MD11G1257500.v1.1

28 kDa heat- and acid-stable phosphoprotein-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
36972744 .. 36978475
5732 bp
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UTR
Exon/CDS
Intron
MD11G1257500.v1.1.491

Sequence Viewer

Length: 471 bp
ATGGGAAGAGGAAAGTTCAAGGGCAAGCCCACCGGCCACCGCCACTTCTCCACTCACGAAGAGATGGTTGCCGGTAGCTCTGCTCGTCCGCGTAGTTTTAAAAGGGAAGAAGCCGAAGAGGAGGAGTCTGAAGAGGAATCAGAAGAAGAACAGGAAGAATCCGAAAAACGGAAAGGCACTCAGGGAATCATTGAAATTGAGAATCCCAATCTAGTAAAACCAAAGAATGTGAAGGCTAAAAATGTCGACATTGAGAAAACGACTGAACTCTCAAGGCGTGAAAGAGAGGAGATCGAGAAGCAAAAGGCTCATGAGCGGTACATGAGGTTGCAGGAACAGGGAAAAACGGAACAAGCAAAAAAGGATTTAGAACGCTTAGCCATGATTCGCCAACAAAGGGCTGAGGCCGCTAAGAAGCGAGAGGAAGAAAAGGCTGCTAAAGAGCAGAAAAAAGGCGAGGGACGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

18.26

Weight (kDa)

8.65

Isoelectric Point (pI)

81.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP28 PF10252 68 - 145 4.4e-29 Casein kinase substrate phosphoprotein PP28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 316
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 91
AciI CCGC 4 cut(s) 40, 89, 316, 408
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 168, 397
AgsI TTSAA 2 cut(s) 19, 194
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
AoxI GGCC 2 cut(s) 34, 405
ApeKI GCWGC 1 cut(s) 434
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 421
BccI CCATC 1 cut(s) 58
BfaI CTAG 1 cut(s) 212
BisI GCNGC 2 cut(s) 408, 435
BlpI GCTNAGC 1 cut(s) 376
BlsI GCNGC 2 cut(s) 409, 436
Bpu10I CCTNAGC 1 cut(s) 402
Bpu1102I GCTNAGC 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 397
Bse118I RCCGGY 2 cut(s) 32, 71
BseLI CCNNNNNNNGG 2 cut(s) 168, 397
BseMII CTCAG 2 cut(s) 194, 393
BseRI GAGGAG 3 cut(s) 134, 137, 302
BseXI GCAGC 1 cut(s) 421
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 2 cut(s) 36, 407
BsiSI CCGG 2 cut(s) 33, 72
BslI CCNNNNNNNGG 2 cut(s) 168, 397
BsnI GGCC 2 cut(s) 36, 407
Bsp143I GATC 1 cut(s) 291
Bsp1720I GCTNAGC 1 cut(s) 376
BspACI CCGC 4 cut(s) 40, 89, 316, 408
BspANI GGCC 2 cut(s) 36, 407
BspCNI CTCAG 2 cut(s) 193, 394
BspFNI CGCG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 310
BsrBI CCGCTC 1 cut(s) 316
BsrFI RCCGGY 2 cut(s) 32, 71
BssAI RCCGGY 2 cut(s) 32, 71
BssMI GATC 1 cut(s) 291
Bst6I CTCTTC 3 cut(s) 54, 111, 126
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 4 cut(s) 180, 376, 402, 411
BstFNI CGCG 1 cut(s) 91
BstKTI GATC 1 cut(s) 294
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 2 cut(s) 407, 462
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 421
BsuRI GGCC 2 cut(s) 36, 407
Cac8I GCNNGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 310
Cfr10I RCCGGY 2 cut(s) 32, 71
Csp6I GTAC 1 cut(s) 319
CviAII CATG 3 cut(s) 311, 322, 382
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 4 cut(s) 180, 376, 402, 411
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
DraI TTTAAA 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 3 cut(s) 54, 111, 126
EarI CTCTTC 3 cut(s) 54, 111, 126
Eco57I CTGAAG 1 cut(s) 150
FaeI CATG 3 cut(s) 314, 325, 385
FaiI YATR 3 cut(s) 312, 323, 383
FatI CATG 3 cut(s) 310, 321, 381
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 408, 435
Fsp4HI GCNGC 2 cut(s) 408, 435
FspBI CTAG 1 cut(s) 212
GluI GCNGC 2 cut(s) 408, 435
HaeIII GGCC 2 cut(s) 36, 407
HapII CCGG 2 cut(s) 33, 72
Hin1II CATG 3 cut(s) 314, 325, 385
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 6 cut(s) 125, 137, 158, 186, 202, 385
HpaII CCGG 2 cut(s) 33, 72
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 130, 142, 163
Hpy188III TCNNGA 3 cut(s) 56, 295, 311
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 462
HpyF3I CTNAG 4 cut(s) 180, 376, 402, 411
Hsp92II CATG 3 cut(s) 314, 325, 385
Kzo9I GATC 1 cut(s) 291
LpnPI CCDG 6 cut(s) 46, 85, 137, 167, 317, 323
Lsp1109I GCAGC 1 cut(s) 421
MaeI CTAG 1 cut(s) 212
MalI GATC 1 cut(s) 293
MbiI CCGCTC 1 cut(s) 316
MboI GATC 1 cut(s) 291
MboII GAAGA 9 cut(s) 18, 71, 119, 128, 143, 155, 158, 167, 437
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 8 cut(s) 112, 115, 127, 280, 318, 397, 415, 451
MseI TTAA 1 cut(s) 99
MspI CCGG 2 cut(s) 33, 72
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 407, 462
NdeII GATC 1 cut(s) 291
NlaIII CATG 3 cut(s) 314, 325, 385
PagI TCATGA 1 cut(s) 310
PfeI GAWTC 5 cut(s) 137, 158, 186, 202, 385
PkrI GCNGC 2 cut(s) 409, 436
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SalI GTCGAC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 2 cut(s) 408, 435
Sau3AI GATC 1 cut(s) 291
SchI GAGTC 1 cut(s) 134
SetI ASST 2 cut(s) 80, 329
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 1 cut(s) 195
SsiI CCGC 4 cut(s) 40, 89, 316, 408
SspMI CTAG 1 cut(s) 212
TaqI TCGA 2 cut(s) 246, 294
TasI AATT 1 cut(s) 195
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 5 cut(s) 137, 158, 186, 202, 385
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseI GCWGC 1 cut(s) 434
TspGWI ACGGA 2 cut(s) 184, 362
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.