FvH4_5g24010

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001187
Physical Location & Seq
Reverse (-)
15276659 .. 15278290
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24010.t1

Sequence Viewer

Length: 990 bp
ATGTACCAGAAGTCCTCCATTTCCATTCTGTTTCTGGCCTTGCTTGCCTTGGCTACCACCTTCCCCAGCTCGGTGCAAAGCCAAAGCACCCGAGTTGGATTCTATTCCAGCTCATGTCCTAGGGCAGAGTCCATTGTCACGCAAACAGTTCAGAAGCATTTCAAATCCACTCCTGCCATTGCTCCTGGCTTATTAAGGATGCACTTTCATGATTGCTTTGTCCAAGGTTGCGACGCTTCTGTTCTCCTCGACGGCGCAACCACTGAAAAAACCGCTGGCCCGAACCGTGGTTTGAGAGGTTGGGAAGTCATCGACGACGCAAAGACTCAGCTTGAAGCTGCATGCCCTGGTGTTGTTTCATGTGCTGACATTCTTGCCCTAGCTGCTCGCGATTCTGTCGTCTTGACAAAGGGAATTAACTGGAAGGTGCCTACCGGAAGGTTAGACGGACGAGTATCATTGGCATCTGAGACTAGCAATTTGCCTGGCTTTAGGGATTCCATTGATGTACAAAAGAGCAAGTTCCAAGCTCTTGGTCTCAACACTCAAGATCTTGTCACGCTTGTTGGTGGACACACTATTGGCACTTCAGCTTGTCAGTTCTTCAGGTACAGGCTATACAACTTCACCACAACCGGAAACGGCGCAGACCCTACCATCAACCCTTCATTTGTTCCTCAACTGCGAGCACTTTGCCCGCAAGACGGCGATGCAGCCAAGCGTGTCGATTTGGACACAGGCAGCGCAGCTCGATTTGATGCAGCATTCTTTACAAACTTAAGGAATGGTCGCGGAATACTCGAGTCTGATCAAATGTTATGGACTGATGCCTCCACAAAAAGCTTTGTCCAAAGGTTCTTGGGTGTGAGAGGCTTACAAGCATTGAACTTCAATGTTGAGTTCGGAAGGTCCATGGTGAAGATGAGTAATATCGGTGTCAAGTCTGCAACAAACGGTGAAATTCGCCGTGTTTGTTCTGCAGTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

330

Amino Acids

35.48

Weight (kDa)

9.06

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 286 1.9e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 427
AccII CGCG 2 cut(s) 390, 792
AciI CCGC 3 cut(s) 273, 698, 792
AcsI RAATTY 1 cut(s) 960
AcuI CTGAAG 2 cut(s) 573, 589
AfaI GTAC 3 cut(s) 5, 510, 611
AfiI CCNNNNNNNGG 3 cut(s) 70, 287, 704
AflII CTTAAG 1 cut(s) 778
AgsI TTSAA 4 cut(s) 163, 335, 886, 892
AjnI CCWGG 3 cut(s) 184, 346, 484
AluBI AGCT 9 cut(s) 69, 111, 331, 338, 383, 530, 593, 749, 843
AluI AGCT 9 cut(s) 69, 111, 331, 338, 383, 530, 593, 749, 843
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 2 cut(s) 464, 542
Ama87I CYCGRG 2 cut(s) 90, 800
AoxI GGCC 2 cut(s) 36, 277
ApeKI GCWGC 6 cut(s) 338, 383, 713, 741, 746, 761
ApoI RAATTY 1 cut(s) 960
ArsI GACNNNNNNTTYG 2 cut(s) 463, 495
Asp700I GAANNNNTTC 1 cut(s) 158
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 3 cut(s) 257, 647, 746
AspS9I GGNCC 2 cut(s) 278, 909
AsuHPI GGTGA 3 cut(s) 619, 928, 968
AvaI CYCGRG 2 cut(s) 90, 800
AvaII GGWCC 1 cut(s) 909
AvrII CCTAGG 1 cut(s) 119
BanI GGYRCC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 6 cut(s) 325, 370, 725, 753, 758, 773
BccI CCATC 1 cut(s) 665
BceAI ACGGC 4 cut(s) 268, 658, 721, 951
BcgI CGANNNNNNTGC 2 cut(s) 675, 709
BciT130I CCWGG 3 cut(s) 186, 348, 486
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 2 cut(s) 464, 542
BfaI CTAG 3 cut(s) 120, 380, 474
BfmI CTRYAG 1 cut(s) 978
BfrI CTTAAG 1 cut(s) 778
BglII AGATCT 1 cut(s) 550
BisI GCNGC 6 cut(s) 339, 384, 714, 742, 747, 762
BlnI CCTAGG 1 cut(s) 119
BlsI GCNGC 6 cut(s) 340, 385, 715, 743, 748, 763
Bme1390I CCNGG 3 cut(s) 186, 348, 486
Bme18I GGWCC 1 cut(s) 909
BmeT110I CYCGRG 2 cut(s) 90, 800
BmgT120I GGNCC 2 cut(s) 278, 909
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 3 cut(s) 186, 348, 486
BmsI GCATC 5 cut(s) 189, 473, 700, 748, 817
BpuEI CTTGAG 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 6 cut(s) 48, 119, 223, 286, 346, 912
BsaWI WCCGGW 2 cut(s) 434, 635
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 287, 704
Bse1I ACTGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 3 cut(s) 186, 348, 486
BseDI CCNNGG 6 cut(s) 48, 119, 223, 286, 346, 912
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 3 cut(s) 70, 287, 704
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 341, 459
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 6 cut(s) 325, 370, 725, 753, 758, 773
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 2 cut(s) 390, 792
BshFI GGCC 2 cut(s) 38, 279
BshNI GGYRCC 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 691
BsiHKCI CYCGRG 2 cut(s) 90, 800
BsiSI CCGG 2 cut(s) 435, 636
BslI CCNNNNNNNGG 3 cut(s) 70, 287, 704
BsmAI GTCTC 2 cut(s) 464, 542
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 2 cut(s) 38, 279
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 2 cut(s) 90, 800
Bsp1286I GDGCHC 1 cut(s) 691
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 2 cut(s) 550, 808
Bsp19I CCATGG 1 cut(s) 912
Bsp68I TCGCGA 1 cut(s) 390
BspACI CCGC 3 cut(s) 273, 698, 792
BspANI GGCC 2 cut(s) 38, 279
BspCNI CTCAG 2 cut(s) 340, 460
BspFNI CGCG 2 cut(s) 390, 792
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 429
BspMAI CTGCAG 1 cut(s) 982
BspT107I GGYRCC 1 cut(s) 427
BspTI CTTAAG 1 cut(s) 778
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 6 cut(s) 48, 119, 223, 286, 346, 912
BssMI GATC 2 cut(s) 550, 808
BssT1I CCWWGG 4 cut(s) 48, 119, 223, 912
Bst2UI CCWGG 3 cut(s) 186, 348, 486
Bst4CI ACNGT 3 cut(s) 148, 287, 956
BstAFI CTTAAG 1 cut(s) 778
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 6 cut(s) 45, 277, 343, 388, 687, 698
BstDEI CTNAG 2 cut(s) 327, 468
BstDSI CCRYGG 2 cut(s) 286, 912
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 2 cut(s) 390, 792
BstHHI GCGC 3 cut(s) 257, 647, 746
BstKTI GATC 2 cut(s) 553, 811
BstMAI GTCTC 2 cut(s) 464, 542
BstMBI GATC 2 cut(s) 550, 808
BstMWI GCNNNNNNNGC 2 cut(s) 44, 383
BstNI CCWGG 3 cut(s) 186, 348, 486
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 184, 346, 484
BstSFI CTRYAG 1 cut(s) 978
BstUI CGCG 2 cut(s) 390, 792
BstV1I GCAGC 6 cut(s) 325, 370, 725, 753, 758, 773
BstX2I RGATCY 1 cut(s) 550
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 1 cut(s) 550
BsuRI GGCC 2 cut(s) 38, 279
BtgI CCRYGG 2 cut(s) 286, 912
BtgZI GCGATG 1 cut(s) 723
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 261
BtuMI TCGCGA 1 cut(s) 390
Cac8I GCNNGC 6 cut(s) 45, 277, 343, 388, 687, 698
CciI TCATGA 1 cut(s) 208
CfoI GCGC 3 cut(s) 257, 647, 746
Cfr13I GGNCC 2 cut(s) 278, 909
CseI GACGC 2 cut(s) 242, 326
Csp6I GTAC 3 cut(s) 4, 509, 610
CviAII CATG 5 cut(s) 114, 209, 342, 360, 913
CviQI GTAC 3 cut(s) 4, 509, 610
DdeI CTNAG 2 cut(s) 327, 468
DpnI GATC 2 cut(s) 552, 810
DpnII GATC 2 cut(s) 550, 808
Eco130I CCWWGG 4 cut(s) 48, 119, 223, 912
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 909
Eco57I CTGAAG 2 cut(s) 573, 589
Eco88I CYCGRG 2 cut(s) 90, 800
EcoRII CCWGG 3 cut(s) 184, 346, 484
EcoT14I CCWWGG 4 cut(s) 48, 119, 223, 912
ErhI CCWWGG 4 cut(s) 48, 119, 223, 912
FaeI CATG 5 cut(s) 117, 212, 345, 363, 916
FaiI YATR 7 cut(s) 115, 210, 343, 361, 619, 820, 914
FatI CATG 5 cut(s) 113, 208, 341, 359, 912
FauI CCCGC 1 cut(s) 705
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 6 cut(s) 339, 384, 714, 742, 747, 762
FokI GGATG 1 cut(s) 211
Fsp4HI GCNGC 6 cut(s) 339, 384, 714, 742, 747, 762
FspBI CTAG 3 cut(s) 120, 380, 474
GlaI GCGC 3 cut(s) 256, 646, 745
GluI GCNGC 6 cut(s) 339, 384, 714, 742, 747, 762
GsaI CCCAGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 38, 279
HapII CCGG 2 cut(s) 435, 636
HgaI GACGC 2 cut(s) 242, 326
HhaI GCGC 3 cut(s) 257, 647, 746
Hin1II CATG 5 cut(s) 117, 212, 345, 363, 916
Hin6I GCGC 3 cut(s) 255, 645, 744
HinP1I GCGC 3 cut(s) 255, 645, 744
HincII GTYRAC 1 cut(s) 985
HindII GTYRAC 1 cut(s) 985
HindIII AAGCTT 1 cut(s) 841
HinfI GANTC 6 cut(s) 99, 128, 325, 392, 497, 803
HpaI GTTAAC 1 cut(s) 985
HpaII CCGG 2 cut(s) 435, 636
HphI GGTGA 3 cut(s) 619, 928, 968
Hpy166II GTNNAC 2 cut(s) 572, 985
Hpy188I TCNGA 4 cut(s) 153, 469, 808, 905
Hpy188III TCNNGA 4 cut(s) 209, 389, 403, 548
Hpy8I GTNNAC 2 cut(s) 572, 985
Hpy99I CGWCG 4 cut(s) 236, 254, 317, 320
HpyAV CCTTC 5 cut(s) 70, 418, 432, 675, 900
HpyCH4III ACNGT 3 cut(s) 148, 287, 956
HpyCH4V TGCA 7 cut(s) 76, 202, 341, 713, 761, 947, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 383
HpyF3I CTNAG 2 cut(s) 327, 468
Hsp92II CATG 5 cut(s) 117, 212, 345, 363, 916
HspAI GCGC 3 cut(s) 255, 645, 744
Ksp22I TGATCA 1 cut(s) 808
KspAI GTTAAC 1 cut(s) 985
Kzo9I GATC 2 cut(s) 550, 808
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 6 cut(s) 325, 370, 725, 753, 758, 773
LweI GCATC 5 cut(s) 189, 473, 700, 748, 817
MaeI CTAG 3 cut(s) 120, 380, 474
MaeIII GTNAC 2 cut(s) 136, 556
MalI GATC 2 cut(s) 552, 810
MboI GATC 2 cut(s) 550, 808
MboII GAAGA 2 cut(s) 595, 931
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 1 cut(s) 691
MluCI AATT 3 cut(s) 414, 478, 960
MlyI GAGTC 3 cut(s) 137, 319, 812
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 6 cut(s) 25, 257, 290, 687, 841, 863
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 4 cut(s) 194, 417, 779, 984
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 275
MspCI CTTAAG 1 cut(s) 778
MspI CCGG 2 cut(s) 435, 636
MspR9I CCNGG 3 cut(s) 186, 348, 486
Mva1269I GAATGC 1 cut(s) 764
MvaI CCWGG 3 cut(s) 186, 348, 486
MvnI CGCG 2 cut(s) 390, 792
MwoI GCNNNNNNNGC 2 cut(s) 44, 383
NcoI CCATGG 1 cut(s) 912
NdeII GATC 2 cut(s) 550, 808
NlaIII CATG 5 cut(s) 117, 212, 345, 363, 916
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 2 cut(s) 136, 556
NruI TCGCGA 1 cut(s) 390
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 800
PagI TCATGA 1 cut(s) 208
PctI GAATGC 1 cut(s) 764
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 3 cut(s) 99, 392, 497
PkrI GCNGC 6 cut(s) 340, 385, 715, 743, 748, 763
PleI GAGTC 3 cut(s) 136, 319, 811
PpsI GAGTC 3 cut(s) 136, 319, 811
Psp6I CCWGG 3 cut(s) 184, 346, 484
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 3 cut(s) 184, 346, 484
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 2 cut(s) 278, 909
PspXI VCTCGAGB 1 cut(s) 800
PstI CTGCAG 1 cut(s) 982
PsuI RGATCY 1 cut(s) 550
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 3 cut(s) 5, 510, 611
RsaNI GTAC 3 cut(s) 4, 509, 610
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 4 cut(s) 194, 417, 779, 984
SatI GCNGC 6 cut(s) 339, 384, 714, 742, 747, 762
Sau3AI GATC 2 cut(s) 550, 808
Sau96I GGNCC 2 cut(s) 278, 909
SchI GAGTC 3 cut(s) 137, 319, 812
ScrFI CCNGG 3 cut(s) 186, 348, 486
SduI GDGCHC 1 cut(s) 691
SfaNI GCATC 5 cut(s) 189, 473, 700, 748, 817
SfcI CTRYAG 1 cut(s) 978
Sfr274I CTCGAG 1 cut(s) 800
SinI GGWCC 1 cut(s) 909
SlaI CTCGAG 1 cut(s) 800
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 3 cut(s) 546, 778, 800
SmoI CTYRAG 3 cut(s) 546, 778, 800
SphI GCATGC 1 cut(s) 345
Sse9I AATT 3 cut(s) 414, 478, 960
SsiI CCGC 3 cut(s) 273, 698, 792
SspMI CTAG 3 cut(s) 120, 380, 474
StyD4I CCNGG 3 cut(s) 184, 346, 484
StyI CCWWGG 4 cut(s) 48, 119, 223, 912
TaaI ACNGT 3 cut(s) 148, 287, 956
TaqI TCGA 5 cut(s) 249, 312, 726, 751, 801
TasI AATT 3 cut(s) 414, 478, 960
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 3 cut(s) 99, 392, 497
Tru1I TTAA 4 cut(s) 194, 417, 779, 984
Tru9I TTAA 4 cut(s) 194, 417, 779, 984
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 2 cut(s) 136, 556
TseI GCWGC 6 cut(s) 338, 383, 713, 741, 746, 761
Tsp45I GTSAC 2 cut(s) 136, 556
TspDTI ATGAA 3 cut(s) 197, 348, 657
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 268
Vha464I CTTAAG 1 cut(s) 778
VpaK11BI GGWCC 1 cut(s) 909
XapI RAATTY 1 cut(s) 960
XceI RCATGY 1 cut(s) 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 800
XmaJI CCTAGG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 3 cut(s) 120, 380, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.