Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001701.1

Orthogroup ID

OG0001187

Physical Location & Seq

Genomic Coordinates Reverse (-)

108754 .. 109143

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001701.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgtaccagaagtcctccatttcggttatgtttctggccatgcttgccttggctaccaccttccccagctcggtgcaaagccaaagcacccgagttggattctattccagttcatgtcctaaggcagagtccattgtcacacaaacagttcagaagcatttcacatccactccttctattgctcctggcttattgaggatgcactttcatgactgctttgtccaaggttgtgacgcttctgttctcctcaacggcgcaaacactgaaaaaactgccggcccgaacctcggattgagaggttgggaagtcattgacgatgcaaagactcagcttgaagctgcatgccctgtcttcccatgcttgtgttctacaacgccatgcaaccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

129

Amino Acids

13.85

Weight (kDa)

6.79

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39580 AT5G39580 AT5G64120
fragaria_vesca	FvH4_5g21780 FvH4_5g21800 FvH4_5g24010
malus_domestica	MD00G1088300.v1.1 MD00G1088400.v1.1 MD03G1084400.v1.1 MD08G1230700.v1.1 MD08G1230800.v1.1 MD08G1230900.v1.1 MD08G1231000.v1.1 MD08G1231100.v1.1
pyrus_communis	pycom03g06660 pycom08g20060 pycom08g20070 pycom08g20080 pycom08g20090
rosa_chinensis	RchiOBHm_Chr7g0209261 RchiOBHm_Chr7g0209281 RchiOBHm_Chr7g0209291 RchiOBHm_Chr7g0209311 RchiOBHm_Chr7g0209321
rosa_laevigata	RLG00000003144 RLG00000003145 RLG00000003147 RLG00000003148 RLG00000003150
rosa_multiflora	Rmu_co8212558.1_g000001 Rmu_sc0001701.1_g000016 Rmu_sc0001701.1_g000017 Rmu_sc0037970.1_g000001 Rmu_sc0037970.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249520 Rroxscaffold_3G00249530 Rroxscaffold_3G00249550 Rroxscaffold_3G00249560 Rroxscaffold_3G00249580
rosa_rugosa	Rorug07G0111000 Rorug07G0111100 Rorug07G0111300 Rorug07G0111400
rosa_samantha	Rh7AG245300 Rh7AG245400 Rh7BG240100 Rh7BG240200 Rh7BG240400 Rh7BG240500 Rh7CG260400 Rh7CG260600 Rh7CG260700 Rh7CG260800 Rh7DG251700 Rh7DG251800
rosa_wichuraiana	Rw7G020770 Rw7G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	70, 287
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	3 cut(s)	69, 331, 338
AluI	AGCT	3 cut(s)	69, 331, 338
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	2 cut(s)	36, 277
ApeKI	GCWGC	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	90
AxyI	CCTNAGG	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	189, 307
BpiI	GAAGAC	1 cut(s)	343
BsaJI	CCNNGG	3 cut(s)	48, 223, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 287
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	108
Bse21I	CCTNAGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	3 cut(s)	48, 223, 286
BseGI	GGATG	2 cut(s)	164, 204
BseLI	CCNNNNNNNGG	2 cut(s)	70, 287
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	65
BshFI	GGCC	2 cut(s)	38, 279
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	2 cut(s)	70, 287
BsnI	GGCC	2 cut(s)	38, 279
BsoBI	CYCGRG	1 cut(s)	90
BspANI	GGCC	2 cut(s)	38, 279
BspCNI	CTCAG	1 cut(s)	340
BspHI	TCATGA	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	48, 223, 286
BssT1I	CCWWGG	2 cut(s)	48, 223
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	148
BstC8I	GCNNGC	3 cut(s)	45, 277, 343
BstDEI	CTNAG	2 cut(s)	120, 327
BstF5I	GGATG	2 cut(s)	164, 204
BstHHI	GCGC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	343
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	38, 279
BtsCI	GGATG	2 cut(s)	164, 204
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	3 cut(s)	45, 277, 343
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	278
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	6 cut(s)	40, 114, 209, 342, 357, 378
CviJI	RGCY	8 cut(s)	38, 53, 69, 81, 189, 279, 331, 338
CviKI_1	RGCY	8 cut(s)	38, 53, 69, 81, 189, 279, 331, 338
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	120, 327
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	48, 223
Eco81I	CCTNAGG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	48, 223
ErhI	CCWWGG	2 cut(s)	48, 223
FaeI	CATG	6 cut(s)	43, 117, 212, 345, 360, 381
FaiI	YATR	7 cut(s)	29, 41, 115, 210, 343, 358, 379
FatI	CATG	6 cut(s)	39, 113, 208, 341, 356, 377
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	2 cut(s)	151, 211
Fsp4HI	GCNGC	1 cut(s)	339
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	339
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	38, 279
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	6 cut(s)	43, 117, 212, 345, 360, 381
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	3 cut(s)	99, 128, 325
HpaII	CCGG	1 cut(s)	276
Hpy188I	TCNGA	2 cut(s)	153, 290
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	70, 183
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	5 cut(s)	76, 202, 320, 341, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	2 cut(s)	120, 327
Hsp92II	CATG	6 cut(s)	43, 117, 212, 345, 360, 381
HspAI	GCGC	1 cut(s)	255
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	8 cut(s)	20, 20, 79, 121, 171, 198, 289, 360
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	2 cut(s)	189, 307
MaeIII	GTNAC	2 cut(s)	136, 230
MboII	GAAGA	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	137, 319
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	25, 189, 257, 290, 296
Mox20I	TGGCCA	1 cut(s)	38
MroNI	GCCGGC	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	38
MslI	CAYNNNNRTG	2 cut(s)	207, 361
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	44
NaeI	GCCGGC	1 cut(s)	277
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	6 cut(s)	43, 117, 212, 345, 360, 381
NmuCI	GTSAC	2 cut(s)	136, 230
NspI	RCATGY	1 cut(s)	345
PaeI	GCATGC	1 cut(s)	345
PagI	TCATGA	1 cut(s)	208
PdiI	GCCGGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	2 cut(s)	136, 319
PpsI	GAGTC	2 cut(s)	136, 319
Psp6I	CCWGG	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	278
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	207, 361
SatI	GCNGC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	2 cut(s)	137, 319
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	7 cut(s)	62, 71, 229, 288, 301, 333, 340
SfaNI	GCATC	2 cut(s)	189, 307
SmiMI	CAYNNNNRTG	2 cut(s)	207, 361
SphI	GCATGC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	2 cut(s)	48, 223
TaaI	ACNGT	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	99
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	136, 230
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	2 cut(s)	136, 230
TspDTI	ATGAA	2 cut(s)	102, 197
TspRI	CASTG	1 cut(s)	268
XceI	RCATGY	1 cut(s)	345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.