RLG00000003144

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001187
Physical Location & Seq
Reverse (-)
44856910 .. 44858088
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003144

Sequence Viewer

Length: 906 bp
ATGTCCAGAATTTTCTTTTTTATGTATATCTTGCTCATTGCTTTGGCTACCAAGGTGGTGCAAGGCCAAAACACCCGTGTCGGATTCTATTCAAGTTCATGCCCTAAAGCAGAGTCCATTGTCAAGCAAACAGTTCAAGCTCATTTCAGTTCCGATCCTTCCATTGCTCCTGGCTTGTTAAGGATGCACTTTCATGATTGCTTTGTCCAAGGTTGGGAAGTTATTGACGATGCAAAGAAGAAACTTGAAGCTGCATGCCCTGGAGTTGTTTCCTGTACTGACATTATCGCCCTTGCTGCTCGCGATTCTGTGGTCTTGACGAAGGGAATTGATTGGAAGGTTCCCACCGGGAGATTAGATGGACGAGTTTCATTAGCATCTGAAACTTCAGCTTTGCCTGGCTTCAGAGACTCCATCAAATTACAAAAGGACAAGTTCAAAGCAGTGGGTCTCAACACTCAAGATCTTGTCACTCTTGTTGGTGGACACACAATTGGTACTACAGCTTGCCAGTTTTTCAGTTACAGACTCTATAACTTCAATGCAACCGGAAATGGTGGTGTTGATCCTATCATTAGTCCTTCTTTCATTTCTCAACTACAGTCACTTTGCCCACAAAACGGTGATGGAGCCAAGCGTGTTGATTTAGACACAGGCAGCGGGAACCGATTTGATGCGACTTTCTTTACAAACTTGAAGAATGGTCGTGGGATACTCAAGTCCGATCAATTGTTATGGACTGACGCCTCAACAAGAAGCTTTGTCCAACGTTTCTTGGGTGTCAGAGGTTTACGAGCATTGAATTTCAATGCCGAGTTTGGAAGGTCCATGGTGAAGATGGGTACAATCGGTTTAAAACCTGCGCCAAAGGGAGAAATTCGCCGAATTTGTTCTGCAATTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

302

Amino Acids

32.78

Weight (kDa)

9.53

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 71 4.6e-07 Peroxidase
peroxidase PF00141 71 - 258 3e-57 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 868
AccII CGCG 1 cut(s) 303
AciI CCGC 1 cut(s) 660
AclI AACGTT 1 cut(s) 769
AclWI GGATC 2 cut(s) 149, 560
AcsI RAATTY 4 cut(s) 9, 802, 876, 885
AcuI CTGAAG 2 cut(s) 372, 388
AcyI GRCGYC 1 cut(s) 744
AfaI GTAC 3 cut(s) 277, 499, 844
AfiI CCNNNNNNNGG 2 cut(s) 214, 620
AgsI TTSAA 8 cut(s) 93, 137, 248, 439, 541, 697, 802, 808
AjnI CCWGG 3 cut(s) 169, 259, 397
AluBI AGCT 5 cut(s) 140, 251, 392, 506, 759
AluI AGCT 5 cut(s) 140, 251, 392, 506, 759
Alw26I GTCTC 2 cut(s) 402, 455
AlwI GGATC 2 cut(s) 149, 560
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 3 cut(s) 251, 296, 657
ApoI RAATTY 4 cut(s) 9, 802, 876, 885
Asp700I GAANNNNTTC 1 cut(s) 889
AspLEI GCGC 1 cut(s) 865
AspS9I GGNCC 1 cut(s) 825
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 635, 844
AvaII GGWCC 1 cut(s) 825
BaeI ACNNNNGTAYC 2 cut(s) 704, 737
BbvI GCAGC 3 cut(s) 238, 283, 669
BccI CCATC 4 cut(s) 353, 422, 620, 832
BciT130I CCWGG 3 cut(s) 171, 261, 399
BciVI GTATCC 1 cut(s) 705
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 402, 455
BfmI CTRYAG 2 cut(s) 501, 599
BfuAI ACCTGC 1 cut(s) 868
BfuI GTATCC 1 cut(s) 705
BglII AGATCT 1 cut(s) 463
BisI GCNGC 3 cut(s) 252, 297, 658
BlsI GCNGC 3 cut(s) 253, 298, 659
Bme1390I CCNGG 4 cut(s) 171, 261, 349, 399
Bme18I GGWCC 1 cut(s) 825
BmgT120I GGNCC 1 cut(s) 825
BmiI GGNNCC 3 cut(s) 342, 631, 665
BmrFI CCNGG 4 cut(s) 171, 261, 349, 399
BmsI GCATC 4 cut(s) 174, 220, 386, 664
BpmI CTGGAG 1 cut(s) 282
BpuEI CTTGAG 2 cut(s) 444, 701
BpuMI CCSGG 1 cut(s) 349
BsaHI GRCGYC 1 cut(s) 744
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 4 cut(s) 51, 208, 259, 828
BsaWI WCCGGW 1 cut(s) 548
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 620
Bse1I ACTGG 1 cut(s) 511
Bse3DI GCAATG 2 cut(s) 36, 162
BseBI CCWGG 3 cut(s) 171, 261, 399
BseDI CCNNGG 4 cut(s) 51, 208, 259, 828
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 214, 620
BseMI GCAATG 2 cut(s) 36, 162
BseNI ACTGG 1 cut(s) 511
BseXI GCAGC 3 cut(s) 238, 283, 669
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 348, 549
BslI CCNNNNNNNGG 2 cut(s) 214, 620
BsmAI GTCTC 2 cut(s) 402, 455
BsnI GGCC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 455
Bsp143I GATC 4 cut(s) 154, 463, 565, 724
Bsp19I CCATGG 1 cut(s) 828
Bsp68I TCGCGA 1 cut(s) 303
BspACI CCGC 1 cut(s) 660
BspANI GGCC 1 cut(s) 66
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 3 cut(s) 342, 631, 665
BspMI ACCTGC 1 cut(s) 868
BspPI GGATC 2 cut(s) 149, 560
BspTNI GGTCTC 1 cut(s) 455
BsrDI GCAATG 2 cut(s) 36, 162
BsrI ACTGG 1 cut(s) 511
BssECI CCNNGG 4 cut(s) 51, 208, 259, 828
BssMI GATC 4 cut(s) 154, 463, 565, 724
BssNI GRCGYC 1 cut(s) 744
BssT1I CCWWGG 3 cut(s) 51, 208, 828
Bst2UI CCWGG 3 cut(s) 171, 261, 399
Bst4CI ACNGT 3 cut(s) 133, 603, 623
BstACI GRCGYC 1 cut(s) 744
BstC8I GCNNGC 3 cut(s) 256, 301, 508
BstDSI CCRYGG 1 cut(s) 828
BstF5I GGATG 1 cut(s) 189
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 865
BstKTI GATC 4 cut(s) 157, 466, 568, 727
BstMAI GTCTC 2 cut(s) 402, 455
BstMBI GATC 4 cut(s) 154, 463, 565, 724
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 3 cut(s) 171, 261, 399
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 4 cut(s) 169, 259, 347, 397
BstSFI CTRYAG 2 cut(s) 501, 599
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 3 cut(s) 238, 283, 669
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuI GTATCC 1 cut(s) 705
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 828
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
BtuMI TCGCGA 1 cut(s) 303
BveI ACCTGC 1 cut(s) 868
Cac8I GCNNGC 3 cut(s) 256, 301, 508
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 865
Cfr13I GGNCC 1 cut(s) 825
CseI GACGC 1 cut(s) 752
Csp6I GTAC 3 cut(s) 276, 498, 843
CviAII CATG 4 cut(s) 99, 194, 255, 829
CviQI GTAC 3 cut(s) 276, 498, 843
DpnI GATC 4 cut(s) 156, 465, 567, 726
DpnII GATC 4 cut(s) 154, 463, 565, 724
DraI TTTAAA 1 cut(s) 855
Eco130I CCWWGG 3 cut(s) 51, 208, 828
Eco31I GGTCTC 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 825
Eco57I CTGAAG 2 cut(s) 372, 388
EcoRII CCWGG 3 cut(s) 169, 259, 397
EcoT14I CCWWGG 3 cut(s) 51, 208, 828
ErhI CCWWGG 3 cut(s) 51, 208, 828
FaeI CATG 4 cut(s) 102, 197, 258, 832
FaiI YATR 8 cut(s) 23, 27, 100, 195, 256, 534, 736, 830
FatI CATG 4 cut(s) 98, 193, 254, 828
FauI CCCGC 1 cut(s) 653
Fnu4HI GCNGC 3 cut(s) 252, 297, 658
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 3 cut(s) 252, 297, 658
GlaI GCGC 1 cut(s) 864
GluI GCNGC 3 cut(s) 252, 297, 658
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 1 cut(s) 66
HapII CCGG 2 cut(s) 348, 549
HgaI GACGC 1 cut(s) 752
HhaI GCGC 1 cut(s) 865
Hin1I GRCGYC 1 cut(s) 744
Hin1II CATG 4 cut(s) 102, 197, 258, 832
Hin6I GCGC 1 cut(s) 863
HinP1I GCGC 1 cut(s) 863
HindIII AAGCTT 1 cut(s) 757
HinfI GANTC 5 cut(s) 84, 113, 305, 410, 528
HpaII CCGG 2 cut(s) 348, 549
HphI GGTGA 2 cut(s) 635, 844
Hpy166II GTNNAC 2 cut(s) 485, 791
Hpy188I TCNGA 6 cut(s) 83, 154, 382, 407, 724, 785
Hpy188III TCNNGA 5 cut(s) 6, 194, 302, 316, 461
Hpy8I GTNNAC 2 cut(s) 485, 791
HpyAV CCTTC 5 cut(s) 168, 316, 331, 591, 816
HpyCH4III ACNGT 3 cut(s) 133, 603, 623
HpyCH4IV ACGT 1 cut(s) 769
HpyCH4V TGCA 6 cut(s) 61, 187, 233, 254, 545, 896
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 769
Hsp92I GRCGYC 1 cut(s) 744
Hsp92II CATG 4 cut(s) 102, 197, 258, 832
HspAI GCGC 1 cut(s) 863
Kzo9I GATC 4 cut(s) 154, 463, 565, 724
LmnI GCTCC 2 cut(s) 172, 629
Lsp1109I GCAGC 3 cut(s) 238, 283, 669
LweI GCATC 4 cut(s) 174, 220, 386, 664
MaeII ACGT 1 cut(s) 769
MaeIII GTNAC 3 cut(s) 469, 521, 603
MalI GATC 4 cut(s) 156, 465, 567, 726
MboI GATC 4 cut(s) 154, 463, 565, 724
MboII GAAGA 3 cut(s) 250, 709, 847
MfeI CAATTG 2 cut(s) 492, 728
MflI RGATCY 1 cut(s) 463
MluCI AATT 9 cut(s) 9, 327, 419, 492, 728, 802, 876, 885, 897
MlyI GAGTC 3 cut(s) 122, 404, 522
MmeI TCCRAC 2 cut(s) 61, 790
MnlI CCTC 2 cut(s) 757, 779
MroXI GAANNNNTTC 1 cut(s) 889
MseI TTAA 3 cut(s) 179, 854, 900
MslI CAYNNNNRTG 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 660
MspI CCGG 2 cut(s) 348, 549
MspR9I CCNGG 4 cut(s) 171, 261, 349, 399
MunI CAATTG 2 cut(s) 492, 728
MvaI CCWGG 3 cut(s) 171, 261, 399
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 349
NcoI CCATGG 1 cut(s) 828
NdeII GATC 4 cut(s) 154, 463, 565, 724
NlaIII CATG 4 cut(s) 102, 197, 258, 832
NlaIV GGNNCC 3 cut(s) 342, 631, 665
NmeAIII GCCGAG 1 cut(s) 838
NmuCI GTSAC 2 cut(s) 469, 603
NruI TCGCGA 1 cut(s) 303
NspI RCATGY 1 cut(s) 258
PaeI GCATGC 1 cut(s) 258
PagI TCATGA 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 889
PfeI GAWTC 2 cut(s) 84, 305
PkrI GCNGC 3 cut(s) 253, 298, 659
PleI GAGTC 3 cut(s) 121, 404, 522
PpsI GAGTC 3 cut(s) 121, 404, 522
Psp1406I AACGTT 1 cut(s) 769
Psp6I CCWGG 3 cut(s) 169, 259, 397
PspGI CCWGG 3 cut(s) 169, 259, 397
PspN4I GGNNCC 3 cut(s) 342, 631, 665
PspPI GGNCC 1 cut(s) 825
PsuI RGATCY 1 cut(s) 463
RruI TCGCGA 1 cut(s) 303
RsaI GTAC 3 cut(s) 277, 499, 844
RsaNI GTAC 3 cut(s) 276, 498, 843
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 3 cut(s) 179, 854, 900
SatI GCNGC 3 cut(s) 252, 297, 658
Sau3AI GATC 4 cut(s) 154, 463, 565, 724
Sau96I GGNCC 1 cut(s) 825
SchI GAGTC 3 cut(s) 122, 404, 522
ScrFI CCNGG 4 cut(s) 171, 261, 349, 399
SfaNI GCATC 4 cut(s) 174, 220, 386, 664
SfcI CTRYAG 2 cut(s) 501, 599
SinI GGWCC 1 cut(s) 825
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 459, 716
SmoI CTYRAG 2 cut(s) 459, 716
SphI GCATGC 1 cut(s) 258
Sse9I AATT 9 cut(s) 9, 327, 419, 492, 728, 802, 876, 885, 897
SsiI CCGC 1 cut(s) 660
StyD4I CCNGG 4 cut(s) 169, 259, 347, 397
StyI CCWWGG 3 cut(s) 51, 208, 828
TaaI ACNGT 3 cut(s) 133, 603, 623
TaiI ACGT 1 cut(s) 772
TasI AATT 9 cut(s) 9, 327, 419, 492, 728, 802, 876, 885, 897
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 2 cut(s) 84, 305
Tru1I TTAA 3 cut(s) 179, 854, 900
Tru9I TTAA 3 cut(s) 179, 854, 900
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 2 cut(s) 469, 603
TseI GCWGC 3 cut(s) 251, 296, 657
Tsp45I GTSAC 2 cut(s) 469, 603
TspDTI ATGAA 4 cut(s) 87, 182, 360, 577
TspRI CASTG 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 825
XapI RAATTY 4 cut(s) 9, 802, 876, 885
XceI RCATGY 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 835
XmnI GAANNNNTTC 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.