Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001725

Physical Location & Seq

Genomic Coordinates Forward (+)

7262280 .. 7264549

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGCAGAGGAAAGTACAAGAACAAGCCCACTGGTCAGCGCCAGTTCTCCAGTCGCGAAGATCTTCTTGCCGGTACCTCCACCCGTCCCCGTTCTTTTTCAAAGCGAGAAGCTGAACATGAGGAAGAACCGGAAGAGGATTTTGTATCCTTCGAAGATGGGTCTGATGGACAAGATGAAAAGAAGAAAGGCGTTCAAGGTATAATCGAGATTGAAAATCCTAATTTGGTAAAACCGAAGACCTTGAAAGCTAAAGACATCGATATTGGAAAACCTACTGAACTCTCACGGCGTGAAAGGGAAGAACTAGAGAAGCAAAGAGCCCGTGAGAGATATATGAAGTTGCAAGAACAGGGGAAAACTGAACAAGCAAGGAAAGATTTAGAGCGTTTGGCGCTTATACGACAACAGAGGGAGGAAGCTGCTAAAAAGCGAGAAGAAGAAAAAAATGCTAAAGAACAGAAGAAGGCTGAATCCCGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP28

Protein Analysis

161

Amino Acids

18.86

Weight (kDa)

9.28

Isoelectric Point (pI)

64.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP28	PF10252	73 - 150	1.4e-30	Casein kinase substrate phosphoprotein PP28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46020
fragaria_vesca	FvH4_3g08340 FvH4_3g19100 FvH4_7g03420
malus_domestica	MD03G1236800.v1.1 MD05G1307600.v1.1 MD10G1286800.v1.1 MD11G1257500.v1.1
prunus_persica	Prupe.4G054900_v2.0.a1 Prupe.4G172600_v2.0.a1 Prupe.4G172600_v2.0.a1
pyrus_communis	pycom03g18270 pycom05g28430 pycom10g23990 pycom10g24000
rosa_chinensis	RchiOBHm_Chr1g0325741 RchiOBHm_Chr5g0009661 RchiOBHm_Chr5g0031891
rosa_laevigata	RLG00000030109 RLG00000033356
rosa_multiflora	Rmu_sc0000164.1_g000007 Rmu_sc0000703.1_g000006 Rmu_sc0004624.1_g000005 Rmu_sc0005375.1_g000028 Rmu_sc0006311.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048370 Rroxscaffold_1G00066550 Rroxscaffold_4G00324430
rosa_rugosa	Rorug01G0054200 Rorug04G0444600 Rorug05G0128600 Rorug05G0128700 Rorug05G0128800
rosa_samantha	Rh1AG069800 Rh1BG057200 Rh1CG070300 Rh1DG074900 Rh5AG076200 Rh5AG222900 Rh5BG071300 Rh5BG223000 Rh5CG083900 Rh5CG246200 Rh5DG071900 Rh5DG227900
rosa_wichuraiana	Rw1G005770 Rw5G007010 Rw5G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	478
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	2 cut(s)	17, 76
AgsI	TTSAA	4 cut(s)	102, 197, 215, 247
AluBI	AGCT	3 cut(s)	113, 251, 422
AluI	AGCT	3 cut(s)	113, 251, 422
ApeKI	GCWGC	1 cut(s)	422
Asp700I	GAANNNNTTC	1 cut(s)	63
Asp718I	GGTACC	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	42, 397
AsuII	TTCGAA	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	152, 161
BceAI	ACGGC	1 cut(s)	305
BciVI	GTATCC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	308
BfoI	RGCGCY	2 cut(s)	43, 398
BfuI	GTATCC	1 cut(s)	157
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	3 cut(s)	37, 43, 51
BseCI	ATCGAT	1 cut(s)	261
BseNI	ACTGG	3 cut(s)	37, 43, 51
BseXI	GCAGC	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	72, 131
BslFI	GGGAC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	61
Bsp68I	TCGCGA	1 cut(s)	57
BspACI	CCGC	1 cut(s)	478
BspDI	ATCGAT	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	3 cut(s)	37, 43, 51
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	2 cut(s)	43, 398
BstHHI	GCGC	2 cut(s)	42, 397
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	157
BsuTUI	ATCGAT	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	30
BtuMI	TCGCGA	1 cut(s)	57
CfoI	GCGC	2 cut(s)	42, 397
Cfr10I	RCCGGY	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	16, 75
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	6 cut(s)	28, 113, 251, 323, 422, 470
CviKI_1	RGCY	6 cut(s)	28, 113, 251, 323, 422, 470
CviQI	GTAC	2 cut(s)	16, 75
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
DraIII	CACNNNGTG	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	325
FaeI	CATG	1 cut(s)	122
FaiI	YATR	5 cut(s)	120, 203, 336, 338, 401
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	423
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	2 cut(s)	41, 396
GluI	GCNGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	34
HaeII	RGCGCY	2 cut(s)	43, 398
HapII	CCGG	2 cut(s)	72, 131
HhaI	GCGC	2 cut(s)	42, 397
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	2 cut(s)	40, 395
HinP1I	GCGC	2 cut(s)	40, 395
HinfI	GANTC	1 cut(s)	473
HpaII	CCGG	2 cut(s)	72, 131
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	56, 208
HpyAV	CCTTC	2 cut(s)	160, 460
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	2 cut(s)	40, 395
KpnI	GGTACC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	6 cut(s)	18, 56, 64, 85, 144, 338
Lsp1109I	GCAGC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	308
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	1 cut(s)	223
MnlI	CCTC	5 cut(s)	88, 115, 130, 405, 409
MroXI	GAANNNNTTC	1 cut(s)	63
MspI	CCGG	2 cut(s)	72, 131
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	394
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	76
NruI	TCGCGA	1 cut(s)	57
NspV	TTCGAA	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	61
RruI	TCGCGA	1 cut(s)	57
RsaI	GTAC	2 cut(s)	17, 76
RsaNI	GTAC	2 cut(s)	16, 75
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	7 cut(s)	80, 115, 202, 245, 253, 277, 424
SfuI	TTCGAA	1 cut(s)	153
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	478
SspMI	CTAG	1 cut(s)	308
TaqI	TCGA	3 cut(s)	153, 207, 261
TasI	AATT	1 cut(s)	223
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	473
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	192, 353
TspRI	CASTG	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.