RchiOBHm_Chr7g0209291

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001187
Physical Location & Seq
Reverse (-)
26662301 .. 26663343
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18731

Sequence Viewer

Length: 792 bp
ATGCACTTTCATGACTGCTTTGTCCAAGGTTGTGACGCTTCTGTCCTCCTCGACGGTGCCAACACTGAAAAAACCGCTGGTCCAAACCGTGGATTGAGAGGTTGGGAAGTTATTGACGATGCAAAGACTCAGCTTGAAGCTGCATGCCCTGGTGTTGTTTCATGTGCAGACATTCTCGCTCTGGCTGCTCGCGATTCTGTCGTCTTGACCAAGGGAATTAATTGGAAGGTGCCTACCGGAAGGTTAGACGGACGAGTATCATTGGCATCCGAGACTAACAATCTGCCTGGCTTTAGGGATTCCATTGAAGTACAAAAGACGAAGTTCCAAGCATTTGGTCTCAACACTCAAGATCTTGTCACTCTTGTTGGTGGACATACTATTGGCACTTCAGCTTGCCAGTTCTTCAGGTACAGACTATATAACTTCACAACGACCGGAAATGGCGCAGACCCTACCATCAATCCTTCATTCGTTCCTCAACTACGAGCACTTTGCCCACAAGATGGTGATGCAGCCAAGCGTGTCGATTTGGACACAGGCAGCGCAGCTCGATTTGATGCAACGTTCTTCACAAATTTGAGGAATGGTCGAGGAATACTCGAGTCTGATCAAAAGTTATGGACTGATGCCTCCACAAAAAGCTTTGTCCAACGTTTCTTGGGTGTGAGAGGCTTGCAGGCATTGAACTTCAATGTAGAGTTCGGAAGGTCCATGGTGAAGATGAGTACAATCGGCCTAAAATCTGCAGATAAAGGAGAAATTCGCCGAATATGTTCTGCAATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

263

Amino Acids

28.53

Weight (kDa)

8.48

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 1 - 220 7.6e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 20, 41
AccB1I GGYRCC 2 cut(s) 56, 229
AccB7I CCANNNNNTGG 2 cut(s) 89, 506
AccII CGCG 1 cut(s) 192
AciI CCGC 1 cut(s) 75
AclI AACGTT 2 cut(s) 566, 655
AcsI RAATTY 2 cut(s) 577, 762
AcuI CTGAAG 2 cut(s) 375, 391
AfaI GTAC 3 cut(s) 312, 413, 730
AfiI CCNNNNNNNGG 2 cut(s) 89, 506
AgsI TTSAA 4 cut(s) 137, 308, 688, 694
AjnI CCWGG 2 cut(s) 148, 286
AluBI AGCT 5 cut(s) 133, 140, 395, 551, 645
AluI AGCT 5 cut(s) 133, 140, 395, 551, 645
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 2 cut(s) 266, 344
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 1 cut(s) 736
ApeKI GCWGC 5 cut(s) 140, 185, 515, 543, 548
ApoI RAATTY 2 cut(s) 577, 762
AseI ATTAAT 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 775
AspLEI GCGC 2 cut(s) 449, 548
AspS9I GGNCC 2 cut(s) 80, 711
AsuHPI GGTGA 2 cut(s) 521, 730
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 2 cut(s) 80, 711
BanI GGYRCC 2 cut(s) 56, 229
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 5 cut(s) 127, 172, 527, 555, 560
BccI CCATC 2 cut(s) 467, 500
BcgI CGANNNNNNTGC 2 cut(s) 477, 511
BciT130I CCWGG 2 cut(s) 150, 288
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 266, 344
BfmI CTRYAG 1 cut(s) 747
BglII AGATCT 1 cut(s) 352
BisI GCNGC 5 cut(s) 141, 186, 516, 544, 549
BlsI GCNGC 5 cut(s) 142, 187, 517, 545, 550
Bme1390I CCNGG 2 cut(s) 150, 288
Bme18I GGWCC 2 cut(s) 80, 711
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 2 cut(s) 80, 711
BmiI GGNNCC 2 cut(s) 58, 231
BmrFI CCNGG 2 cut(s) 150, 288
BmsI GCATC 5 cut(s) 109, 275, 502, 550, 619
BplI GAGNNNNNCTC 2 cut(s) 585, 617
BpuEI CTTGAG 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 5 cut(s) 25, 88, 148, 210, 714
BsaWI WCCGGW 2 cut(s) 236, 437
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 506
Bse1I ACTGG 1 cut(s) 400
BseBI CCWGG 2 cut(s) 150, 288
BseDI CCNNGG 5 cut(s) 25, 88, 148, 210, 714
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 2 cut(s) 89, 506
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 5 cut(s) 127, 172, 527, 555, 560
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 192
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 1 cut(s) 738
BshNI GGYRCC 2 cut(s) 56, 229
BsiEI CGRYCG 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 2 cut(s) 237, 438
BslI CCNNNNNNNGG 2 cut(s) 89, 506
BsmAI GTCTC 2 cut(s) 266, 344
BsnI GGCC 1 cut(s) 738
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 2 cut(s) 352, 610
Bsp19I CCATGG 1 cut(s) 714
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 738
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 58, 231
BspMAI CTGCAG 1 cut(s) 751
BspT107I GGYRCC 2 cut(s) 56, 229
BspTNI GGTCTC 1 cut(s) 344
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 5 cut(s) 25, 88, 148, 210, 714
BssMI GATC 2 cut(s) 352, 610
BssT1I CCWWGG 3 cut(s) 25, 210, 714
Bst2UI CCWGG 2 cut(s) 150, 288
Bst4CI ACNGT 2 cut(s) 56, 89
BstC8I GCNNGC 5 cut(s) 145, 190, 397, 677, 681
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 2 cut(s) 88, 714
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 2 cut(s) 449, 548
BstKTI GATC 2 cut(s) 355, 613
BstMAI GTCTC 2 cut(s) 266, 344
BstMBI GATC 2 cut(s) 352, 610
BstMCI CGRYCG 1 cut(s) 438
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 2 cut(s) 150, 288
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 148, 286
BstSFI CTRYAG 1 cut(s) 747
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 5 cut(s) 127, 172, 527, 555, 560
BstX2I RGATCY 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 335
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 1 cut(s) 738
BtgI CCRYGG 2 cut(s) 88, 714
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 63
BtuMI TCGCGA 1 cut(s) 192
Cac8I GCNNGC 5 cut(s) 145, 190, 397, 677, 681
CciI TCATGA 1 cut(s) 10
CfoI GCGC 2 cut(s) 449, 548
Cfr13I GGNCC 2 cut(s) 80, 711
CseI GACGC 1 cut(s) 44
Csp6I GTAC 3 cut(s) 311, 412, 729
CviAII CATG 4 cut(s) 11, 144, 162, 715
CviQI GTAC 3 cut(s) 311, 412, 729
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 354, 612
DpnII GATC 2 cut(s) 352, 610
DrdI GACNNNNNNGTC 2 cut(s) 20, 41
DseDI GACNNNNNNGTC 2 cut(s) 20, 41
Eco130I CCWWGG 3 cut(s) 25, 210, 714
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 2 cut(s) 80, 711
Eco57I CTGAAG 2 cut(s) 375, 391
Eco88I CYCGRG 1 cut(s) 602
EcoRII CCWGG 2 cut(s) 148, 286
EcoT14I CCWWGG 3 cut(s) 25, 210, 714
ErhI CCWWGG 3 cut(s) 25, 210, 714
FaeI CATG 4 cut(s) 14, 147, 165, 718
FaiI YATR 9 cut(s) 12, 145, 163, 378, 421, 423, 622, 716, 775
FatI CATG 4 cut(s) 10, 143, 161, 714
FbaI TGATCA 1 cut(s) 610
Fnu4HI GCNGC 5 cut(s) 141, 186, 516, 544, 549
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 5 cut(s) 141, 186, 516, 544, 549
GlaI GCGC 2 cut(s) 448, 547
GluI GCNGC 5 cut(s) 141, 186, 516, 544, 549
HaeIII GGCC 1 cut(s) 738
HapII CCGG 2 cut(s) 237, 438
HgaI GACGC 1 cut(s) 44
HhaI GCGC 2 cut(s) 449, 548
Hin1II CATG 4 cut(s) 14, 147, 165, 718
Hin6I GCGC 2 cut(s) 447, 546
HinP1I GCGC 2 cut(s) 447, 546
HindIII AAGCTT 1 cut(s) 643
HinfI GANTC 4 cut(s) 127, 194, 299, 605
HpaII CCGG 2 cut(s) 237, 438
HphI GGTGA 2 cut(s) 521, 730
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 3 cut(s) 271, 610, 707
Hpy188III TCNNGA 4 cut(s) 11, 191, 205, 350
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 4 cut(s) 220, 234, 477, 702
HpyCH4III ACNGT 2 cut(s) 56, 89
HpyCH4IV ACGT 2 cut(s) 566, 655
HpyCH4V TGCA 9 cut(s) 4, 122, 143, 167, 515, 563, 679, 749, 782
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 2 cut(s) 566, 655
Hsp92II CATG 4 cut(s) 14, 147, 165, 718
HspAI GCGC 2 cut(s) 447, 546
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 2 cut(s) 352, 610
Lsp1109I GCAGC 5 cut(s) 127, 172, 527, 555, 560
LweI GCATC 5 cut(s) 109, 275, 502, 550, 619
MaeII ACGT 2 cut(s) 566, 655
MaeIII GTNAC 2 cut(s) 32, 358
MalI GATC 2 cut(s) 354, 612
MboI GATC 2 cut(s) 352, 610
MboII GAAGA 3 cut(s) 397, 562, 733
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 5 cut(s) 216, 220, 577, 762, 783
MlyI GAGTC 2 cut(s) 121, 614
MmeI TCCRAC 1 cut(s) 676
MnlI CCTC 8 cut(s) 56, 59, 92, 489, 576, 587, 643, 665
MroXI GAANNNNTTC 1 cut(s) 775
MseI TTAA 2 cut(s) 219, 786
MslI CAYNNNNRTG 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 237, 438
MspR9I CCNGG 2 cut(s) 150, 288
MvaI CCWGG 2 cut(s) 150, 288
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 185
NcoI CCATGG 1 cut(s) 714
NdeII GATC 2 cut(s) 352, 610
NlaIII CATG 4 cut(s) 14, 147, 165, 718
NlaIV GGNNCC 2 cut(s) 58, 231
NmuCI GTSAC 2 cut(s) 32, 358
NruI TCGCGA 1 cut(s) 192
NspI RCATGY 1 cut(s) 147
PaeI GCATGC 1 cut(s) 147
PaeR7I CTCGAG 1 cut(s) 602
PagI TCATGA 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 775
PfeI GAWTC 2 cut(s) 194, 299
PflMI CCANNNNNTGG 2 cut(s) 89, 506
PkrI GCNGC 5 cut(s) 142, 187, 517, 545, 550
PleI GAGTC 2 cut(s) 121, 613
PpsI GAGTC 2 cut(s) 121, 613
PshBI ATTAAT 1 cut(s) 219
Psp1406I AACGTT 2 cut(s) 566, 655
Psp6I CCWGG 2 cut(s) 148, 286
PspGI CCWGG 2 cut(s) 148, 286
PspN4I GGNNCC 2 cut(s) 58, 231
PspPI GGNCC 2 cut(s) 80, 711
PspXI VCTCGAGB 1 cut(s) 602
PstI CTGCAG 1 cut(s) 751
PsuI RGATCY 1 cut(s) 352
RruI TCGCGA 1 cut(s) 192
RsaI GTAC 3 cut(s) 312, 413, 730
RsaNI GTAC 3 cut(s) 311, 412, 729
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 2 cut(s) 219, 786
SatI GCNGC 5 cut(s) 141, 186, 516, 544, 549
Sau3AI GATC 2 cut(s) 352, 610
Sau96I GGNCC 2 cut(s) 80, 711
SchI GAGTC 2 cut(s) 121, 614
ScrFI CCNGG 2 cut(s) 150, 288
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 5 cut(s) 109, 275, 502, 550, 619
SfcI CTRYAG 1 cut(s) 747
Sfr274I CTCGAG 1 cut(s) 602
SinI GGWCC 2 cut(s) 80, 711
SlaI CTCGAG 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 2 cut(s) 348, 602
SmoI CTYRAG 2 cut(s) 348, 602
SphI GCATGC 1 cut(s) 147
Sse9I AATT 5 cut(s) 216, 220, 577, 762, 783
SsiI CCGC 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 148, 286
StyI CCWWGG 3 cut(s) 25, 210, 714
TaaI ACNGT 2 cut(s) 56, 89
TaiI ACGT 2 cut(s) 569, 658
TaqI TCGA 5 cut(s) 51, 528, 553, 592, 603
TasI AATT 5 cut(s) 216, 220, 577, 762, 783
TatI WGTACW 2 cut(s) 310, 728
TfiI GAWTC 2 cut(s) 194, 299
Tru1I TTAA 2 cut(s) 219, 786
Tru9I TTAA 2 cut(s) 219, 786
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 2 cut(s) 32, 358
TseI GCWGC 5 cut(s) 140, 185, 515, 543, 548
Tsp45I GTSAC 2 cut(s) 32, 358
TspDTI ATGAA 2 cut(s) 150, 459
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 1 cut(s) 70
Van91I CCANNNNNTGG 2 cut(s) 89, 506
VpaK11BI GGWCC 2 cut(s) 80, 711
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 2 cut(s) 577, 762
XceI RCATGY 1 cut(s) 147
XhoI CTCGAG 1 cut(s) 602
XmnI GAANNNNTTC 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.