Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001725

Physical Location & Seq

Genomic Coordinates Reverse (-)

18662805 .. 18664908

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGAAGAGGCAAGTTCAAGGGTAAACCTACCGGCCAACGCCGATTCTCTAGTGCTGCTGATATTCTTGCTGGCACATCTGCTGCACGTCCTCGATCATTCAAACAGAAAGAAGCTGAGTACGAAGAAGATGTTGAAGAAGAGTCAGAGGAGGAATCTGAAGAAGAATCCGAAGATGAAGCTGATGTGAAGAAGAAAGGAGCTGAAGCTGTTATCGAAGTTGATAACCCTAACAGAGTAAGACAAAAGACCTTGAAAGCAAAAGACCTCGATGCTAGTAAAACCACTGAACTCTCAAGGCGTGAAAGAGAGGAGCTAGAGAAGCAGCGAGCTCATGAGCGATACATGAGGTTGCAAGAGCAAGGCAAAACCGAACAAGCAAGGAAGGACTTGGATCGTTTGGCTCTGATTCGCCAACAGAGAGAAGAAGCTGCCAAGAAGCGAGAAGAGGAAAAAGCCGCAAGAGACGCTAAGAAAGTCGAAGGGCGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP28

Protein Analysis

164

Amino Acids

18.98

Weight (kDa)

6.71

Isoelectric Point (pI)

64.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP28	PF10252	76 - 153	4.8e-29	Casein kinase substrate phosphoprotein PP28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46020
fragaria_vesca	FvH4_3g08340 FvH4_3g19100 FvH4_7g03420
malus_domestica	MD03G1236800.v1.1 MD05G1307600.v1.1 MD10G1286800.v1.1 MD11G1257500.v1.1
prunus_persica	Prupe.4G054900_v2.0.a1 Prupe.4G172600_v2.0.a1 Prupe.4G172600_v2.0.a1
pyrus_communis	pycom03g18270 pycom05g28430 pycom10g23990 pycom10g24000
rosa_chinensis	RchiOBHm_Chr1g0325741 RchiOBHm_Chr5g0009661 RchiOBHm_Chr5g0031891
rosa_laevigata	RLG00000030109 RLG00000033356
rosa_multiflora	Rmu_sc0000164.1_g000007 Rmu_sc0000703.1_g000006 Rmu_sc0004624.1_g000005 Rmu_sc0005375.1_g000028 Rmu_sc0006311.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048370 Rroxscaffold_1G00066550 Rroxscaffold_4G00324430
rosa_rugosa	Rorug01G0054200 Rorug04G0444600 Rorug05G0128600 Rorug05G0128700 Rorug05G0128800
rosa_samantha	Rh1AG069800 Rh1BG057200 Rh1CG070300 Rh1DG074900 Rh5AG076200 Rh5AG222900 Rh5BG071300 Rh5BG223000 Rh5CG083900 Rh5CG246200 Rh5DG071900 Rh5DG227900
rosa_wichuraiana	Rw1G005770 Rw5G007010 Rw5G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	459
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	180, 225
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	4 cut(s)	19, 103, 137, 256
AjiI	CACGTC	1 cut(s)	89
AluBI	AGCT	7 cut(s)	116, 182, 203, 209, 316, 332, 431
AluI	AGCT	7 cut(s)	116, 182, 203, 209, 316, 332, 431
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	4 cut(s)	56, 83, 325, 431
AspLEI	GCGC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	4 cut(s)	43, 70, 337, 418
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	3 cut(s)	51, 276, 317
BisI	GCNGC	5 cut(s)	57, 84, 326, 432, 459
BlsI	GCNGC	5 cut(s)	58, 85, 327, 433, 460
BmgBI	CACGTC	1 cut(s)	89
BmsI	GCATC	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	108
BseRI	GAGGAG	2 cut(s)	164, 326
BseXI	GCAGC	4 cut(s)	43, 70, 337, 418
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	459
BsmBI	CGTCTC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	95, 394
BspACI	CCGC	1 cut(s)	459
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	334
BspPI	GGATC	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	2 cut(s)	95, 394
Bst6I	CTCTTC	2 cut(s)	135, 441
BstC8I	GCNNGC	2 cut(s)	73, 330
BstDEI	CTNAG	2 cut(s)	117, 471
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	2 cut(s)	98, 397
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	2 cut(s)	95, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 467
BstV1I	GCAGC	4 cut(s)	43, 70, 337, 418
BsuRI	GGCC	1 cut(s)	36
BtrI	CACGTC	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	73, 330
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	489
Cfr10I	RCCGGY	1 cut(s)	32
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	335, 346
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	117, 471
DpnI	GATC	2 cut(s)	97, 396
DpnII	GATC	2 cut(s)	95, 394
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	135, 441
EarI	CTCTTC	2 cut(s)	135, 441
Ecl136II	GAGCTC	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	180, 225
EcoICRI	GAGCTC	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	459
FaeI	CATG	2 cut(s)	338, 349
FaiI	YATR	2 cut(s)	336, 347
FatI	CATG	2 cut(s)	334, 345
Fnu4HI	GCNGC	5 cut(s)	57, 84, 326, 432, 459
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	5 cut(s)	57, 84, 326, 432, 459
FspBI	CTAG	3 cut(s)	51, 276, 317
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	5 cut(s)	57, 84, 326, 432, 459
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	2 cut(s)	338, 349
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HinfI	GANTC	5 cut(s)	45, 143, 155, 167, 409
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	4 cut(s)	148, 160, 172, 408
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	379, 476
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	86, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 467
HpyF3I	CTNAG	2 cut(s)	117, 471
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	338, 349
HspAI	GCGC	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	95, 394
LmnI	GCTCC	2 cut(s)	200, 313
LpnPI	CCDG	2 cut(s)	46, 57
Lsp1109I	GCAGC	4 cut(s)	43, 70, 337, 418
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	3 cut(s)	51, 276, 317
MaeII	ACGT	1 cut(s)	88
MalI	GATC	2 cut(s)	97, 396
MboI	GATC	2 cut(s)	95, 394
MhlI	GDGCHC	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	7 cut(s)	102, 142, 145, 278, 304, 342, 442
MspI	CCGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	322, 467
NdeII	GATC	2 cut(s)	95, 394
NlaIII	CATG	2 cut(s)	338, 349
PagI	TCATGA	1 cut(s)	334
PfeI	GAWTC	4 cut(s)	45, 155, 167, 409
PkrI	GCNGC	5 cut(s)	58, 85, 327, 433, 460
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	334
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	334
SatI	GCNGC	5 cut(s)	57, 84, 326, 432, 459
Sau3AI	GATC	2 cut(s)	95, 394
SchI	GAGTC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
SsiI	CCGC	1 cut(s)	459
SspMI	CTAG	3 cut(s)	51, 276, 317
SstI	GAGCTC	1 cut(s)	334
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	4 cut(s)	94, 216, 270, 480
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	4 cut(s)	45, 155, 167, 409
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	4 cut(s)	56, 83, 325, 431
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	292
XspI	CTAG	3 cut(s)	51, 276, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.