pycom08g20060

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0001187
Physical Location & Seq
Reverse (-)
19951141 .. 19952319
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g20060.1

Sequence Viewer

Length: 984 bp
ATGAGCTCCTCCAAATTATTGTTACTGCACTTTCTACAGATGCTTATTGTGGGTTTGGTGGTGCAATGCCAAGGCCAACTTACGCGCATTGGATTCTATTCGCGTACATGTCCCACGGCAGAGTCTATTGTCAAACAAACAGTTCAAACTCATTTCAACTCCAACCCTTCCGTTGCTCCTGGCTTGTTAAGGATGCACTTCCATGACTGCTTTGTCCAAGGTTGTGATGCTTCTGTCCTTCTTGACGGCCCCAACACTGAGAAAACCGCTGGACCTAACCGCGGTTTAAGAGGTTGGGAAGTCATTGACGATGCAAAGACCAAGCTCGAAGCGGCATGCCCCGGGGTTGTTTCTTGTGCAGATATTCTCGCTCTTGCTGCCCGTGATTCCGTGGTTCTGACCAAAGGATTCGCTTGGAATGTGCCTACGGGAAGAAGAGATGGACGAGTTTCGCTGGCAACCGAGACTACTAATCTGCCTGGCTTTAGAGATTCCATTGATGTACAAAAGGCCAAGTTCCAAGATTTGGGTCTCAACACTCAAGATCTTGTCACGCTAGTTGGCGCACACACCATTGGCACCTCAGCTTGCCAGTTCTTCAGGTACAGACTGTATAACTTCACCACCACTGGAAATGGCGCTGACGAAACAATCGACCCTTTATTCCTTGCTCAACTACGATCAATTTGCCCTGAAAATGGTGACGCGGCCAGGCGTGTTGATTTAGACACGGGCAGCGCAAGTCGATTCGATGCAACTTTCTTCACAAACTTGAAGAATGGTCGTGGGATACTGGAGTCGGATCAGAAGTTATGGACCGACGCCACCACTAAAAGTTTTGTCCAACGGTTTCTGGGCGTGAGAGGCTTACAAGCATTGAATTTCAACGTCGAGTTCGGAAAATCCATGGTGAAAATGAGTAACATCGGTGTAAAATCTGCCACAAATGGTGAAATCCGCCGCATTTGTTCTGCAGTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

328

Amino Acids

35.62

Weight (kDa)

8.73

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 284 2.1e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 578
AccB7I CCANNNNNTGG 1 cut(s) 526
AccII CGCG 4 cut(s) 85, 103, 282, 707
AciI CCGC 7 cut(s) 267, 280, 282, 332, 707, 958, 961
AclWI GGATC 1 cut(s) 810
AcoI YGGCCR 1 cut(s) 708
AcsI RAATTY 1 cut(s) 880
AcuI CTGAAG 1 cut(s) 583
AcyI GRCGYC 1 cut(s) 822
AfaI GTAC 3 cut(s) 106, 504, 605
AfiI CCNNNNNNNGG 3 cut(s) 281, 526, 698
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 5 cut(s) 146, 157, 775, 880, 886
AjnI CCWGG 3 cut(s) 178, 478, 710
AluBI AGCT 3 cut(s) 6, 325, 587
AluI AGCT 3 cut(s) 6, 325, 587
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 458, 536
AlwI GGATC 1 cut(s) 810
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 4 cut(s) 73, 247, 510, 708
ApeKI GCWGC 2 cut(s) 377, 735
ApoI RAATTY 1 cut(s) 880
AspLEI GCGC 4 cut(s) 87, 566, 641, 740
AspS9I GGNCC 3 cut(s) 248, 272, 816
AsuC2I CCSGG 2 cut(s) 342, 343
AsuHPI GGTGA 4 cut(s) 613, 713, 922, 962
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 2 cut(s) 272, 816
BaeI ACNNNNGTAYC 2 cut(s) 782, 815
BanI GGYRCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 583
BbvI GCAGC 2 cut(s) 364, 747
BccI CCATC 1 cut(s) 434
BceAI ACGGC 2 cut(s) 132, 262
BcgI CGANNNNNNTGC 2 cut(s) 669, 703
BciT130I CCWGG 3 cut(s) 180, 480, 712
BciVI GTATCC 1 cut(s) 783
BcnI CCSGG 2 cut(s) 342, 343
BcoDI GTCTC 2 cut(s) 458, 536
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 2 cut(s) 35, 972
BfoI RGCGCY 1 cut(s) 642
BfuI GTATCC 1 cut(s) 783
BglII AGATCT 1 cut(s) 544
BisI GCNGC 5 cut(s) 333, 378, 708, 736, 961
BlsI GCNGC 5 cut(s) 334, 379, 709, 737, 962
Bme1390I CCNGG 5 cut(s) 180, 342, 343, 480, 712
Bme18I GGWCC 2 cut(s) 272, 816
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 3 cut(s) 248, 272, 816
BmiI GGNNCC 2 cut(s) 250, 580
BmrFI CCNGG 5 cut(s) 180, 342, 343, 480, 712
BmsI GCATC 5 cut(s) 30, 183, 217, 301, 742
BpmI CTGGAG 1 cut(s) 815
Bpu10I CCTNAGC 1 cut(s) 583
BpuEI CTTGAG 1 cut(s) 525
BpuMI CCSGG 2 cut(s) 342, 343
BsaHI GRCGYC 1 cut(s) 822
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 9 cut(s) 70, 114, 217, 280, 340, 341, 342, 390, 906
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 526, 698
Bse1I ACTGG 3 cut(s) 592, 634, 798
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 3 cut(s) 180, 480, 712
BseDI CCNNGG 9 cut(s) 70, 114, 217, 280, 340, 341, 342, 390, 906
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 3 cut(s) 281, 526, 698
BseMI GCAATG 1 cut(s) 71
BseMII CTCAG 2 cut(s) 249, 597
BseNI ACTGG 3 cut(s) 592, 634, 798
BseXI GCAGC 2 cut(s) 364, 747
BsgI GTGCAG 2 cut(s) 11, 378
Bsh1236I CGCG 4 cut(s) 85, 103, 282, 707
BshFI GGCC 4 cut(s) 75, 249, 512, 710
BshNI GGYRCC 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 3 cut(s) 281, 526, 698
BsmAI GTCTC 2 cut(s) 458, 536
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 4 cut(s) 75, 249, 512, 710
Bso31I GGTCTC 1 cut(s) 536
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 3 cut(s) 544, 680, 802
Bsp19I CCATGG 1 cut(s) 906
BspACI CCGC 7 cut(s) 267, 280, 282, 332, 707, 958, 961
BspANI GGCC 4 cut(s) 75, 249, 512, 710
BspCNI CTCAG 2 cut(s) 250, 596
BspFNI CGCG 4 cut(s) 85, 103, 282, 707
BspLI GGNNCC 2 cut(s) 250, 580
BspMAI CTGCAG 1 cut(s) 976
BspPI GGATC 1 cut(s) 810
BspT107I GGYRCC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 3 cut(s) 592, 634, 798
BssECI CCNNGG 9 cut(s) 70, 114, 217, 280, 340, 341, 342, 390, 906
BssMI GATC 3 cut(s) 544, 680, 802
BssNI GRCGYC 1 cut(s) 822
BssT1I CCWWGG 3 cut(s) 70, 217, 906
Bst2UI CCWGG 3 cut(s) 180, 480, 712
Bst4CI ACNGT 3 cut(s) 142, 612, 849
Bst6I CTCTTC 1 cut(s) 430
BstACI GRCGYC 1 cut(s) 822
BstAUI TGTACA 1 cut(s) 502
BstC8I GCNNGC 3 cut(s) 337, 456, 589
BstDEI CTNAG 2 cut(s) 258, 583
BstDSI CCRYGG 4 cut(s) 114, 280, 390, 906
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 4 cut(s) 85, 103, 282, 707
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 4 cut(s) 87, 566, 641, 740
BstKTI GATC 3 cut(s) 547, 683, 805
BstMAI GTCTC 2 cut(s) 458, 536
BstMBI GATC 3 cut(s) 544, 680, 802
BstMWI GCNNNNNNNGC 2 cut(s) 377, 864
BstNI CCWGG 3 cut(s) 180, 480, 712
BstNSI RCATGY 2 cut(s) 111, 339
BstSCI CCNGG 5 cut(s) 178, 340, 341, 478, 710
BstSFI CTRYAG 2 cut(s) 35, 972
BstUI CGCG 4 cut(s) 85, 103, 282, 707
BstV1I GCAGC 2 cut(s) 364, 747
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuI GTATCC 1 cut(s) 783
BsuRI GGCC 4 cut(s) 75, 249, 512, 710
BtgI CCRYGG 4 cut(s) 114, 280, 390, 906
BtsCI GGATG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 255, 627
Cac8I GCNNGC 3 cut(s) 337, 456, 589
CfoI GCGC 4 cut(s) 87, 566, 641, 740
Cfr13I GGNCC 3 cut(s) 248, 272, 816
Cfr42I CCGCGG 1 cut(s) 283
Cfr9I CCCGGG 1 cut(s) 341
CseI GACGC 2 cut(s) 713, 830
Csp6I GTAC 3 cut(s) 105, 503, 604
CviAII CATG 4 cut(s) 108, 203, 336, 907
CviQI GTAC 3 cut(s) 105, 503, 604
DdeI CTNAG 2 cut(s) 258, 583
DpnI GATC 3 cut(s) 546, 682, 804
DpnII GATC 3 cut(s) 544, 680, 802
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 708
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
EciI GGCGGA 1 cut(s) 947
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 3 cut(s) 70, 217, 906
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 536
Eco47I GGWCC 2 cut(s) 272, 816
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 583
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 3 cut(s) 178, 478, 710
EcoT14I CCWWGG 3 cut(s) 70, 217, 906
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 3 cut(s) 70, 217, 906
FaeI CATG 4 cut(s) 111, 206, 339, 910
FaiI YATR 6 cut(s) 109, 204, 337, 615, 814, 908
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 1 cut(s) 96
FatI CATG 4 cut(s) 107, 202, 335, 906
Fnu4HI GCNGC 5 cut(s) 333, 378, 708, 736, 961
FokI GGATG 1 cut(s) 205
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 5 cut(s) 333, 378, 708, 736, 961
FspBI CTAG 1 cut(s) 557
GlaI GCGC 4 cut(s) 86, 565, 640, 739
GluI GCNGC 5 cut(s) 333, 378, 708, 736, 961
GsuI CTGGAG 1 cut(s) 815
HaeII RGCGCY 1 cut(s) 642
HaeIII GGCC 4 cut(s) 75, 249, 512, 710
HapII CCGG 1 cut(s) 342
HgaI GACGC 2 cut(s) 713, 830
HhaI GCGC 4 cut(s) 87, 566, 641, 740
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 4 cut(s) 111, 206, 339, 910
Hin6I GCGC 4 cut(s) 85, 564, 639, 738
HinP1I GCGC 4 cut(s) 85, 564, 639, 738
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HinfI GANTC 7 cut(s) 93, 122, 386, 408, 491, 747, 797
HpaII CCGG 1 cut(s) 342
HphI GGTGA 4 cut(s) 613, 713, 922, 962
Hpy166II GTNNAC 1 cut(s) 979
Hpy188I TCNGA 4 cut(s) 399, 802, 807, 899
Hpy188III TCNNGA 2 cut(s) 242, 542
Hpy8I GTNNAC 1 cut(s) 979
Hpy99I CGWCG 2 cut(s) 824, 893
HpyAV CCTTC 2 cut(s) 177, 248
HpyCH4III ACNGT 3 cut(s) 142, 612, 849
HpyCH4IV ACGT 1 cut(s) 888
HpyCH4V TGCA 7 cut(s) 28, 64, 196, 314, 359, 755, 974
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 864
HpyF3I CTNAG 2 cut(s) 258, 583
HpySE526I ACGT 1 cut(s) 888
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 4 cut(s) 111, 206, 339, 910
HspAI GCGC 4 cut(s) 85, 564, 639, 738
KspI CCGCGG 1 cut(s) 283
Kzo9I GATC 3 cut(s) 544, 680, 802
LmnI GCTCC 2 cut(s) 11, 181
Lsp1109I GCAGC 2 cut(s) 364, 747
LweI GCATC 5 cut(s) 30, 183, 217, 301, 742
MaeI CTAG 1 cut(s) 557
MaeII ACGT 1 cut(s) 888
MaeIII GTNAC 4 cut(s) 21, 550, 701, 920
MalI GATC 3 cut(s) 546, 682, 804
MboI GATC 3 cut(s) 544, 680, 802
MboII GAAGA 5 cut(s) 444, 447, 589, 754, 787
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 14, 684, 880
MlyI GAGTC 2 cut(s) 131, 806
MmeI TCCRAC 3 cut(s) 186, 780, 868
MnlI CCTC 4 cut(s) 19, 284, 592, 857
MseI TTAA 2 cut(s) 188, 287
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 2 cut(s) 269, 282
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 5 cut(s) 180, 342, 343, 480, 712
MvaI CCWGG 3 cut(s) 180, 480, 712
MvnI CGCG 4 cut(s) 85, 103, 282, 707
MwoI GCNNNNNNNGC 2 cut(s) 377, 864
NciI CCSGG 2 cut(s) 342, 343
NcoI CCATGG 1 cut(s) 906
NdeII GATC 3 cut(s) 544, 680, 802
NlaIII CATG 4 cut(s) 111, 206, 339, 910
NlaIV GGNNCC 2 cut(s) 250, 580
NmuCI GTSAC 2 cut(s) 550, 701
NspI RCATGY 2 cut(s) 111, 339
PaeI GCATGC 1 cut(s) 339
PciI ACATGT 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 651
PfeI GAWTC 5 cut(s) 93, 386, 408, 491, 747
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 5 cut(s) 334, 379, 709, 737, 962
PleI GAGTC 2 cut(s) 130, 805
PpsI GAGTC 2 cut(s) 130, 805
PscI ACATGT 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 3 cut(s) 178, 478, 710
PspGI CCWGG 3 cut(s) 178, 478, 710
PspN4I GGNNCC 2 cut(s) 250, 580
PspPI GGNCC 3 cut(s) 248, 272, 816
PstI CTGCAG 1 cut(s) 976
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 3 cut(s) 106, 504, 605
RsaNI GTAC 3 cut(s) 105, 503, 604
RseI CAYNNNNRTG 1 cut(s) 201
SacI GAGCTC 1 cut(s) 8
SacII CCGCGG 1 cut(s) 283
SaqAI TTAA 2 cut(s) 188, 287
SatI GCNGC 5 cut(s) 333, 378, 708, 736, 961
Sau3AI GATC 3 cut(s) 544, 680, 802
Sau96I GGNCC 3 cut(s) 248, 272, 816
SchI GAGTC 2 cut(s) 131, 806
ScrFI CCNGG 5 cut(s) 180, 342, 343, 480, 712
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 8, 223, 277, 295, 327, 584, 589, 605, 891
SfaNI GCATC 5 cut(s) 30, 183, 217, 301, 742
SfcI CTRYAG 2 cut(s) 35, 972
Sfr303I CCGCGG 1 cut(s) 283
SgrBI CCGCGG 1 cut(s) 283
SinI GGWCC 2 cut(s) 272, 816
SmaI CCCGGG 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
SphI GCATGC 1 cut(s) 339
Sse9I AATT 3 cut(s) 14, 684, 880
SsiI CCGC 7 cut(s) 267, 280, 282, 332, 707, 958, 961
SspMI CTAG 1 cut(s) 557
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 5 cut(s) 178, 340, 341, 478, 710
StyI CCWWGG 3 cut(s) 70, 217, 906
TaaI ACNGT 3 cut(s) 142, 612, 849
TaiI ACGT 1 cut(s) 891
TaqI TCGA 5 cut(s) 327, 654, 745, 750, 891
TaqII GACCGA 1 cut(s) 833
TasI AATT 3 cut(s) 14, 684, 880
TatI WGTACW 1 cut(s) 502
TauI GCSGC 3 cut(s) 335, 710, 963
TfiI GAWTC 5 cut(s) 93, 386, 408, 491, 747
Tru1I TTAA 2 cut(s) 188, 287
Tru9I TTAA 2 cut(s) 188, 287
TscAI CASTG 2 cut(s) 262, 634
TseFI GTSAC 2 cut(s) 550, 701
TseI GCWGC 2 cut(s) 377, 735
Tsp45I GTSAC 2 cut(s) 550, 701
TspGWI ACGGA 2 cut(s) 160, 379
TspMI CCCGGG 1 cut(s) 341
TspRI CASTG 2 cut(s) 262, 634
Van91I CCANNNNNTGG 1 cut(s) 526
VpaK11BI GGWCC 2 cut(s) 272, 816
XapI RAATTY 1 cut(s) 880
XceI RCATGY 2 cut(s) 111, 339
XmaI CCCGGG 1 cut(s) 341
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.