Rh7CG260800

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001187
Physical Location & Seq
Reverse (-)
25460252 .. 25470623
10372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG260800.1

Sequence Viewer

Length: 621 bp
ATGGTGGAGCGCGTGGGCACATTATTCGATACCAAGGGAATCGATTGGAAGGTGCCTACTGGAAGATTAGACGGACGTATTTCATTGGCATCGGAGACTTCAGCTTTGCCTGGCTTTAGAGACTCCATGAAAGTACAAAAGGACAAGTTCAAAAATTTGGGTCTCAACACTCAAGATCTTGTCACTCTTGTTGGTGGACACACCATTGGCACTACCGCTTGCCAGTTATTCAGCTACAGACTCTATGACTTCAACACAACTGGAAATGGTGATGCTACAGACCCTACCATCAGTCCTTCATTCCTTTCTCAATTAAAATCACTTTGCCCAGAAAATGGCGATGGAGCCAAGCGTGTTGATTTAGACACAGGCAGAGAAAACCGATTTGATGCGACATTCTTTACAAACTTGAAGAATGGGCGTGGTGTACTCGAGTCCGATCAAATGTTATGGACTGATGCCTCCACAAGAAGCTTTGTCCAACGTTTCTTGGGAGTCAGAGGCTTGCGAGCATTGAATTTTAATGCAGAGTTTGGAAGGTCTATGGTGAAGATGAGTAAAATTGGTTTGAAACCTGCGGCAAAGGGTGAAATTCGCCGCATTTGTCCTGCAGTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

206

Amino Acids

22.68

Weight (kDa)

9.51

Isoelectric Point (pI)

24.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 11 - 163 2.4e-39 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AccB1I GGYRCC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 335
AccII CGCG 1 cut(s) 12
AciI CCGC 3 cut(s) 216, 578, 598
AclI AACGTT 1 cut(s) 484
AcsI RAATTY 3 cut(s) 154, 517, 591
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 2 cut(s) 135, 429
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 5 cut(s) 151, 253, 412, 517, 571
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 3 cut(s) 104, 234, 474
AluI AGCT 3 cut(s) 104, 234, 474
Alw26I GTCTC 3 cut(s) 89, 114, 167
Ama87I CYCGRG 1 cut(s) 431
ApoI RAATTY 3 cut(s) 154, 517, 591
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AspLEI GCGC 1 cut(s) 12
AsuHPI GGTGA 3 cut(s) 281, 559, 599
AvaI CYCGRG 1 cut(s) 431
BaeGI GKGCMC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 52
BccI CCATC 2 cut(s) 296, 335
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 89, 114, 167
BfmI CTRYAG 3 cut(s) 235, 276, 609
BfuAI ACCTGC 1 cut(s) 583
BglII AGATCT 1 cut(s) 175
BisI GCNGC 2 cut(s) 579, 598
BlsI GCNGC 2 cut(s) 580, 599
Bme1390I CCNGG 1 cut(s) 111
BmeT110I CYCGRG 1 cut(s) 431
BmiI GGNNCC 2 cut(s) 54, 346
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 4 cut(s) 98, 262, 379, 448
BpuEI CTTGAG 1 cut(s) 156
Bsa29I ATCGAT 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 3 cut(s) 64, 223, 265
BseBI CCWGG 1 cut(s) 111
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 335
BseNI ACTGG 3 cut(s) 64, 223, 265
BseSI GKGCMC 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 52
BshVI ATCGAT 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 3 cut(s) 89, 114, 167
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 175, 439
BspACI CCGC 3 cut(s) 216, 578, 598
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 54, 346
BspMAI CTGCAG 1 cut(s) 613
BspMI ACCTGC 1 cut(s) 583
BspT107I GGYRCC 1 cut(s) 52
BspTNI GGTCTC 1 cut(s) 167
BsrI ACTGG 3 cut(s) 64, 223, 265
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 175, 439
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 220, 506, 510
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 2 cut(s) 178, 442
BstMAI GTCTC 3 cut(s) 89, 114, 167
BstMBI GATC 2 cut(s) 175, 439
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstSFI CTRYAG 3 cut(s) 235, 276, 609
BstSLI GKGCMC 1 cut(s) 20
BstUI CGCG 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
Bsu15I ATCGAT 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 354
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 3 cut(s) 220, 506, 510
CfoI GCGC 1 cut(s) 12
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 2 cut(s) 134, 428
CviAII CATG 1 cut(s) 127
CviJI RGCY 6 cut(s) 104, 114, 234, 347, 474, 504
CviKI_1 RGCY 6 cut(s) 104, 114, 234, 347, 474, 504
CviQI GTAC 2 cut(s) 134, 428
DpnI GATC 2 cut(s) 177, 441
DpnII GATC 2 cut(s) 175, 439
Eco130I CCWWGG 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 130
FaiI YATR 4 cut(s) 128, 246, 451, 545
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 579, 598
Fsp4HI GCNGC 2 cut(s) 579, 598
GlaI GCGC 1 cut(s) 11
GluI GCNGC 2 cut(s) 579, 598
HhaI GCGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 5 cut(s) 39, 122, 240, 434, 495
HpaI GTTAAC 1 cut(s) 616
HphI GGTGA 3 cut(s) 281, 559, 599
Hpy166II GTNNAC 3 cut(s) 197, 428, 616
Hpy188I TCNGA 3 cut(s) 94, 439, 500
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 3 cut(s) 197, 428, 616
HpyAV CCTTC 3 cut(s) 43, 306, 531
HpyCH4IV ACGT 2 cut(s) 76, 484
HpyCH4V TGCA 2 cut(s) 527, 611
HpySE526I ACGT 2 cut(s) 76, 484
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 10
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 2 cut(s) 175, 439
LmnI GCTCC 2 cut(s) 7, 344
LpnPI CCDG 8 cut(s) 45, 96, 123, 236, 246, 342, 354, 588
LweI GCATC 4 cut(s) 98, 262, 379, 448
MaeII ACGT 2 cut(s) 76, 484
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 177, 441
MboI GATC 2 cut(s) 175, 439
MboII GAAGA 3 cut(s) 75, 424, 562
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 5 cut(s) 154, 311, 517, 561, 591
MlyI GAGTC 4 cut(s) 116, 234, 443, 504
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 2 cut(s) 472, 494
MseI TTAA 3 cut(s) 314, 522, 615
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 12
NdeII GATC 2 cut(s) 175, 439
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 2 cut(s) 54, 346
NmuCI GTSAC 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 431
PfeI GAWTC 1 cut(s) 39
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 2 cut(s) 580, 599
PleI GAGTC 4 cut(s) 116, 234, 442, 503
PpsI GAGTC 4 cut(s) 116, 234, 442, 503
Psp1406I AACGTT 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 54, 346
PspXI VCTCGAGB 1 cut(s) 431
PstI CTGCAG 1 cut(s) 613
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 2 cut(s) 135, 429
RsaNI GTAC 2 cut(s) 134, 428
SaqAI TTAA 3 cut(s) 314, 522, 615
SatI GCNGC 2 cut(s) 579, 598
Sau3AI GATC 2 cut(s) 175, 439
SchI GAGTC 4 cut(s) 116, 234, 443, 504
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 20
SetI ASST 8 cut(s) 54, 79, 106, 236, 476, 487, 542, 577
SfaNI GCATC 4 cut(s) 98, 262, 379, 448
SfcI CTRYAG 3 cut(s) 235, 276, 609
Sfr274I CTCGAG 1 cut(s) 431
SlaI CTCGAG 1 cut(s) 431
SmlI CTYRAG 2 cut(s) 171, 431
SmoI CTYRAG 2 cut(s) 171, 431
Sse9I AATT 5 cut(s) 154, 311, 517, 561, 591
SsiI CCGC 3 cut(s) 216, 578, 598
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 1 cut(s) 33
TaiI ACGT 2 cut(s) 79, 487
TaqI TCGA 3 cut(s) 27, 42, 432
TasI AATT 5 cut(s) 154, 311, 517, 561, 591
TatI WGTACW 2 cut(s) 133, 427
TauI GCSGC 2 cut(s) 581, 600
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 3 cut(s) 314, 522, 615
Tru9I TTAA 3 cut(s) 314, 522, 615
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 72, 143, 288
TspGWI ACGGA 1 cut(s) 87
Van91I CCANNNNNTGG 1 cut(s) 335
XapI RAATTY 3 cut(s) 154, 517, 591
XhoI CTCGAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.