Rroxscaffold_3G00249580

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001187
Physical Location & Seq
Forward (+)
43353076 .. 43354303
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249580.1

Sequence Viewer

Length: 990 bp
ATGTACCAGAAGTCCTCCATTTTCGTTGTGTTTCTGACCTTGCTTGCCTTGGCTACCACCTTCCCCAACTCGGTACAAAGCCAAAGCACACGAGTTGGATTCTATTCCAGTTCATGTCCTAGGGCAGAGTCCATTGTTACAGAAACAGTTCAGAAGCATTTCAAATCCTCTCCTTCCATTGCTGCTGGCTTATTGAGGATGTATTTTCATGACTGCTTTGTCCAAGGTTGTGACGCATCTGTCCTCCTCAACGGCGAAAACACTGAAAAAACTGCTGTCCCAAACCTCGGATTGAGAGGTTGGGAAGTTATTGACGATGCAAAGACTCAACTTGAAGCTGCATGCCCTGGTGTTGTTTCCTGTGCTGATATTCTCGCCCTAGCTGCTCGCGATTCTGTCGTCTTGACAAAGGGAATTAACTGGGACGTGCCTACCGGAAGGTTAGACGGACGAGTATCATTGGCATCTGAGGCTAAAAATCTGCCTGGCCCTAGGGATTCTATTGATGTACAAAAGACCAAGTTTCAAACTTTTGGTCTCAACACTCAAGATCTTGTCACGCTTGTTGGTGGACACACTATTGGCACTTCAGCTTGCCAGTTCTTCAGGTACAGGCTTTACAACTTCACTACAACTGGAAACGGCGCAGATCCTACCATCAACCCTTCATTTCTTCCTCAACTACGAACACTTTGCCCCCAAGATGGTGATGCAGCAAAGCGTGTCGATTTGGACATAGGCAGCGCAGCTTTATTTGATGCAACATTCTTCAAAAACTTAGAGAATGGTCGCGGGATACTCGAGTCTGATCAAAAATTATGGACTGATGCCTCCACAAAAAGCTTTGTCCAACAGTTCTTGGGTGTGAGAGGCTTGCAGGCATTGAATTTCAACATAGAGTTCGGAAGGTCCATGGTGAAGATGAGTAATATCGGTTTGAAGTCTGCAGCAAATGGTGAAATCCGCCGCATTTGTTCTGCCATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

329

Amino Acids

35.7

Weight (kDa)

8.08

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 286 5.9e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 218, 239
AccII CGCG 2 cut(s) 390, 792
AciI CCGC 3 cut(s) 792, 964, 967
AclWI GGATC 1 cut(s) 644
AcsI RAATTY 1 cut(s) 886
AcuI CTGAAG 2 cut(s) 573, 589
AfaI GTAC 4 cut(s) 5, 75, 510, 611
AfiI CCNNNNNNNGG 3 cut(s) 70, 287, 704
AgsI TTSAA 7 cut(s) 163, 335, 527, 772, 886, 892, 940
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 2 cut(s) 346, 484
AluBI AGCT 5 cut(s) 338, 383, 593, 749, 843
AluI AGCT 5 cut(s) 338, 383, 593, 749, 843
Alw26I GTCTC 1 cut(s) 542
AlwI GGATC 1 cut(s) 644
Ama87I CYCGRG 1 cut(s) 800
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 7 cut(s) 182, 338, 383, 713, 741, 746, 947
ApoI RAATTY 1 cut(s) 886
ArsI GACNNNNNNTTYG 2 cut(s) 520, 552
Asp700I GAANNNNTTC 2 cut(s) 147, 158
AspA2I CCTAGG 2 cut(s) 119, 491
AspLEI GCGC 2 cut(s) 647, 746
AspS9I GGNCC 2 cut(s) 488, 909
AsuHPI GGTGA 3 cut(s) 719, 928, 968
AvaI CYCGRG 1 cut(s) 800
AvaII GGWCC 1 cut(s) 909
AvrII CCTAGG 2 cut(s) 119, 491
BaeI ACNNNNGTAYC 2 cut(s) 788, 821
BauI CACGAG 1 cut(s) 90
BbvI GCAGC 7 cut(s) 169, 325, 370, 725, 753, 758, 959
BccI CCATC 2 cut(s) 665, 698
BceAI ACGGC 2 cut(s) 268, 658
BcgI CGANNNNNNTGC 2 cut(s) 675, 709
BciT130I CCWGG 2 cut(s) 348, 486
BciVI GTATCC 1 cut(s) 789
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 3 cut(s) 120, 380, 492
BfmI CTRYAG 1 cut(s) 945
BfuI GTATCC 1 cut(s) 789
BglII AGATCT 1 cut(s) 550
BisI GCNGC 8 cut(s) 183, 339, 384, 714, 742, 747, 948, 967
BlnI CCTAGG 2 cut(s) 119, 491
BlsI GCNGC 8 cut(s) 184, 340, 385, 715, 743, 748, 949, 968
Bme1390I CCNGG 2 cut(s) 348, 486
Bme18I GGWCC 1 cut(s) 909
BmeT110I CYCGRG 1 cut(s) 800
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 2 cut(s) 488, 909
BmrFI CCNGG 2 cut(s) 348, 486
BmrI ACTGGG 1 cut(s) 430
BmsI GCATC 6 cut(s) 245, 307, 473, 700, 748, 817
BmuI ACTGGG 1 cut(s) 430
BpuEI CTTGAG 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 7 cut(s) 48, 119, 223, 286, 346, 491, 912
BsaWI WCCGGW 1 cut(s) 434
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 287, 704
Bse1I ACTGG 4 cut(s) 108, 425, 598, 640
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 2 cut(s) 348, 486
BseDI CCNNGG 7 cut(s) 48, 119, 223, 286, 346, 491, 912
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 3 cut(s) 70, 287, 704
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 4 cut(s) 108, 425, 598, 640
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 7 cut(s) 169, 325, 370, 725, 753, 758, 959
Bsh1236I CGCG 2 cut(s) 390, 792
BshFI GGCC 1 cut(s) 489
BsiHKCI CYCGRG 1 cut(s) 800
BsiSI CCGG 1 cut(s) 435
BslFI GGGAC 2 cut(s) 263, 437
BslI CCNNNNNNNGG 3 cut(s) 70, 287, 704
BsmAI GTCTC 1 cut(s) 542
BsmFI GGGAC 2 cut(s) 263, 437
BsnI GGCC 1 cut(s) 489
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 800
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 3 cut(s) 550, 649, 808
Bsp19I CCATGG 1 cut(s) 912
Bsp68I TCGCGA 1 cut(s) 390
BspACI CCGC 3 cut(s) 792, 964, 967
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 2 cut(s) 390, 792
BspHI TCATGA 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 949
BspPI GGATC 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 4 cut(s) 108, 425, 598, 640
BssECI CCNNGG 7 cut(s) 48, 119, 223, 286, 346, 491, 912
BssMI GATC 3 cut(s) 550, 649, 808
BssSI CACGAG 1 cut(s) 90
BssT1I CCWWGG 5 cut(s) 48, 119, 223, 491, 912
Bst2BI CACGAG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 348, 486
Bst4CI ACNGT 2 cut(s) 148, 855
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 7 cut(s) 45, 187, 343, 388, 595, 875, 879
BstDEI CTNAG 2 cut(s) 468, 778
BstDSI CCRYGG 1 cut(s) 912
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 2 cut(s) 390, 792
BstHHI GCGC 2 cut(s) 647, 746
BstKTI GATC 3 cut(s) 553, 652, 811
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 3 cut(s) 550, 649, 808
BstMWI GCNNNNNNNGC 2 cut(s) 383, 470
BstNI CCWGG 2 cut(s) 348, 486
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 346, 484
BstSFI CTRYAG 1 cut(s) 945
BstUI CGCG 2 cut(s) 390, 792
BstV1I GCAGC 7 cut(s) 169, 325, 370, 725, 753, 758, 959
BstX2I RGATCY 2 cut(s) 550, 649
BstYI RGATCY 2 cut(s) 550, 649
BsuI GTATCC 1 cut(s) 789
BsuRI GGCC 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 912
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 261
BtuMI TCGCGA 1 cut(s) 390
Cac8I GCNNGC 7 cut(s) 45, 187, 343, 388, 595, 875, 879
CciI TCATGA 1 cut(s) 208
CfoI GCGC 2 cut(s) 647, 746
Cfr13I GGNCC 2 cut(s) 488, 909
CseI GACGC 1 cut(s) 242
Csp6I GTAC 4 cut(s) 4, 74, 509, 610
CviAII CATG 4 cut(s) 114, 209, 342, 913
CviQI GTAC 4 cut(s) 4, 74, 509, 610
DdeI CTNAG 2 cut(s) 468, 778
DpnI GATC 3 cut(s) 552, 651, 810
DpnII GATC 3 cut(s) 550, 649, 808
DrdI GACNNNNNNGTC 2 cut(s) 218, 239
DseDI GACNNNNNNGTC 2 cut(s) 218, 239
EciI GGCGGA 1 cut(s) 953
Eco130I CCWWGG 5 cut(s) 48, 119, 223, 491, 912
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 909
Eco57I CTGAAG 2 cut(s) 573, 589
Eco88I CYCGRG 1 cut(s) 800
EcoRII CCWGG 2 cut(s) 346, 484
EcoT14I CCWWGG 5 cut(s) 48, 119, 223, 491, 912
ErhI CCWWGG 5 cut(s) 48, 119, 223, 491, 912
FaeI CATG 4 cut(s) 117, 212, 345, 916
FaiI YATR 7 cut(s) 115, 210, 343, 737, 820, 896, 914
FaqI GGGAC 2 cut(s) 263, 437
FatI CATG 4 cut(s) 113, 208, 341, 912
FauI CCCGC 1 cut(s) 785
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 8 cut(s) 183, 339, 384, 714, 742, 747, 948, 967
FokI GGATG 1 cut(s) 211
Fsp4HI GCNGC 8 cut(s) 183, 339, 384, 714, 742, 747, 948, 967
FspBI CTAG 3 cut(s) 120, 380, 492
GlaI GCGC 2 cut(s) 646, 745
GluI GCNGC 8 cut(s) 183, 339, 384, 714, 742, 747, 948, 967
HaeIII GGCC 1 cut(s) 489
HapII CCGG 1 cut(s) 435
HgaI GACGC 1 cut(s) 242
HhaI GCGC 2 cut(s) 647, 746
Hin1II CATG 4 cut(s) 117, 212, 345, 916
Hin6I GCGC 2 cut(s) 645, 744
HinP1I GCGC 2 cut(s) 645, 744
HindIII AAGCTT 1 cut(s) 841
HinfI GANTC 6 cut(s) 99, 128, 325, 392, 497, 803
HpaII CCGG 1 cut(s) 435
HphI GGTGA 3 cut(s) 719, 928, 968
Hpy166II GTNNAC 1 cut(s) 572
Hpy188I TCNGA 6 cut(s) 36, 153, 290, 469, 808, 905
Hpy188III TCNNGA 4 cut(s) 209, 389, 403, 548
Hpy8I GTNNAC 1 cut(s) 572
HpyAV CCTTC 5 cut(s) 70, 183, 432, 675, 900
HpyCH4III ACNGT 2 cut(s) 148, 855
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 6 cut(s) 320, 341, 713, 761, 877, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 470
HpyF3I CTNAG 2 cut(s) 468, 778
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 4 cut(s) 117, 212, 345, 916
HspAI GCGC 2 cut(s) 645, 744
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 3 cut(s) 550, 649, 808
Lsp1109I GCAGC 7 cut(s) 169, 325, 370, 725, 753, 758, 959
LweI GCATC 6 cut(s) 245, 307, 473, 700, 748, 817
MaeI CTAG 3 cut(s) 120, 380, 492
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 3 cut(s) 136, 230, 556
MalI GATC 3 cut(s) 552, 651, 810
MboI GATC 3 cut(s) 550, 649, 808
MboII GAAGA 4 cut(s) 595, 665, 760, 931
MflI RGATCY 2 cut(s) 550, 649
MluCI AATT 3 cut(s) 414, 815, 886
MlyI GAGTC 3 cut(s) 137, 319, 812
MmeI TCCRAC 2 cut(s) 76, 874
MroXI GAANNNNTTC 2 cut(s) 147, 158
MseI TTAA 2 cut(s) 417, 984
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 2 cut(s) 348, 486
MvaI CCWGG 2 cut(s) 348, 486
MvnI CGCG 2 cut(s) 390, 792
MwoI GCNNNNNNNGC 2 cut(s) 383, 470
NcoI CCATGG 1 cut(s) 912
NdeII GATC 3 cut(s) 550, 649, 808
NlaIII CATG 4 cut(s) 117, 212, 345, 916
NmuCI GTSAC 2 cut(s) 230, 556
NruI TCGCGA 1 cut(s) 390
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 800
PagI TCATGA 1 cut(s) 208
PdmI GAANNNNTTC 2 cut(s) 147, 158
PfeI GAWTC 3 cut(s) 99, 392, 497
PkrI GCNGC 8 cut(s) 184, 340, 385, 715, 743, 748, 949, 968
PleI GAGTC 3 cut(s) 136, 319, 811
PpsI GAGTC 3 cut(s) 136, 319, 811
Psp6I CCWGG 2 cut(s) 346, 484
PspGI CCWGG 2 cut(s) 346, 484
PspPI GGNCC 2 cut(s) 488, 909
PspXI VCTCGAGB 1 cut(s) 800
PstI CTGCAG 1 cut(s) 949
PsuI RGATCY 2 cut(s) 550, 649
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 4 cut(s) 5, 75, 510, 611
RsaNI GTAC 4 cut(s) 4, 74, 509, 610
SaqAI TTAA 2 cut(s) 417, 984
SatI GCNGC 8 cut(s) 183, 339, 384, 714, 742, 747, 948, 967
Sau3AI GATC 3 cut(s) 550, 649, 808
Sau96I GGNCC 2 cut(s) 488, 909
SchI GAGTC 3 cut(s) 137, 319, 812
ScrFI CCNGG 2 cut(s) 348, 486
SfaNI GCATC 6 cut(s) 245, 307, 473, 700, 748, 817
SfcI CTRYAG 1 cut(s) 945
Sfr274I CTCGAG 1 cut(s) 800
SinI GGWCC 1 cut(s) 909
SlaI CTCGAG 1 cut(s) 800
SmlI CTYRAG 2 cut(s) 546, 800
SmoI CTYRAG 2 cut(s) 546, 800
SphI GCATGC 1 cut(s) 345
Sse9I AATT 3 cut(s) 414, 815, 886
SsiI CCGC 3 cut(s) 792, 964, 967
SspMI CTAG 3 cut(s) 120, 380, 492
StyD4I CCNGG 2 cut(s) 346, 484
StyI CCWWGG 5 cut(s) 48, 119, 223, 491, 912
TaaI ACNGT 2 cut(s) 148, 855
TaiI ACGT 1 cut(s) 429
TaqI TCGA 2 cut(s) 726, 801
TasI AATT 3 cut(s) 414, 815, 886
TatI WGTACW 1 cut(s) 508
TauI GCSGC 1 cut(s) 969
TfiI GAWTC 3 cut(s) 99, 392, 497
Tru1I TTAA 2 cut(s) 417, 984
Tru9I TTAA 2 cut(s) 417, 984
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 2 cut(s) 230, 556
TseI GCWGC 7 cut(s) 182, 338, 383, 713, 741, 746, 947
Tsp45I GTSAC 2 cut(s) 230, 556
TspDTI ATGAA 3 cut(s) 102, 197, 657
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 909
XapI RAATTY 1 cut(s) 886
XceI RCATGY 1 cut(s) 345
XhoI CTCGAG 1 cut(s) 800
XmaJI CCTAGG 2 cut(s) 119, 491
XmnI GAANNNNTTC 2 cut(s) 147, 158
XspI CTAG 3 cut(s) 120, 380, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.