Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001187

Physical Location & Seq

Genomic Coordinates Reverse (-)

25659257 .. 25661007

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGTTTGGTTAGATCATTGTGCTTATTAATAACCTTCCTTAATTGTCTCATCATCTCGGTTCATGGCCAAGCCACCGCAAGGCCTGGTCCTGTTTCCGGCACTAGGATTGGGTTTTACTTAACTACGTGTCCTAGAGCTGAGACTATTGTCCGAAACGCCGTGAATGCTGGTTTCAGTTCTGACCCCAGAATCGCACCCGGAATACTGAGAATGCATTTCCACGACTGTTTTGTCCAAGGTTGTGACGGTTCGATCCTTATATCCGGAGCTAACACCGAGAGAACCGCCGGTCCGAACCTCAATCTCCAAGGATTTGAAGTCATAGACAACGCCAAAACGCAGCTCGAAGCCGCGTGTCCTGGAGTTGTCTCTTGTGCTGATATTTTAGCATTAGCCGCTCGTGACACAGTCATTCTCACTCAAGGAACAGGCTGGCAAGTACCAACGGGACGTAGAGATGGTAGAGTTTCTTTGGCTTCGAATGCTAACAATCTCCCTGGTCCCCGTGACTCCGTTGCCGTTCAACAACAGAAATTCTCCGCCTTGGGACTCAATACTCGTGATCTCGTCGTCCTCGTCGGAGGACACACGATCGGAACAGCAGGATGTGGTGTATTCAGGAACAGGCTATTCAATACCACCGGACAAACCGCAGATCCAACCATCGACCCAACATTTTTGGCGCAGCTTCAAACACAATGTCCCCAAAACGGCGACGGTTCAGTGCGCGTGGATCTCGACACCGGAAGCGGAAGCACTTGGGACACTTCTTACTACAACAACCTAAGCCGTGGGCGTGGAGTTCTCCAATCCGATCAAGTCCTTTGGACCGATCCAGCCACTAGACCCATAGTGCAACAATTGATGGCTCCTAGAAGCACCTTCAACGTTGAGTTTGCGAGGTCAATGGTCAGAATGAGTAATATCGGTGTGGTTACCGGAGCTAATGGGGAAATCCGTAGGGTTTGCTCTGCGGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0006725 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009636 GO:0009664 GO:0009698 GO:0009808 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0019748 GO:0030054 GO:0030312 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045730 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1901360 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

328

Amino Acids

34.89

Weight (kDa)

8.6

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	51 - 289	1.8e-86	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39580 AT5G39580 AT5G64120
fragaria_vesca	FvH4_5g21780 FvH4_5g21800 FvH4_5g24010
malus_domestica	MD00G1088300.v1.1 MD00G1088400.v1.1 MD03G1084400.v1.1 MD08G1230700.v1.1 MD08G1230800.v1.1 MD08G1230900.v1.1 MD08G1231000.v1.1 MD08G1231100.v1.1
pyrus_communis	pycom03g06660 pycom08g20060 pycom08g20070 pycom08g20080 pycom08g20090
rosa_chinensis	RchiOBHm_Chr7g0209261 RchiOBHm_Chr7g0209281 RchiOBHm_Chr7g0209291 RchiOBHm_Chr7g0209311 RchiOBHm_Chr7g0209321
rosa_laevigata	RLG00000003144 RLG00000003145 RLG00000003147 RLG00000003148 RLG00000003150
rosa_multiflora	Rmu_co8212558.1_g000001 Rmu_sc0001701.1_g000016 Rmu_sc0001701.1_g000017 Rmu_sc0037970.1_g000001 Rmu_sc0037970.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249520 Rroxscaffold_3G00249530 Rroxscaffold_3G00249550 Rroxscaffold_3G00249560 Rroxscaffold_3G00249580
rosa_rugosa	Rorug07G0111000 Rorug07G0111100 Rorug07G0111300 Rorug07G0111400
rosa_samantha	Rh7AG245300 Rh7AG245400 Rh7BG240100 Rh7BG240200 Rh7BG240400 Rh7BG240500 Rh7CG260400 Rh7CG260600 Rh7CG260700 Rh7CG260800 Rh7DG251700 Rh7DG251800
rosa_wichuraiana	Rw7G020770 Rw7G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	401
AccII	CGCG	2 cut(s)	356, 732
AccIII	TCCGGA	1 cut(s)	266
AciI	CCGC	8 cut(s)	78, 288, 354, 399, 543, 654, 753, 977
AclI	AACGTT	1 cut(s)	891
AclWI	GGATC	4 cut(s)	250, 653, 744, 830
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	536
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	4 cut(s)	81, 98, 105, 713
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	5 cut(s)	320, 527, 637, 695, 889
AjnI	CCWGG	3 cut(s)	85, 361, 499
AloI	GAACNNNNNNTCC	2 cut(s)	277, 309
AluBI	AGCT	5 cut(s)	140, 272, 346, 691, 947
AluI	AGCT	5 cut(s)	140, 272, 346, 691, 947
Alw26I	GTCTC	3 cut(s)	53, 137, 376
AlwI	GGATC	4 cut(s)	250, 653, 744, 830
Aor13HI	TCCGGA	1 cut(s)	266
AoxI	GGCC	2 cut(s)	67, 83
ApeKI	GCWGC	2 cut(s)	343, 688
ApoI	RAATTY	1 cut(s)	536
ArsI	GACNNNNNNTTYG	2 cut(s)	688, 720
AseI	ATTAAT	1 cut(s)	29
AspLEI	GCGC	2 cut(s)	688, 732
AspS9I	GGNCC	4 cut(s)	89, 293, 503, 831
AsuC2I	CCSGG	1 cut(s)	201
AsuII	TTCGAA	1 cut(s)	482
AvaII	GGWCC	4 cut(s)	89, 293, 503, 831
BalI	TGGCCA	1 cut(s)	69
BauI	CACGAG	2 cut(s)	402, 561
BbvI	GCAGC	2 cut(s)	355, 700
BccI	CCATC	3 cut(s)	455, 674, 862
BceAI	ACGGC	4 cut(s)	146, 506, 730, 777
BciT130I	CCWGG	3 cut(s)	87, 363, 501
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	3 cut(s)	53, 137, 376
BfaI	CTAG	4 cut(s)	105, 135, 846, 876
BisI	GCNGC	4 cut(s)	344, 354, 399, 689
BlsI	GCNGC	4 cut(s)	345, 355, 400, 690
Bme1390I	CCNGG	4 cut(s)	87, 201, 363, 501
Bme18I	GGWCC	4 cut(s)	89, 293, 503, 831
BmgT120I	GGNCC	4 cut(s)	89, 293, 503, 831
BmiI	GGNNCC	2 cut(s)	505, 873
BmrFI	CCNGG	4 cut(s)	87, 201, 363, 501
BoxI	GACNNNNGTC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	788
Bpu14I	TTCGAA	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	129
BsaJI	CCNNGG	5 cut(s)	238, 310, 499, 546, 793
BsaWI	WCCGGW	4 cut(s)	266, 644, 746, 941
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 98, 105, 713
Bse118I	RCCGGY	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	266
BseBI	CCWGG	3 cut(s)	87, 363, 501
BseDI	CCNNGG	5 cut(s)	238, 310, 499, 546, 793
BseGI	GGATG	1 cut(s)	614
BseLI	CCNNNNNNNGG	4 cut(s)	81, 98, 105, 713
BseMII	CTCAG	2 cut(s)	132, 200
BseXI	GCAGC	2 cut(s)	355, 700
Bsh1236I	CGCG	2 cut(s)	356, 732
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	69, 85
BsiEI	CGRYCG	1 cut(s)	597
BsiSI	CCGG	7 cut(s)	99, 201, 267, 291, 645, 747, 942
BslFI	GGGAC	5 cut(s)	465, 489, 564, 690, 779
BslI	CCNNNNNNNGG	4 cut(s)	81, 98, 105, 713
BsmAI	GTCTC	3 cut(s)	53, 137, 376
BsmFI	GGGAC	5 cut(s)	465, 489, 564, 690, 779
BsmI	GAATGC	3 cut(s)	172, 219, 490
BsnI	GGCC	2 cut(s)	69, 85
Bsp119I	TTCGAA	1 cut(s)	482
Bsp13I	TCCGGA	1 cut(s)	266
Bsp143I	GATC	8 cut(s)	14, 255, 565, 594, 658, 736, 817, 835
BspACI	CCGC	8 cut(s)	78, 288, 354, 399, 543, 654, 753, 977
BspANI	GGCC	2 cut(s)	69, 85
BspCNI	CTCAG	2 cut(s)	133, 201
BspEI	TCCGGA	1 cut(s)	266
BspFNI	CGCG	2 cut(s)	356, 732
BspLI	GGNNCC	2 cut(s)	505, 873
BspPI	GGATC	4 cut(s)	250, 653, 744, 830
BspT104I	TTCGAA	1 cut(s)	482
BsrBI	CCGCTC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	5 cut(s)	238, 310, 499, 546, 793
BssMI	GATC	8 cut(s)	14, 255, 565, 594, 658, 736, 817, 835
BssSI	CACGAG	2 cut(s)	402, 561
BssT1I	CCWWGG	3 cut(s)	238, 310, 546
Bst2BI	CACGAG	2 cut(s)	402, 561
Bst2UI	CCWGG	3 cut(s)	87, 363, 501
Bst4CI	ACNGT	4 cut(s)	230, 251, 412, 722
BstBAI	YACGTR	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	437
BstDEI	CTNAG	3 cut(s)	141, 209, 788
BstDSI	CCRYGG	1 cut(s)	793
BstEII	GGTNACC	1 cut(s)	937
BstF5I	GGATG	1 cut(s)	614
BstFNI	CGCG	2 cut(s)	356, 732
BstHHI	GCGC	2 cut(s)	688, 732
BstKTI	GATC	8 cut(s)	17, 258, 568, 597, 661, 739, 820, 838
BstMAI	GTCTC	3 cut(s)	53, 137, 376
BstMBI	GATC	8 cut(s)	14, 255, 565, 594, 658, 736, 817, 835
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 398, 485
BstNI	CCWGG	3 cut(s)	87, 363, 501
BstPAI	GACNNNNGTC	1 cut(s)	149
BstPI	GGTNACC	1 cut(s)	937
BstSCI	CCNGG	4 cut(s)	85, 199, 361, 499
BstUI	CGCG	2 cut(s)	356, 732
BstV1I	GCAGC	2 cut(s)	355, 700
BstX2I	RGATCY	2 cut(s)	658, 736
BstYI	RGATCY	2 cut(s)	658, 736
BsuRI	GGCC	2 cut(s)	69, 85
BtgI	CCRYGG	1 cut(s)	793
BtsCI	GGATG	1 cut(s)	614
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	1 cut(s)	437
CfoI	GCGC	2 cut(s)	688, 732
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	4 cut(s)	89, 293, 503, 831
CpoI	CGGWCCG	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	443
CspI	CGGWCCG	1 cut(s)	293
CviAII	CATG	1 cut(s)	65
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	3 cut(s)	141, 209, 788
DpnI	GATC	8 cut(s)	16, 257, 567, 596, 660, 738, 819, 837
DpnII	GATC	8 cut(s)	14, 255, 565, 594, 658, 736, 817, 835
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	532
Eco130I	CCWWGG	3 cut(s)	238, 310, 546
Eco147I	AGGCCT	1 cut(s)	85
Eco47I	GGWCC	4 cut(s)	89, 293, 503, 831
Eco91I	GGTNACC	1 cut(s)	937
EcoO65I	GGTNACC	1 cut(s)	937
EcoRII	CCWGG	3 cut(s)	85, 361, 499
EcoT14I	CCWWGG	3 cut(s)	238, 310, 546
EcoT22I	ATGCAT	1 cut(s)	219
ErhI	CCWWGG	3 cut(s)	238, 310, 546
FaeI	CATG	1 cut(s)	68
FaiI	YATR	4 cut(s)	66, 263, 326, 854
FaqI	GGGAC	5 cut(s)	465, 489, 564, 690, 779
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	344, 354, 399, 689
FokI	GGATG	1 cut(s)	621
Fsp4HI	GCNGC	4 cut(s)	344, 354, 399, 689
FspBI	CTAG	4 cut(s)	105, 135, 846, 876
GlaI	GCGC	2 cut(s)	687, 731
GluI	GCNGC	4 cut(s)	344, 354, 399, 689
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	69, 85
HapII	CCGG	7 cut(s)	99, 201, 267, 291, 645, 747, 942
HhaI	GCGC	2 cut(s)	688, 732
Hin1II	CATG	1 cut(s)	68
Hin6I	GCGC	2 cut(s)	686, 730
HinP1I	GCGC	2 cut(s)	686, 730
HinfI	GANTC	3 cut(s)	192, 512, 552
HpaII	CCGG	7 cut(s)	99, 201, 267, 291, 645, 747, 942
Hpy188I	TCNGA	7 cut(s)	155, 184, 297, 584, 599, 817, 917
Hpy188III	TCNNGA	5 cut(s)	267, 404, 563, 622, 740
Hpy99I	CGWCG	3 cut(s)	575, 584, 722
HpyAV	CCTTC	2 cut(s)	46, 895
HpyCH4III	ACNGT	4 cut(s)	230, 251, 412, 722
HpyCH4IV	ACGT	3 cut(s)	128, 454, 891
HpyCH4V	TGCA	2 cut(s)	217, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 398, 485
HpyF3I	CTNAG	3 cut(s)	141, 209, 788
HpySE526I	ACGT	3 cut(s)	128, 454, 891
Hsp92II	CATG	1 cut(s)	68
HspAI	GCGC	2 cut(s)	686, 730
Kpn2I	TCCGGA	1 cut(s)	266
Kzo9I	GATC	8 cut(s)	14, 255, 565, 594, 658, 736, 817, 835
LmnI	GCTCC	3 cut(s)	269, 877, 944
Lsp1109I	GCAGC	2 cut(s)	355, 700
MaeI	CTAG	4 cut(s)	105, 135, 846, 876
MaeII	ACGT	3 cut(s)	128, 454, 891
MaeIII	GTNAC	4 cut(s)	245, 404, 509, 937
MalI	GATC	8 cut(s)	16, 257, 567, 596, 660, 738, 819, 837
MbiI	CCGCTC	1 cut(s)	401
MboI	GATC	8 cut(s)	14, 255, 565, 594, 658, 736, 817, 835
MfeI	CAATTG	1 cut(s)	863
MflI	RGATCY	2 cut(s)	658, 736
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	4 cut(s)	43, 536, 863, 982
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	506, 546
MmeI	TCCRAC	2 cut(s)	562, 686
MnlI	CCTC	4 cut(s)	311, 578, 587, 897
Mox20I	TGGCCA	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	219
MroI	TCCGGA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	5 cut(s)	29, 42, 122, 981, 985
Msp20I	TGGCCA	1 cut(s)	69
MspI	CCGG	7 cut(s)	99, 201, 267, 291, 645, 747, 942
MspR9I	CCNGG	4 cut(s)	87, 201, 363, 501
MunI	CAATTG	1 cut(s)	863
Mva1269I	GAATGC	3 cut(s)	172, 219, 490
MvaI	CCWGG	3 cut(s)	87, 363, 501
MvnI	CGCG	2 cut(s)	356, 732
MwoI	GCNNNNNNNGC	3 cut(s)	167, 398, 485
NciI	CCSGG	1 cut(s)	201
NdeII	GATC	8 cut(s)	14, 255, 565, 594, 658, 736, 817, 835
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	505, 873
NmuCI	GTSAC	3 cut(s)	245, 404, 509
NsiI	ATGCAT	1 cut(s)	219
NspV	TTCGAA	1 cut(s)	482
PacI	TTAATTAA	1 cut(s)	985
PceI	AGGCCT	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	576
PctI	GAATGC	3 cut(s)	172, 219, 490
PfeI	GAWTC	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	4 cut(s)	345, 355, 400, 690
Ple19I	CGATCG	1 cut(s)	597
PleI	GAGTC	2 cut(s)	506, 546
PpsI	GAGTC	2 cut(s)	506, 546
Ppu21I	YACGTR	1 cut(s)	129
PshAI	GACNNNNGTC	1 cut(s)	149
PshBI	ATTAAT	1 cut(s)	29
Psp1406I	AACGTT	1 cut(s)	891
Psp6I	CCWGG	3 cut(s)	85, 361, 499
PspEI	GGTNACC	1 cut(s)	937
PspGI	CCWGG	3 cut(s)	85, 361, 499
PspN4I	GGNNCC	2 cut(s)	505, 873
PspPI	GGNCC	4 cut(s)	89, 293, 503, 831
PsuI	RGATCY	2 cut(s)	658, 736
PsyI	GACNNNGTC	1 cut(s)	410
PvuI	CGATCG	1 cut(s)	597
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
Rsr2I	CGGWCCG	1 cut(s)	293
RsrII	CGGWCCG	1 cut(s)	293
SaqAI	TTAA	5 cut(s)	29, 42, 122, 981, 985
SatI	GCNGC	4 cut(s)	344, 354, 399, 689
Sau3AI	GATC	8 cut(s)	14, 255, 565, 594, 658, 736, 817, 835
Sau96I	GGNCC	4 cut(s)	89, 293, 503, 831
SchI	GAGTC	2 cut(s)	506, 546
ScrFI	CCNGG	4 cut(s)	87, 201, 363, 501
SfuI	TTCGAA	1 cut(s)	482
SinI	GGWCC	4 cut(s)	89, 293, 503, 831
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	4 cut(s)	43, 536, 863, 982
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	8 cut(s)	78, 288, 354, 399, 543, 654, 753, 977
SspMI	CTAG	4 cut(s)	105, 135, 846, 876
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	4 cut(s)	85, 199, 361, 499
StyI	CCWWGG	3 cut(s)	238, 310, 546
TaaI	ACNGT	4 cut(s)	230, 251, 412, 722
TaiI	ACGT	3 cut(s)	131, 457, 894
TaqI	TCGA	5 cut(s)	254, 348, 482, 669, 741
TaqII	GACCGA	1 cut(s)	848
TasI	AATT	4 cut(s)	43, 536, 863, 982
TauI	GCSGC	2 cut(s)	356, 401
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	5 cut(s)	29, 42, 122, 981, 985
Tru9I	TTAA	5 cut(s)	29, 42, 122, 981, 985
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	3 cut(s)	245, 404, 509
TseI	GCWGC	2 cut(s)	343, 688
Tsp45I	GTSAC	3 cut(s)	245, 404, 509
TspDTI	ATGAA	1 cut(s)	53
TspGWI	ACGGA	2 cut(s)	505, 950
TspRI	CASTG	1 cut(s)	732
Tth111I	GACNNNGTC	1 cut(s)	410
VpaK11BI	GGWCC	4 cut(s)	89, 293, 503, 831
VspI	ATTAAT	1 cut(s)	29
XapI	RAATTY	1 cut(s)	536
XspI	CTAG	4 cut(s)	105, 135, 846, 876
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.