 122, 676, 894
Bst2UI CCWGG 2 cut(s) 189, 351
Bst4CI ACNGT 4 cut(s) 151, 239, 764, 950
Bst6I CTCTTC 1 cut(s) 512
BstC8I GCNNGC 5 cut(s) 280, 346, 391, 857, 861
BstDEI CTNAG 6 cut(s) 197, 251, 267, 330, 471, 513
BstDSI CCRYGG 1 cut(s) 894
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 623
BstKTI GATC 3 cut(s) 116, 556, 787
BstMAI GTCTC 2 cut(s) 467, 545
BstMBI GATC 3 cut(s) 113, 553, 784
BstMCI CGRYCG 1 cut(s) 766
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 2 cut(s) 189, 351
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 4 cut(s) 67, 187, 349, 487
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 4 cut(s) 328, 373, 729, 749
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
Bsu15I ATCGAT 1 cut(s) 636
BsuRI GGCC 3 cut(s) 41, 258, 282
BsuTUI ATCGAT 1 cut(s) 636
BtgI CCRYGG 1 cut(s) 894
BtsCI GGATG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 264
BtuMI TCGCGA 1 cut(s) 393
Cac8I GCNNGC 5 cut(s) 280, 346, 391, 857, 861
CciI TCATGA 1 cut(s) 211
CfoI GCGC 1 cut(s) 623
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 3 cut(s) 257, 281, 891
ClaI ATCGAT 1 cut(s) 636
CseI GACGC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 4, 581
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 4 cut(s) 117, 212, 345, 895
CviQI GTAC 2 cut(s) 4, 581
DdeI CTNAG 6 cut(s) 197, 251, 267, 330, 471, 513
DpnI GATC 3 cut(s) 115, 555, 786
DpnII GATC 3 cut(s) 113, 553, 784
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
Eco130I CCWWGG 3 cut(s) 122, 676, 894
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 1 cut(s) 891
Eco57I CTGAAG 1 cut(s) 560
Eco88I CYCGRG 2 cut(s) 93, 835
EcoRII CCWGG 2 cut(s) 187, 349
EcoT14I CCWWGG 3 cut(s) 122, 676, 894
ErhI CCWWGG 3 cut(s) 122, 676, 894
FaeI CATG 4 cut(s) 120, 215, 348, 898
FaiI YATR 6 cut(s) 32, 118, 213, 346, 796, 896
FatI CATG 4 cut(s) 116, 211, 344, 894
FbaI TGATCA 1 cut(s) 784
Fnu4HI GCNGC 5 cut(s) 256, 342, 387, 718, 738
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 5 cut(s) 256, 342, 387, 718, 738
FspBI CTAG 3 cut(s) 123, 383, 776
GlaI GCGC 1 cut(s) 622
GluI GCNGC 5 cut(s) 256, 342, 387, 718, 738
HaeIII GGCC 3 cut(s) 41, 258, 282
HapII CCGG 5 cut(s) 69, 279, 438, 489, 612
HgaI GACGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 623
Hin1II CATG 4 cut(s) 120, 215, 348, 898
Hin6I GCGC 1 cut(s) 621
HinP1I GCGC 1 cut(s) 621
HindIII AAGCTT 1 cut(s) 817
HinfI GANTC 6 cut(s) 102, 131, 328, 395, 500, 779
HpaII CCGG 5 cut(s) 69, 279, 438, 489, 612
HphI GGTGA 6 cut(s) 553, 595, 695, 910, 938, 950
Hpy188I TCNGA 7 cut(s) 156, 293, 452, 472, 516, 784, 789
Hpy188III TCNNGA 5 cut(s) 111, 212, 392, 406, 551
Hpy99I CGWCG 2 cut(s) 320, 404
HpyAV CCTTC 5 cut(s) 73, 186, 421, 435, 882
HpyCH4III ACNGT 4 cut(s) 151, 239, 764, 950
HpyCH4IV ACGT 2 cut(s) 829, 876
HpyCH4V TGCA 9 cut(s) 79, 185, 205, 323, 344, 689, 737, 859, 962
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 6 cut(s) 197, 251, 267, 330, 471, 513
HpySE526I ACGT 2 cut(s) 829, 876
Hsp92II CATG 4 cut(s) 120, 215, 348, 898
HspAI GCGC 1 cut(s) 621
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 3 cut(s) 113, 553, 784
LguI GCTCTTC 1 cut(s) 512
Lsp1109I GCAGC 4 cut(s) 328, 373, 729, 749
LweI GCATC 8 cut(s) 192, 310, 476, 499, 628, 676, 724, 793
MaeI CTAG 3 cut(s) 123, 383, 776
MaeII ACGT 2 cut(s) 829, 876
MaeIII GTNAC 4 cut(s) 139, 233, 559, 830
MalI GATC 3 cut(s) 115, 555, 786
MboI GATC 3 cut(s) 113, 553, 784
MboII GAAGA 3 cut(s) 529, 566, 913
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 1 cut(s) 667
MluCI AATT 4 cut(s) 417, 591, 728, 942
MlyI GAGTC 3 cut(s) 140, 322, 788
MmeI TCCRAC 2 cut(s) 79, 430
MroNI GCCGGC 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 2 cut(s) 420, 590
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 2 cut(s) 255, 720
MspI CCGG 5 cut(s) 69, 279, 438, 489, 612
MspR9I CCNGG 4 cut(s) 69, 189, 351, 489
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 2 cut(s) 189, 351
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 386
NaeI GCCGGC 1 cut(s) 280
NciI CCSGG 2 cut(s) 69, 489
NcoI CCATGG 1 cut(s) 894
NdeII GATC 3 cut(s) 113, 553, 784
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 4 cut(s) 120, 215, 348, 898
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 3 cut(s) 139, 233, 559
NruI TCGCGA 1 cut(s) 393
NspI RCATGY 1 cut(s) 348
PaeI GCATGC 1 cut(s) 348
PagI TCATGA 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 512
PctI GAATGC 1 cut(s) 740
PdiI GCCGGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 3 cut(s) 102, 395, 500
PkrI GCNGC 5 cut(s) 257, 343, 388, 719, 739
PleI GAGTC 3 cut(s) 139, 322, 787
PpsI GAGTC 3 cut(s) 139, 322, 787
Psp1406I AACGTT 1 cut(s) 829
Psp6I CCWGG 2 cut(s) 187, 349
PspGI CCWGG 2 cut(s) 187, 349
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 3 cut(s) 257, 281, 891
PsuI RGATCY 1 cut(s) 553
RruI TCGCGA 1 cut(s) 393
RsaI GTAC 2 cut(s) 5, 582
RsaNI GTAC 2 cut(s) 4, 581
RseI CAYNNNNRTG 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 512
SaqAI TTAA 2 cut(s) 420, 590
SatI GCNGC 5 cut(s) 256, 342, 387, 718, 738
Sau3AI GATC 3 cut(s) 113, 553, 784
Sau96I GGNCC 3 cut(s) 257, 281, 891
SchI GAGTC 3 cut(s) 140, 322, 788
ScrFI CCNGG 4 cut(s) 69, 189, 351, 489
SduI GDGCHC 1 cut(s) 667
SfaNI GCATC 8 cut(s) 192, 310, 476, 499, 628, 676, 724, 793
SinI GGWCC 1 cut(s) 891
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
SphI GCATGC 1 cut(s) 348
Sse9I AATT 4 cut(s) 417, 591, 728, 942
SsiI CCGC 3 cut(s) 255, 276, 720
SspMI CTAG 3 cut(s) 123, 383, 776
StyD4I CCNGG 4 cut(s) 67, 187, 349, 487
StyI CCWWGG 3 cut(s) 122, 676, 894
TaaI ACNGT 4 cut(s) 151, 239, 764, 950
TaiI ACGT 2 cut(s) 832, 879
TaqI TCGA 4 cut(s) 315, 636, 702, 766
TasI AATT 4 cut(s) 417, 591, 728, 942
TauI GCSGC 1 cut(s) 258
TfiI GAWTC 3 cut(s) 102, 395, 500
Tru1I TTAA 2 cut(s) 420, 590
Tru9I TTAA 2 cut(s) 420, 590
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 3 cut(s) 139, 233, 559
TseI GCWGC 4 cut(s) 341, 386, 717, 737
Tsp45I GTSAC 3 cut(s) 139, 233, 559
TspDTI ATGAA 2 cut(s) 200, 633
TspGWI ACGGA 2 cut(s) 16, 388
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 891
XapI RAATTY 1 cut(s) 942
XceI RCATGY 1 cut(s) 348
XmaJI CCTAGG 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 3 cut(s) 123, 383, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.