Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001187

Physical Location & Seq

Genomic Coordinates Forward (+)

18079651 .. 18080195

Gene Structure 545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1088400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGACGAGTTTCGCTGGCCACCGAGACTAGCCAAGTTCCAAGATTTGGGTCTCAACACTCAAGATCTTGTCACGCTCGTTGGTGCACACACCATTGGCACTTCAGCTTGCCAGTTCTTCAGGTACAGGCTGTATAACTTCAACACAAGCACAAATGGCGCTGACGAAACCATCAACCCTAAATTCCTTGCTCAACTGCGATCAATTTGCCCTGAAAATGATGACGTGGCCAGGCGTGTTGATTTAGACACGGGCAGCGCAAATAGATTCGATGCAACTTTCTTTACAAATTTGAAGAATGGTCGCGGAATACTTGAGTCGGATCAGAAGTTGTGGACAGATGCCACCACTAAAAGTTTTGTCCAACGATTTTTGGGCGTGAGAGGCTTACAAGCATTGAATTTCAACATCGAGTTCGGAAAGTCGATGGTGAAAATGAGTAACATCGGTGTAAAATCTGCCGCAAATGGTGAAATCCGCCGCATTTGTTCTGCAGTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

168

Amino Acids

18.74

Weight (kDa)

9.15

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	10 - 124	3.9e-31	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39580 AT5G39580 AT5G64120
fragaria_vesca	FvH4_5g21780 FvH4_5g21800 FvH4_5g24010
malus_domestica	MD00G1088300.v1.1 MD00G1088400.v1.1 MD03G1084400.v1.1 MD08G1230700.v1.1 MD08G1230800.v1.1 MD08G1230900.v1.1 MD08G1231000.v1.1 MD08G1231100.v1.1
pyrus_communis	pycom03g06660 pycom08g20060 pycom08g20070 pycom08g20080 pycom08g20090
rosa_chinensis	RchiOBHm_Chr7g0209261 RchiOBHm_Chr7g0209281 RchiOBHm_Chr7g0209291 RchiOBHm_Chr7g0209311 RchiOBHm_Chr7g0209321
rosa_laevigata	RLG00000003144 RLG00000003145 RLG00000003147 RLG00000003148 RLG00000003150
rosa_multiflora	Rmu_co8212558.1_g000001 Rmu_sc0001701.1_g000016 Rmu_sc0001701.1_g000017 Rmu_sc0037970.1_g000001 Rmu_sc0037970.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249520 Rroxscaffold_3G00249530 Rroxscaffold_3G00249550 Rroxscaffold_3G00249560 Rroxscaffold_3G00249580
rosa_rugosa	Rorug07G0111000 Rorug07G0111100 Rorug07G0111300 Rorug07G0111400
rosa_samantha	Rh7AG245300 Rh7AG245400 Rh7BG240100 Rh7BG240200 Rh7BG240400 Rh7BG240500 Rh7CG260400 Rh7CG260600 Rh7CG260700 Rh7CG260800 Rh7DG251700 Rh7DG251800
rosa_wichuraiana	Rw7G020770 Rw7G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccII	CGCG	1 cut(s)	306
AciI	CCGC	4 cut(s)	306, 462, 478, 481
AclWI	GGATC	1 cut(s)	330
AcoI	YGGCCR	2 cut(s)	17, 228
AcsI	RAATTY	3 cut(s)	182, 289, 400
AcuI	CTGAAG	2 cut(s)	87, 103
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	4 cut(s)	142, 295, 400, 406
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	2 cut(s)	19, 56
Alw44I	GTGCAC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	330
AoxI	GGCC	2 cut(s)	17, 228
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	3 cut(s)	182, 289, 400
AspLEI	GCGC	2 cut(s)	161, 260
AsuHPI	GGTGA	2 cut(s)	442, 482
BaeGI	GKGCMC	1 cut(s)	88
BalI	TGGCCA	2 cut(s)	19, 230
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	2 cut(s)	179, 421
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	19, 56
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	162
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	3 cut(s)	256, 462, 481
BlsI	GCNGC	3 cut(s)	257, 463, 482
Bme1390I	CCNGG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	262, 331
BpuEI	CTTGAG	2 cut(s)	45, 335
BsaI	GGTCTC	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	19, 230
BsiHKAI	GWGCWC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	2 cut(s)	19, 56
BsnI	GGCC	2 cut(s)	19, 230
Bso31I	GGTCTC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	3 cut(s)	64, 200, 322
BspACI	CCGC	4 cut(s)	306, 462, 478, 481
BspANI	GGCC	2 cut(s)	19, 230
BspFNI	CGCG	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	112
BssMI	GATC	3 cut(s)	64, 200, 322
Bst2UI	CCWGG	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	17, 109
BstFNI	CGCG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	161, 260
BstKTI	GATC	3 cut(s)	67, 203, 325
BstMAI	GTCTC	2 cut(s)	19, 56
BstMBI	GATC	3 cut(s)	64, 200, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 384
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	88
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	19, 230
BtrI	CACGTC	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	17, 109
CfoI	GCGC	2 cut(s)	161, 260
Csp6I	GTAC	1 cut(s)	124
CviJI	RGCY	6 cut(s)	19, 32, 107, 130, 230, 387
CviKI_1	RGCY	6 cut(s)	19, 32, 107, 130, 230, 387
CviQI	GTAC	1 cut(s)	124
DpnI	GATC	3 cut(s)	66, 202, 324
DpnII	GATC	3 cut(s)	64, 200, 322
EaeI	YGGCCR	2 cut(s)	17, 228
EciI	GGCGGA	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	56
Eco57I	CTGAAG	2 cut(s)	87, 103
EcoRII	CCWGG	1 cut(s)	230
FaiI	YATR	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	256, 462, 481
Fsp4HI	GCNGC	3 cut(s)	256, 462, 481
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	2 cut(s)	160, 259
GluI	GCNGC	3 cut(s)	256, 462, 481
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	19, 230
HhaI	GCGC	2 cut(s)	161, 260
Hin6I	GCGC	2 cut(s)	159, 258
HinP1I	GCGC	2 cut(s)	159, 258
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	2 cut(s)	267, 317
HphI	GGTGA	2 cut(s)	442, 482
Hpy166II	GTNNAC	3 cut(s)	86, 336, 499
Hpy188I	TCNGA	3 cut(s)	322, 327, 419
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	3 cut(s)	86, 336, 499
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	86, 275, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 384
HpySE526I	ACGT	1 cut(s)	225
HspAI	GCGC	2 cut(s)	159, 258
Kzo9I	GATC	3 cut(s)	64, 200, 322
LpnPI	CCDG	6 cut(s)	106, 112, 125, 217, 225, 244
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	2 cut(s)	262, 331
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	70, 440
MalI	GATC	3 cut(s)	66, 202, 324
MboI	GATC	3 cut(s)	64, 200, 322
MboII	GAAGA	2 cut(s)	109, 307
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	88
MlsI	TGGCCA	2 cut(s)	19, 230
MluCI	AATT	4 cut(s)	182, 204, 289, 400
MluNI	TGGCCA	2 cut(s)	19, 230
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	300, 388
MnlI	CCTC	1 cut(s)	377
Mox20I	TGGCCA	2 cut(s)	19, 230
MscI	TGGCCA	2 cut(s)	19, 230
Msp20I	TGGCCA	2 cut(s)	19, 230
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	156, 384
NdeII	GATC	3 cut(s)	64, 200, 322
NmuCI	GTSAC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	3 cut(s)	257, 463, 482
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SatI	GCNGC	3 cut(s)	256, 462, 481
Sau3AI	GATC	3 cut(s)	64, 200, 322
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	3 cut(s)	109, 125, 228
SfaNI	GCATC	2 cut(s)	262, 331
SfcI	CTRYAG	1 cut(s)	492
SmlI	CTYRAG	2 cut(s)	60, 314
SmoI	CTYRAG	2 cut(s)	60, 314
Sse9I	AATT	4 cut(s)	182, 204, 289, 400
SsiI	CCGC	4 cut(s)	306, 462, 478, 481
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	230
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	3 cut(s)	270, 411, 425
TasI	AATT	4 cut(s)	182, 204, 289, 400
TauI	GCSGC	2 cut(s)	464, 483
TfiI	GAWTC	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	46
VneI	GTGCAC	1 cut(s)	84
XapI	RAATTY	3 cut(s)	182, 289, 400
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.