MD08G1231100.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0001187
Physical Location & Seq
Forward (+)
29729741 .. 29730343
603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1231100.v1.1.491

Sequence Viewer

Length: 423 bp
ATGAGCTCCTCCAAAATGTTATTAATGTACTTTCTACAGCTACTTGTTGGTTTGGCTACCACCTTGGTGATGGTGCAAGGCCAGGGCCAACTTACGCGCGTAGGATTCTATTCGAGTACATGTCCGGCAGCTGAGTCTATTGTCAAACAAACAGTTCAAACTCATTTCAACTCCAACCCTTCCGTTGCTCCTGGCTTGTTAAGGATGCACTTCCATGACTGCTTTGTCCAAGGTTGTGATGCTTCGGTCCTACTTGACGGCCCCAACACTGAGAAAACCGCTGGGCCAAACCTCGGTTTAAGAGGTTGGGAAGTCATTGACGATGCAAAGACCAAGCTCGAAGCTGCATGCCCCGGAGTTGTTTCTTGTGCAGATATTCTAGCCCTCGCTGCCCGTGATTCCGTGGTTCTCAGGAGACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

141

Amino Acids

14.98

Weight (kDa)

6.8

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 137 9.3e-38 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccII CGCG 2 cut(s) 97, 99
AciI CCGC 1 cut(s) 279
AfaI GTAC 2 cut(s) 29, 118
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 2 cut(s) 158, 169
AjnI CCWGG 2 cut(s) 81, 190
AleI CACNNNNGTG 1 cut(s) 65
AluBI AGCT 5 cut(s) 6, 40, 131, 337, 344
AluI AGCT 5 cut(s) 6, 40, 131, 337, 344
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 409
AoxI GGCC 4 cut(s) 79, 85, 259, 284
ApeKI GCWGC 3 cut(s) 128, 344, 389
AseI ATTAAT 1 cut(s) 23
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 4 cut(s) 85, 247, 260, 284
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 140, 331, 376
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 2 cut(s) 83, 192
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 409
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 2 cut(s) 35, 419
BisI GCNGC 3 cut(s) 129, 345, 390
BlsI GCNGC 3 cut(s) 130, 346, 391
Bme1390I CCNGG 3 cut(s) 83, 192, 354
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 4 cut(s) 85, 247, 260, 284
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 3 cut(s) 83, 192, 354
BmsI GCATC 3 cut(s) 195, 229, 313
BpuMI CCSGG 1 cut(s) 354
BsaJI CCNNGG 6 cut(s) 63, 82, 229, 292, 352, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 293
BseBI CCWGG 2 cut(s) 83, 192
BseDI CCNNGG 6 cut(s) 63, 82, 229, 292, 352, 402
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 2 cut(s) 123, 261
BseXI GCAGC 3 cut(s) 140, 331, 376
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 2 cut(s) 97, 99
BshFI GGCC 4 cut(s) 81, 87, 261, 286
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 125, 354
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 409
BsnI GGCC 4 cut(s) 81, 87, 261, 286
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 1 cut(s) 279
BspANI GGCC 4 cut(s) 81, 87, 261, 286
BspCNI CTCAG 3 cut(s) 124, 262, 423
BspFNI CGCG 2 cut(s) 97, 99
BspLI GGNNCC 1 cut(s) 262
BssECI CCNNGG 6 cut(s) 63, 82, 229, 292, 352, 402
BssT1I CCWWGG 2 cut(s) 63, 229
Bst2UI CCWGG 2 cut(s) 83, 192
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 3 cut(s) 132, 270, 410
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 1 cut(s) 210
BstFNI CGCG 2 cut(s) 97, 99
BstHHI GCGC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 409
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 2 cut(s) 83, 192
BstNSI RCATGY 2 cut(s) 123, 351
BstSCI CCNGG 3 cut(s) 81, 190, 352
BstSFI CTRYAG 2 cut(s) 35, 419
BstUI CGCG 2 cut(s) 97, 99
BstV1I GCAGC 3 cut(s) 140, 331, 376
BsuRI GGCC 4 cut(s) 81, 87, 261, 286
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 4 cut(s) 85, 247, 260, 284
Csp6I GTAC 2 cut(s) 28, 117
CviAII CATG 3 cut(s) 120, 215, 348
CviQI GTAC 2 cut(s) 28, 117
DdeI CTNAG 3 cut(s) 132, 270, 410
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 63, 229
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 81, 190
EcoT14I CCWWGG 2 cut(s) 63, 229
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 63, 229
FaeI CATG 3 cut(s) 123, 218, 351
FaiI YATR 4 cut(s) 121, 216, 349, 421
FatI CATG 3 cut(s) 119, 214, 347
Fnu4HI GCNGC 3 cut(s) 129, 345, 390
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 129, 345, 390
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 129, 345, 390
GsaI CCCAGC 1 cut(s) 285
HaeIII GGCC 4 cut(s) 81, 87, 261, 286
HapII CCGG 2 cut(s) 125, 354
HhaI GCGC 1 cut(s) 99
Hin1II CATG 3 cut(s) 123, 218, 351
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 3 cut(s) 105, 134, 398
HpaII CCGG 2 cut(s) 125, 354
HphI GGTGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 412
HpyAV CCTTC 1 cut(s) 189
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 5 cut(s) 76, 208, 326, 347, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 3 cut(s) 132, 270, 410
Hsp92II CATG 3 cut(s) 123, 218, 351
HspAI GCGC 1 cut(s) 97
LmnI GCTCC 2 cut(s) 11, 193
LpnPI CCDG 8 cut(s) 68, 95, 138, 177, 204, 267, 367, 397
Lsp1109I GCAGC 3 cut(s) 140, 331, 376
LweI GCATC 3 cut(s) 195, 229, 313
MaeI CTAG 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 4 cut(s) 19, 296, 302, 395
MseI TTAA 3 cut(s) 23, 200, 299
MslI CAYNNNNRTG 2 cut(s) 65, 213
MspA1I CMGCKG 2 cut(s) 131, 281
MspI CCGG 2 cut(s) 125, 354
MspR9I CCNGG 3 cut(s) 83, 192, 354
MvaI CCWGG 2 cut(s) 83, 192
MvnI CGCG 2 cut(s) 97, 99
MwoI GCNNNNNNNGC 1 cut(s) 389
NciI CCSGG 1 cut(s) 354
NlaIII CATG 3 cut(s) 123, 218, 351
NlaIV GGNNCC 1 cut(s) 262
NspI RCATGY 2 cut(s) 123, 351
OliI CACNNNNGTG 1 cut(s) 65
PaeI GCATGC 1 cut(s) 351
PciI ACATGT 1 cut(s) 119
PfeI GAWTC 2 cut(s) 105, 398
PkrI GCNGC 3 cut(s) 130, 346, 391
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PscI ACATGT 1 cut(s) 119
PshBI ATTAAT 1 cut(s) 23
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 81, 190
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 2 cut(s) 81, 190
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 4 cut(s) 85, 247, 260, 284
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 2 cut(s) 29, 118
RsaNI GTAC 2 cut(s) 28, 117
RseI CAYNNNNRTG 2 cut(s) 65, 213
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 3 cut(s) 23, 200, 299
SatI GCNGC 3 cut(s) 129, 345, 390
Sau96I GGNCC 4 cut(s) 85, 247, 260, 284
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 3 cut(s) 83, 192, 354
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 8, 42, 65, 133, 235, 294, 307, 339, 346
SfaNI GCATC 3 cut(s) 195, 229, 313
SfcI CTRYAG 2 cut(s) 35, 419
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 2 cut(s) 65, 213
SphI GCATGC 1 cut(s) 351
SsiI CCGC 1 cut(s) 279
SspMI CTAG 1 cut(s) 380
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 81, 190, 352
StyI CCWWGG 2 cut(s) 63, 229
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 113, 339
TaqII GACCGA 1 cut(s) 235
TatI WGTACW 2 cut(s) 27, 116
TfiI GAWTC 2 cut(s) 105, 398
Tru1I TTAA 3 cut(s) 23, 200, 299
Tru9I TTAA 3 cut(s) 23, 200, 299
TscAI CASTG 1 cut(s) 274
TseI GCWGC 3 cut(s) 128, 344, 389
TspGWI ACGGA 2 cut(s) 172, 391
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 247
VspI ATTAAT 1 cut(s) 23
XceI RCATGY 2 cut(s) 123, 351
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.