Rroxscaffold_4G00324430

28 kDa heat- and acid-stable

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
55866696 .. 55867647
952 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00324430.1

Sequence Viewer

Length: 441 bp
ATGGTTCCCTTTGCGATGATGGCACCAGAAGCTGAACATTATGAAGCCGATGAAGTAGAATTTGCAGAAGGATCAGAAGAGGAGCCGTTGAGTGAAGAAGAATCTGAAAACAAGAAAAGCAAAGGCGTTGAAGGCATTATTGAGATTCAAAATCCTAATTTGGTAAAGCAGAAGAAGGCGTTGAAAGCTAGAGACATTGACATTGGAAAAACAACTGAACTGTCAAGGCGTGAAAGAGAAGAAATAGAGAAAGAGAGAAGCCATGAGAGATATATGAAGCAGCAGGAACAGGGAAAGACTGAACAAGCAAGGAAAGATTTAGAGCGCCTAGCGCTTATACGACAACAAAGGGAGGGGGCTGCTAAGAAGCGAGAAGAAGAAAAAGCAGCCAAAGTACAGAAGAAGATGGTTCAACCCCGCAAACCATTACCTAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

17.03

Weight (kDa)

6.8

Isoelectric Point (pI)

75.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP28 PF10252 51 - 129 1.2e-27 Casein kinase substrate phosphoprotein PP28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AciI CCGC 1 cut(s) 418
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 1 cut(s) 396
AfeI AGCGCT 1 cut(s) 333
AgsI TTSAA 4 cut(s) 131, 149, 184, 413
AluBI AGCT 2 cut(s) 32, 188
AluI AGCT 2 cut(s) 32, 188
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 79
AlwNI CAGNNNCTG 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 333
ApeKI GCWGC 3 cut(s) 280, 359, 386
ApoI RAATTY 1 cut(s) 59
AspLEI GCGC 2 cut(s) 327, 334
BanI GGYRCC 1 cut(s) 22
BbvI GCAGC 3 cut(s) 292, 346, 398
BccI CCATC 2 cut(s) 13, 400
BceAI ACGGC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 2 cut(s) 189, 329
BfoI RGCGCY 2 cut(s) 328, 335
BisI GCNGC 3 cut(s) 281, 360, 387
BlsI GCNGC 3 cut(s) 282, 361, 388
BmiI GGNNCC 3 cut(s) 6, 24, 84
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 3 cut(s) 292, 346, 398
BshNI GGYRCC 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 71
BspACI CCGC 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 6, 24, 84
BspPI GGATC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 22
BssMI GATC 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 363, 432
BstH2I RGCGCY 2 cut(s) 328, 335
BstHHI GCGC 2 cut(s) 327, 334
BstKTI GATC 1 cut(s) 74
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 5 cut(s) 20, 29, 132, 185, 331
BstV1I GCAGC 3 cut(s) 292, 346, 398
BtgZI GCGATG 1 cut(s) 29
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 2 cut(s) 327, 334
Csp6I GTAC 1 cut(s) 395
CviAII CATG 1 cut(s) 263
CviJI RGCY 7 cut(s) 32, 47, 85, 188, 261, 359, 389
CviKI_1 RGCY 7 cut(s) 32, 47, 85, 188, 261, 359, 389
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 2 cut(s) 363, 432
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco47III AGCGCT 1 cut(s) 333
FaeI CATG 1 cut(s) 266
FaiI YATR 5 cut(s) 42, 264, 273, 275, 338
FatI CATG 1 cut(s) 262
FauI CCCGC 1 cut(s) 425
Fnu4HI GCNGC 3 cut(s) 281, 360, 387
Fsp4HI GCNGC 3 cut(s) 281, 360, 387
FspBI CTAG 2 cut(s) 189, 329
GlaI GCGC 2 cut(s) 326, 333
GluI GCNGC 3 cut(s) 281, 360, 387
HaeII RGCGCY 2 cut(s) 328, 335
HhaI GCGC 2 cut(s) 327, 334
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 2 cut(s) 325, 332
HinP1I GCGC 2 cut(s) 325, 332
HinfI GANTC 2 cut(s) 101, 145
Hpy188I TCNGA 2 cut(s) 76, 106
HpyAV CCTTC 3 cut(s) 62, 125, 169
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 29, 132, 185, 331
HpyF3I CTNAG 2 cut(s) 363, 432
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 2 cut(s) 325, 332
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 3 cut(s) 39, 269, 275
Lsp1109I GCAGC 3 cut(s) 292, 346, 398
MaeI CTAG 2 cut(s) 189, 329
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 9 cut(s) 89, 107, 110, 184, 251, 386, 389, 412, 415
MluCI AATT 2 cut(s) 59, 157
MnlI CCTC 2 cut(s) 73, 346
MwoI GCNNNNNNNGC 5 cut(s) 20, 29, 132, 185, 331
NdeII GATC 1 cut(s) 71
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 3 cut(s) 6, 24, 84
PfeI GAWTC 2 cut(s) 101, 145
PkrI GCNGC 3 cut(s) 282, 361, 388
PspN4I GGNNCC 3 cut(s) 6, 24, 84
PstNI CAGNNNCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
SatI GCNGC 3 cut(s) 281, 360, 387
Sau3AI GATC 1 cut(s) 71
SetI ASST 3 cut(s) 34, 190, 433
Sse9I AATT 2 cut(s) 59, 157
SsiI CCGC 1 cut(s) 418
SspMI CTAG 2 cut(s) 189, 329
TaaI ACNGT 1 cut(s) 222
TasI AATT 2 cut(s) 59, 157
TatI WGTACW 1 cut(s) 394
TfiI GAWTC 2 cut(s) 101, 145
TseI GCWGC 3 cut(s) 280, 359, 386
TspDTI ATGAA 3 cut(s) 57, 66, 290
XapI RAATTY 1 cut(s) 59
XspI CTAG 2 cut(s) 189, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.