Rh7CG260400

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001187
Physical Location & Seq
Reverse (-)
25393076 .. 25394303
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG260400.1

Sequence Viewer

Length: 777 bp
ATGTACCAGAAGTCCTCCATGTTCATTATGTTTTTGACCTTGCTTGCCTTGGCTACCACCTTCCCCAGCTCGGTACAAAGCCAAAGCACACGAGTTGGATTCTATTCCAGTTCATGTCCTAGGGCAGAGTCCATTGTTACAGAAACAGTTCAGATTCATTTCAAATCCTCTCCCTCCATTGCTGCTGGCTTATTGAGGATGTATTTTCATGATTGCTTTGTCCAAGGTTGTGACGCATCTGTCCTCTTCAACGGCGAAAACACTGAAAAAACCGTTGTCCCGAACCTTGGATTAAGAGGTTGGGAAGTTATTGACGATGCAAAGACTCAGCTTGAAGCTGCATGCCCTAGTGTTGTTTCCTGTGCTGATATTCTCGCCCTAGCTGCTCGCGATTCTGTCTTCTTAACAAAGGGAATTAACTGGAATGTGCCTACCGGAAGGTTCGACGGACGAGTATCATTGGCATCTGAGGTTAAAAATCTGCCTAGCCCTAGGGATTCTATTGATGTACAAAAGACCAAGTTTCAAACTTTTGGTCTCAACACTCAAGATCTTGTCACGCTTGTTGAGGATGGTCGCGGGATACTCGAGTCTGATCAAAAATTATGGACTGATGCCTCCACAAAAAGCTTTGTCCAACAGTTCTTGGGTGTGAGAGGCTTGCAGGCATTGAACTTCAACATAGAGTTTGGAAGGTCCATGGTGAAGATGAGTAATATCGGTTTGAAGTCTGTAGCAAATGGTGAAATCCGCCGCATTTGTTCTGCCATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

258

Amino Acids

28.29

Weight (kDa)

7.57

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 188 1.7e-50 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccII CGCG 2 cut(s) 390, 579
AciI CCGC 3 cut(s) 579, 751, 754
AfaI GTAC 3 cut(s) 5, 75, 510
AfiI CCNNNNNNNGG 2 cut(s) 70, 287
AgsI TTSAA 7 cut(s) 163, 250, 335, 527, 673, 679, 727
AluBI AGCT 5 cut(s) 69, 331, 338, 383, 630
AluI AGCT 5 cut(s) 69, 331, 338, 383, 630
Alw26I GTCTC 1 cut(s) 542
Ama87I CYCGRG 1 cut(s) 587
ApeKI GCWGC 3 cut(s) 182, 338, 383
ArsI GACNNNNNNTTYG 2 cut(s) 520, 552
Asp700I GAANNNNTTC 1 cut(s) 147
AspA2I CCTAGG 2 cut(s) 119, 491
AspS9I GGNCC 1 cut(s) 696
AsuHPI GGTGA 2 cut(s) 715, 755
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 1 cut(s) 696
AvrII CCTAGG 2 cut(s) 119, 491
BaeI ACNNNNGTAYC 2 cut(s) 575, 608
BauI CACGAG 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 391
BbvI GCAGC 3 cut(s) 169, 325, 370
BccI CCATC 1 cut(s) 566
BceAI ACGGC 1 cut(s) 268
BciVI GTATCC 1 cut(s) 576
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 5 cut(s) 120, 348, 380, 486, 492
BfmI CTRYAG 1 cut(s) 732
BfuI GTATCC 1 cut(s) 576
BglII AGATCT 1 cut(s) 550
BisI GCNGC 4 cut(s) 183, 339, 384, 754
BlnI CCTAGG 2 cut(s) 119, 491
BlsI GCNGC 4 cut(s) 184, 340, 385, 755
Bme18I GGWCC 1 cut(s) 696
BmeT110I CYCGRG 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 696
BmsI GCATC 4 cut(s) 245, 307, 473, 604
BpiI GAAGAC 1 cut(s) 391
BpuEI CTTGAG 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 6 cut(s) 48, 119, 223, 286, 491, 699
BsaWI WCCGGW 1 cut(s) 434
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 287
Bse1I ACTGG 2 cut(s) 108, 425
Bse3DI GCAATG 1 cut(s) 177
BseDI CCNNGG 6 cut(s) 48, 119, 223, 286, 491, 699
BseGI GGATG 2 cut(s) 204, 577
BseLI CCNNNNNNNGG 2 cut(s) 70, 287
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 341, 459
BseNI ACTGG 2 cut(s) 108, 425
BseXI GCAGC 3 cut(s) 169, 325, 370
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 2 cut(s) 390, 579
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 70, 287
BsmAI GTCTC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 263
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 587
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 2 cut(s) 550, 595
Bsp19I CCATGG 1 cut(s) 699
Bsp68I TCGCGA 1 cut(s) 390
BspACI CCGC 3 cut(s) 579, 751, 754
BspCNI CTCAG 2 cut(s) 340, 460
BspFNI CGCG 2 cut(s) 390, 579
BspHI TCATGA 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 2 cut(s) 108, 425
BssECI CCNNGG 6 cut(s) 48, 119, 223, 286, 491, 699
BssMI GATC 2 cut(s) 550, 595
BssSI CACGAG 1 cut(s) 90
BssT1I CCWWGG 6 cut(s) 48, 119, 223, 286, 491, 699
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 3 cut(s) 148, 274, 642
Bst6I CTCTTC 1 cut(s) 251
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 6 cut(s) 45, 187, 343, 388, 662, 666
BstDEI CTNAG 2 cut(s) 327, 468
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 2 cut(s) 204, 577
BstFNI CGCG 2 cut(s) 390, 579
BstKTI GATC 2 cut(s) 553, 598
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 2 cut(s) 550, 595
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNSI RCATGY 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 2 cut(s) 390, 579
BstV1I GCAGC 3 cut(s) 169, 325, 370
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BsuI GTATCC 1 cut(s) 576
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 2 cut(s) 204, 577
BtsIMutI CAGTG 1 cut(s) 261
BtuMI TCGCGA 1 cut(s) 390
Cac8I GCNNGC 6 cut(s) 45, 187, 343, 388, 662, 666
CciI TCATGA 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 696
CseI GACGC 1 cut(s) 242
Csp6I GTAC 3 cut(s) 4, 74, 509
CviAII CATG 5 cut(s) 19, 114, 209, 342, 700
CviQI GTAC 3 cut(s) 4, 74, 509
DdeI CTNAG 2 cut(s) 327, 468
DpnI GATC 2 cut(s) 552, 597
DpnII GATC 2 cut(s) 550, 595
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 1 cut(s) 740
Eco130I CCWWGG 6 cut(s) 48, 119, 223, 286, 491, 699
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 587
EcoT14I CCWWGG 6 cut(s) 48, 119, 223, 286, 491, 699
ErhI CCWWGG 6 cut(s) 48, 119, 223, 286, 491, 699
FaeI CATG 5 cut(s) 22, 117, 212, 345, 703
FaiI YATR 8 cut(s) 20, 29, 115, 210, 343, 607, 683, 701
FaqI GGGAC 1 cut(s) 263
FatI CATG 5 cut(s) 18, 113, 208, 341, 699
FauI CCCGC 1 cut(s) 572
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 4 cut(s) 183, 339, 384, 754
FokI GGATG 2 cut(s) 211, 584
Fsp4HI GCNGC 4 cut(s) 183, 339, 384, 754
FspBI CTAG 5 cut(s) 120, 348, 380, 486, 492
GluI GCNGC 4 cut(s) 183, 339, 384, 754
GsaI CCCAGC 1 cut(s) 69
HapII CCGG 1 cut(s) 435
HgaI GACGC 1 cut(s) 242
Hin1II CATG 5 cut(s) 22, 117, 212, 345, 703
HindIII AAGCTT 1 cut(s) 628
HinfI GANTC 7 cut(s) 99, 128, 154, 325, 392, 497, 590
HpaII CCGG 1 cut(s) 435
HphI GGTGA 2 cut(s) 715, 755
Hpy188I TCNGA 3 cut(s) 153, 469, 595
Hpy188III TCNNGA 4 cut(s) 209, 280, 389, 548
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 3 cut(s) 70, 432, 687
HpyCH4III ACNGT 3 cut(s) 148, 274, 642
HpyCH4V TGCA 3 cut(s) 320, 341, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 2 cut(s) 327, 468
Hsp92II CATG 5 cut(s) 22, 117, 212, 345, 703
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 2 cut(s) 550, 595
LpnPI CCDG 8 cut(s) 20, 79, 121, 171, 373, 406, 448, 650
Lsp1109I GCAGC 3 cut(s) 169, 325, 370
LweI GCATC 4 cut(s) 245, 307, 473, 604
MaeI CTAG 5 cut(s) 120, 348, 380, 486, 492
MaeIII GTNAC 3 cut(s) 136, 230, 556
MalI GATC 2 cut(s) 552, 597
MboI GATC 2 cut(s) 550, 595
MboII GAAGA 3 cut(s) 238, 391, 718
MflI RGATCY 1 cut(s) 550
MluCI AATT 2 cut(s) 414, 602
MlyI GAGTC 3 cut(s) 137, 319, 599
MmeI TCCRAC 2 cut(s) 76, 661
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 5 cut(s) 293, 404, 417, 474, 771
MspI CCGG 1 cut(s) 435
MvnI CGCG 2 cut(s) 390, 579
MwoI GCNNNNNNNGC 1 cut(s) 383
NcoI CCATGG 1 cut(s) 699
NdeII GATC 2 cut(s) 550, 595
NlaIII CATG 5 cut(s) 22, 117, 212, 345, 703
NmuCI GTSAC 2 cut(s) 230, 556
NruI TCGCGA 1 cut(s) 390
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 587
PagI TCATGA 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 4 cut(s) 99, 154, 392, 497
PkrI GCNGC 4 cut(s) 184, 340, 385, 755
PleI GAGTC 3 cut(s) 136, 319, 598
PpsI GAGTC 3 cut(s) 136, 319, 598
PspFI CCCAGC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 696
PspXI VCTCGAGB 1 cut(s) 587
PsuI RGATCY 1 cut(s) 550
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 3 cut(s) 5, 75, 510
RsaNI GTAC 3 cut(s) 4, 74, 509
SaqAI TTAA 5 cut(s) 293, 404, 417, 474, 771
SatI GCNGC 4 cut(s) 183, 339, 384, 754
Sau3AI GATC 2 cut(s) 550, 595
Sau96I GGNCC 1 cut(s) 696
SchI GAGTC 3 cut(s) 137, 319, 599
SfaNI GCATC 4 cut(s) 245, 307, 473, 604
SfcI CTRYAG 1 cut(s) 732
Sfr274I CTCGAG 1 cut(s) 587
SinI GGWCC 1 cut(s) 696
SlaI CTCGAG 1 cut(s) 587
SmlI CTYRAG 2 cut(s) 546, 587
SmoI CTYRAG 2 cut(s) 546, 587
SphI GCATGC 1 cut(s) 345
Sse9I AATT 2 cut(s) 414, 602
SsiI CCGC 3 cut(s) 579, 751, 754
SspMI CTAG 5 cut(s) 120, 348, 380, 486, 492
StyI CCWWGG 6 cut(s) 48, 119, 223, 286, 491, 699
TaaI ACNGT 3 cut(s) 148, 274, 642
TaqI TCGA 2 cut(s) 444, 588
TasI AATT 2 cut(s) 414, 602
TatI WGTACW 1 cut(s) 508
TauI GCSGC 1 cut(s) 756
TfiI GAWTC 4 cut(s) 99, 154, 392, 497
Tru1I TTAA 5 cut(s) 293, 404, 417, 474, 771
Tru9I TTAA 5 cut(s) 293, 404, 417, 474, 771
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 2 cut(s) 230, 556
TseI GCWGC 3 cut(s) 182, 338, 383
Tsp45I GTSAC 2 cut(s) 230, 556
TspDTI ATGAA 4 cut(s) 13, 102, 146, 197
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 696
XceI RCATGY 1 cut(s) 345
XhoI CTCGAG 1 cut(s) 587
XmaJI CCTAGG 2 cut(s) 119, 491
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 5 cut(s) 120, 348, 380, 486, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.