Rh7AG245400

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001187
Physical Location & Seq
Reverse (-)
24171805 .. 24172526
722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG245400.1

Sequence Viewer

Length: 627 bp
ATGCTGAAGATTGAATTCGTTTCTATTTTATTGCAGACCAAGGGAATCGATTGGAAGGTGCCTACTGGAAGATTAGACGGACGTATTTCATTGGCATCGGAGACTTCAGCTTTGCCTGGCTTTAGAGACTCCATGAAAGTACAAAAGGACAAGTTCAAAAATTTGGGTCTCAACACTCAAGATCTTGTCACTCTTGTTGGTGGACACACCATTGGCACTACCGCTTGCCAGTTATTCAGCTACAGACTCTATGACTTCAACACAACTGGAAATGGTGATGCTACAGACCCTACCATCAGTCCTTCATTCCTTTCTCAATTAAAATCACTTTGCCCAGAAAATGGCGATGGAGCCAAGCGTGTTGATTTAGACACAGGCAGAGAAAACCGATTTGATGCGACATTCTTTACAAACTTGAAGAATGGGCGTGGTGTACTCGAGTCCGATCAAATGTTATGGACTGATGCCTCCACAAGAAGCTTTGTCCAACGTTTCTTGGGAGTCAGAGGCTTGCGAGCATTGAATTTTAATGCAGAGTTTGGAAGGTCTATGGTGAAGATGAGTAAAATTGGTTTGAAACCTGCGGCAAAGGGTGAAATTCGCCGCATTTGTCCTGCAGTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

208

Amino Acids

22.95

Weight (kDa)

9.6

Isoelectric Point (pI)

29.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 13 - 165 1.8e-39 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 589
AccB1I GGYRCC 1 cut(s) 58
AccB7I CCANNNNNTGG 1 cut(s) 341
AciI CCGC 3 cut(s) 222, 584, 604
AclI AACGTT 1 cut(s) 490
AcsI RAATTY 4 cut(s) 14, 160, 523, 597
AcuI CTGAAG 2 cut(s) 26, 90
AfaI GTAC 2 cut(s) 141, 435
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 6 cut(s) 14, 157, 259, 418, 523, 577
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 110, 240, 480
AluI AGCT 3 cut(s) 110, 240, 480
Alw26I GTCTC 3 cut(s) 95, 120, 173
Ama87I CYCGRG 1 cut(s) 437
ApoI RAATTY 4 cut(s) 14, 160, 523, 597
ArsI GACNNNNNNTTYG 2 cut(s) 94, 126
AsuHPI GGTGA 3 cut(s) 287, 565, 605
AvaI CYCGRG 1 cut(s) 437
BanI GGYRCC 1 cut(s) 58
BccI CCATC 2 cut(s) 302, 341
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 3 cut(s) 95, 120, 173
BfmI CTRYAG 3 cut(s) 241, 282, 615
BfuAI ACCTGC 1 cut(s) 589
BglII AGATCT 1 cut(s) 181
BisI GCNGC 2 cut(s) 585, 604
BlsI GCNGC 2 cut(s) 586, 605
Bme1390I CCNGG 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 60, 352
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 4 cut(s) 104, 268, 385, 454
BpuEI CTTGAG 1 cut(s) 162
Bsa29I ATCGAT 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 3 cut(s) 70, 229, 271
BseBI CCWGG 1 cut(s) 117
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 341
BseNI ACTGG 3 cut(s) 70, 229, 271
BshNI GGYRCC 1 cut(s) 58
BshVI ATCGAT 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 3 cut(s) 95, 120, 173
Bso31I GGTCTC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 437
Bsp143I GATC 2 cut(s) 181, 445
BspACI CCGC 3 cut(s) 222, 584, 604
BspDI ATCGAT 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 60, 352
BspMAI CTGCAG 1 cut(s) 619
BspMI ACCTGC 1 cut(s) 589
BspT107I GGYRCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 173
BsrI ACTGG 3 cut(s) 70, 229, 271
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 2 cut(s) 181, 445
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 226, 512, 516
BstKTI GATC 2 cut(s) 184, 448
BstMAI GTCTC 3 cut(s) 95, 120, 173
BstMBI GATC 2 cut(s) 181, 445
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 3 cut(s) 241, 282, 615
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 48
BsuTUI ATCGAT 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 360
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 3 cut(s) 226, 512, 516
ClaI ATCGAT 1 cut(s) 48
Csp6I GTAC 2 cut(s) 140, 434
CviAII CATG 1 cut(s) 133
CviJI RGCY 6 cut(s) 110, 120, 240, 353, 480, 510
CviKI_1 RGCY 6 cut(s) 110, 120, 240, 353, 480, 510
CviQI GTAC 2 cut(s) 140, 434
DpnI GATC 2 cut(s) 183, 447
DpnII GATC 2 cut(s) 181, 445
Eco130I CCWWGG 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 173
Eco57I CTGAAG 2 cut(s) 26, 90
Eco88I CYCGRG 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 136
FaiI YATR 4 cut(s) 134, 252, 457, 551
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 585, 604
Fsp4HI GCNGC 2 cut(s) 585, 604
GluI GCNGC 2 cut(s) 585, 604
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 5 cut(s) 45, 128, 246, 440, 501
HpaI GTTAAC 1 cut(s) 622
HphI GGTGA 3 cut(s) 287, 565, 605
Hpy166II GTNNAC 3 cut(s) 203, 434, 622
Hpy188I TCNGA 3 cut(s) 100, 445, 506
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 3 cut(s) 203, 434, 622
HpyAV CCTTC 3 cut(s) 49, 312, 537
HpyCH4IV ACGT 2 cut(s) 82, 490
HpyCH4V TGCA 3 cut(s) 34, 533, 617
HpySE526I ACGT 2 cut(s) 82, 490
Hsp92II CATG 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 622
Kzo9I GATC 2 cut(s) 181, 445
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 8 cut(s) 51, 102, 129, 242, 252, 348, 360, 594
LweI GCATC 4 cut(s) 104, 268, 385, 454
MaeII ACGT 2 cut(s) 82, 490
MaeIII GTNAC 1 cut(s) 187
MalI GATC 2 cut(s) 183, 447
MboI GATC 2 cut(s) 181, 445
MboII GAAGA 4 cut(s) 19, 81, 430, 568
MflI RGATCY 1 cut(s) 181
MluCI AATT 6 cut(s) 14, 160, 317, 523, 567, 597
MlyI GAGTC 4 cut(s) 122, 240, 449, 510
MmeI TCCRAC 1 cut(s) 511
MnlI CCTC 2 cut(s) 478, 500
MseI TTAA 3 cut(s) 320, 528, 621
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
NdeII GATC 2 cut(s) 181, 445
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 60, 352
NmuCI GTSAC 1 cut(s) 187
PaeR7I CTCGAG 1 cut(s) 437
PfeI GAWTC 1 cut(s) 45
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 2 cut(s) 586, 605
PleI GAGTC 4 cut(s) 122, 240, 448, 509
PpsI GAGTC 4 cut(s) 122, 240, 448, 509
Psp1406I AACGTT 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 60, 352
PspXI VCTCGAGB 1 cut(s) 437
PstI CTGCAG 1 cut(s) 619
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 141, 435
RsaNI GTAC 2 cut(s) 140, 434
SaqAI TTAA 3 cut(s) 320, 528, 621
SatI GCNGC 2 cut(s) 585, 604
Sau3AI GATC 2 cut(s) 181, 445
SchI GAGTC 4 cut(s) 122, 240, 449, 510
ScrFI CCNGG 1 cut(s) 117
SetI ASST 8 cut(s) 60, 85, 112, 242, 482, 493, 548, 583
SfaNI GCATC 4 cut(s) 104, 268, 385, 454
SfcI CTRYAG 3 cut(s) 241, 282, 615
Sfr274I CTCGAG 1 cut(s) 437
SlaI CTCGAG 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 177, 437
SmoI CTYRAG 2 cut(s) 177, 437
Sse9I AATT 6 cut(s) 14, 160, 317, 523, 567, 597
SsiI CCGC 3 cut(s) 222, 584, 604
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 39
TaiI ACGT 2 cut(s) 85, 493
TaqI TCGA 2 cut(s) 48, 438
TasI AATT 6 cut(s) 14, 160, 317, 523, 567, 597
TatI WGTACW 2 cut(s) 139, 433
TauI GCSGC 2 cut(s) 587, 606
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 3 cut(s) 320, 528, 621
Tru9I TTAA 3 cut(s) 320, 528, 621
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 78, 149, 294
TspGWI ACGGA 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 341
XapI RAATTY 4 cut(s) 14, 160, 523, 597
XhoI CTCGAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.