Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001725

Physical Location & Seq

Genomic Coordinates Reverse (-)

26760138 .. 26764157

Gene Structure 4020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G020300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGAAGAGGAAAGTTCAAGGGCAAGCCCACCGGTCACCGCCACTTCTCCACTCACGAAGAGATGGTTGCTGGTACCTCTTCCCGTCCACGTAGCTTTAGAAGGGAAGAAGCTGAAGAGGAGGAAGAAGTAGAGTCTGAAGAGGAATCATCAGAAGAAGAAGAAGCAGAAAAGCGGAAGGGTACTCAGGGAATCATAGAAATTGAGAATCCCAATCTAGTAAAGCCAAAGAATGTGAAGGCTAAAAATGTCGATCTTGAGAAAACAACTGAACTTTCTAGGCGTGAAAGGGAGGAGATTGAAAAACAAAAGGCTCATGAGCGATACATGAGGTTGCAGGAGCAGGGAAAAACTGAACAAGCAAAGAAAGATTTAGAACGTTTAGCCATGATTCGCCAACAAAGGGCAGAGGCTGCTAAGAAGCGAGAAGAGGAGAAGGCTGCCAAGGAACAGAAAAAAGGCGAGGGACGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP28

Protein Analysis

158

Amino Acids

18.49

Weight (kDa)

7.89

Isoelectric Point (pI)

79.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP28	PF10252	70 - 147	4.7e-29	Casein kinase substrate phosphoprotein PP28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46020
fragaria_vesca	FvH4_3g08340 FvH4_3g19100 FvH4_7g03420
malus_domestica	MD03G1236800.v1.1 MD05G1307600.v1.1 MD10G1286800.v1.1 MD11G1257500.v1.1
prunus_persica	Prupe.4G054900_v2.0.a1 Prupe.4G172600_v2.0.a1 Prupe.4G172600_v2.0.a1
pyrus_communis	pycom03g18270 pycom05g28430 pycom10g23990 pycom10g24000
rosa_chinensis	RchiOBHm_Chr1g0325741 RchiOBHm_Chr5g0009661 RchiOBHm_Chr5g0031891
rosa_laevigata	RLG00000030109 RLG00000033356
rosa_multiflora	Rmu_sc0000164.1_g000007 Rmu_sc0000703.1_g000006 Rmu_sc0004624.1_g000005 Rmu_sc0005375.1_g000028 Rmu_sc0006311.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048370 Rroxscaffold_1G00066550 Rroxscaffold_4G00324430
rosa_rugosa	Rorug01G0054200 Rorug04G0444600 Rorug05G0128600 Rorug05G0128700 Rorug05G0128800
rosa_samantha	Rh1AG069800 Rh1BG057200 Rh1CG070300 Rh1DG074900 Rh5AG076200 Rh5AG222900 Rh5BG071300 Rh5BG223000 Rh5CG083900 Rh5CG246200 Rh5DG071900 Rh5DG227900
rosa_wichuraiana	Rw1G005770 Rw5G007010 Rw5G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AciI	CCGC	2 cut(s)	40, 175
AclI	AACGTT	1 cut(s)	379
AcuI	CTGAAG	2 cut(s)	135, 159
AfaI	GTAC	2 cut(s)	76, 184
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	19, 302
AluBI	AGCT	2 cut(s)	96, 113
AluI	AGCT	2 cut(s)	96, 113
AlwNI	CAGNNNCTG	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	413, 440
AsiGI	ACCGGT	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	400, 427
BccI	CCATC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	218, 279
BisI	GCNGC	2 cut(s)	414, 441
BlsI	GCNGC	2 cut(s)	415, 442
BmiI	GGNNCC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	278
BsaAI	YACGTR	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	200
BseRI	GAGGAG	3 cut(s)	134, 308, 446
BseXI	GCAGC	2 cut(s)	400, 427
BshNI	GGYRCC	1 cut(s)	74
BshTI	ACCGGT	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	403
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	2 cut(s)	40, 175
BspCNI	CTCAG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	444
Bst6I	CTCTTC	5 cut(s)	54, 85, 111, 135, 423
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	186, 417
BstEII	GGTNACC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 468
BstPI	GGTNACC	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	400, 427
Cac8I	GCNNGC	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	413
CciI	TCATGA	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	75, 183
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	3 cut(s)	317, 328, 388
CviJI	RGCY	9 cut(s)	28, 96, 113, 226, 242, 314, 386, 413, 440
CviKI_1	RGCY	9 cut(s)	28, 96, 113, 226, 242, 314, 386, 413, 440
CviQI	GTAC	2 cut(s)	75, 183
DdeI	CTNAG	2 cut(s)	186, 417
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	5 cut(s)	54, 85, 111, 135, 423
EarI	CTCTTC	5 cut(s)	54, 85, 111, 135, 423
Eco130I	CCWWGG	1 cut(s)	444
Eco57I	CTGAAG	2 cut(s)	135, 159
Eco91I	GGTNACC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	320, 331, 391
FaiI	YATR	4 cut(s)	197, 318, 329, 389
FatI	CATG	3 cut(s)	316, 327, 387
Fnu4HI	GCNGC	2 cut(s)	414, 441
Fsp4HI	GCNGC	2 cut(s)	414, 441
FspBI	CTAG	2 cut(s)	218, 279
GluI	GCNGC	2 cut(s)	414, 441
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	3 cut(s)	320, 331, 391
HinfI	GANTC	5 cut(s)	134, 146, 192, 208, 391
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	139, 154
Hpy188III	TCNNGA	3 cut(s)	56, 257, 317
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	96, 172, 232, 430
HpyCH4IV	ACGT	2 cut(s)	91, 379
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 468
HpyF3I	CTNAG	2 cut(s)	186, 417
HpySE526I	ACGT	2 cut(s)	91, 379
Hsp92II	CATG	3 cut(s)	320, 331, 391
KpnI	GGTACC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	5 cut(s)	46, 57, 173, 323, 329
Lsp1109I	GCAGC	2 cut(s)	400, 427
MaeI	CTAG	2 cut(s)	218, 279
MaeII	ACGT	2 cut(s)	91, 379
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MluCI	AATT	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	9 cut(s)	88, 112, 115, 136, 286, 324, 403, 424, 457
MspI	CCGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	413, 468
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	3 cut(s)	320, 331, 391
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	35
PagI	TCATGA	1 cut(s)	316
PfeI	GAWTC	4 cut(s)	146, 192, 208, 391
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	415, 442
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	379
PspEI	GGTNACC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	76, 184
RsaNI	GTAC	2 cut(s)	75, 183
SatI	GCNGC	2 cut(s)	414, 441
Sau3AI	GATC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	143
SetI	ASST	6 cut(s)	80, 94, 98, 115, 335, 382
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	2 cut(s)	40, 175
SspMI	CTAG	2 cut(s)	218, 279
StyI	CCWWGG	1 cut(s)	444
TaiI	ACGT	2 cut(s)	94, 382
TaqI	TCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	201
TfiI	GAWTC	4 cut(s)	146, 192, 208, 391
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	2 cut(s)	413, 440
Tsp45I	GTSAC	1 cut(s)	35
XspI	CTAG	2 cut(s)	218, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.