Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001725

Physical Location & Seq

Genomic Coordinates Reverse (-)

10222793 .. 10227868

Gene Structure 5076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G172600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGAAGAGGAAAGTTCAAGGGCAAGCCCACCGGTCACCGCCACTTCTCCACCCACGAAGAGATGGTTGCTGGTACCTCTGCTCGTCCACGTAGTTTTAAAAGGGAAGAAGCTGAAGCGGAGGAAGAAGTAGAGTCTGAAGAGGAATCATCAGAAGAAGAAGAATCTGAAAAGCGGAAAGGCACTCAGGGAATCATCGAAATTGAGAATCCCAATCTAGTAAAACCAAAGAATGTGAAGGCTAAAAATGTCGATATTGAGAAAACTTCTGAGCTCTCAAGGCGTGAAAGAGAGGAGATAGAGAAGCAAAAGGCTCATGAGCGGTACATGAGGTTGCAGGAACAGGGAAAAACGGAACAAGCAAAAAAAGATTTAGAACGCTTAGCCCTGATTCGCCAACAAAGGGCAGAAGCCGCTAAGAAGCGAGAAGAAGAAAAGGCTGCCAGGGACCAGAAAAAAGGCGAGGGACGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP28

Protein Analysis

159

Amino Acids

18.38

Weight (kDa)

8.67

Isoelectric Point (pI)

74.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46020
fragaria_vesca	FvH4_3g08340 FvH4_3g19100 FvH4_7g03420
malus_domestica	MD03G1236800.v1.1 MD05G1307600.v1.1 MD10G1286800.v1.1 MD11G1257500.v1.1
prunus_persica	Prupe.4G054900_v2.0.a1 Prupe.4G172600_v2.0.a1 Prupe.4G172600_v2.0.a1
pyrus_communis	pycom03g18270 pycom05g28430 pycom10g23990 pycom10g24000
rosa_chinensis	RchiOBHm_Chr1g0325741 RchiOBHm_Chr5g0009661 RchiOBHm_Chr5g0031891
rosa_laevigata	RLG00000030109 RLG00000033356
rosa_multiflora	Rmu_sc0000164.1_g000007 Rmu_sc0000703.1_g000006 Rmu_sc0004624.1_g000005 Rmu_sc0005375.1_g000028 Rmu_sc0006311.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048370 Rroxscaffold_1G00066550 Rroxscaffold_4G00324430
rosa_rugosa	Rorug01G0054200 Rorug04G0444600 Rorug05G0128600 Rorug05G0128700 Rorug05G0128800
rosa_samantha	Rh1AG069800 Rh1BG057200 Rh1CG070300 Rh1DG074900 Rh5AG076200 Rh5AG222900 Rh5BG071300 Rh5BG223000 Rh5CG083900 Rh5CG246200 Rh5DG071900 Rh5DG227900
rosa_wichuraiana	Rw1G005770 Rw5G007010 Rw5G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	322
AciI	CCGC	5 cut(s)	40, 119, 175, 322, 414
AcuI	CTGAAG	2 cut(s)	135, 159
AfaI	GTAC	2 cut(s)	76, 326
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	443
AluBI	AGCT	2 cut(s)	113, 274
AluI	AGCT	2 cut(s)	113, 274
Alw21I	GWGCWC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	440
AsiGI	ACCGGT	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	445
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	2 cut(s)	414, 441
BlpI	GCTNAGC	1 cut(s)	382
BlsI	GCNGC	2 cut(s)	415, 442
Bme1390I	CCNGG	1 cut(s)	445
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	76, 449
BmrFI	CCNGG	1 cut(s)	445
Bpu1102I	GCTNAGC	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	262
BsaAI	YACGTR	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	200, 261
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	427
BshNI	GGYRCC	1 cut(s)	74
BshTI	ACCGGT	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp1720I	GCTNAGC	1 cut(s)	382
BspACI	CCGC	5 cut(s)	40, 119, 175, 322, 414
BspCNI	CTCAG	2 cut(s)	199, 262
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	76, 449
BspT107I	GGYRCC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	445
Bst6I	CTCTTC	2 cut(s)	54, 135
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	4 cut(s)	186, 270, 382, 417
BstEII	GGTNACC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	3 cut(s)	280, 413, 468
BstNI	CCWGG	1 cut(s)	445
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	26
CciI	TCATGA	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	75, 325
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	2 cut(s)	317, 328
CviJI	RGCY	8 cut(s)	28, 113, 242, 274, 314, 386, 413, 440
CviKI_1	RGCY	8 cut(s)	28, 113, 242, 274, 314, 386, 413, 440
CviQI	GTAC	2 cut(s)	75, 325
DdeI	CTNAG	4 cut(s)	186, 270, 382, 417
DraI	TTTAAA	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	54, 135
EarI	CTCTTC	2 cut(s)	54, 135
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	2 cut(s)	135, 159
Eco91I	GGTNACC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	276
FaeI	CATG	2 cut(s)	320, 331
FaiI	YATR	2 cut(s)	318, 329
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	316, 327
Fnu4HI	GCNGC	2 cut(s)	414, 441
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	414, 441
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	2 cut(s)	414, 441
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	2 cut(s)	320, 331
HinfI	GANTC	6 cut(s)	134, 146, 164, 192, 208, 391
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	4 cut(s)	139, 154, 169, 271
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	280, 413, 468
HpyF3I	CTNAG	4 cut(s)	186, 270, 382, 417
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	2 cut(s)	320, 331
KpnI	GGTACC	1 cut(s)	78
LpnPI	CCDG	9 cut(s)	46, 57, 173, 323, 329, 401, 430, 457, 464
Lsp1109I	GCAGC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	35
MbiI	CCGCTC	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	6 cut(s)	88, 115, 136, 286, 324, 457
MseI	TTAA	1 cut(s)	99
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	445
MwoI	GCNNNNNNNGC	3 cut(s)	280, 413, 468
NlaIII	CATG	2 cut(s)	320, 331
NlaIV	GGNNCC	2 cut(s)	76, 449
NmuCI	GTSAC	1 cut(s)	35
PagI	TCATGA	1 cut(s)	316
PfeI	GAWTC	5 cut(s)	146, 164, 192, 208, 391
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	415, 442
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	443
PspEI	GGTNACC	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	2 cut(s)	76, 449
PspPI	GGNCC	1 cut(s)	448
RsaI	GTAC	2 cut(s)	76, 326
RsaNI	GTAC	2 cut(s)	75, 325
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	414, 441
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	445
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	5 cut(s)	80, 94, 115, 276, 335
SinI	GGWCC	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	5 cut(s)	40, 119, 175, 322, 414
SspMI	CTAG	1 cut(s)	218
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	443
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	198, 252
TasI	AATT	1 cut(s)	201
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	5 cut(s)	146, 164, 192, 208, 391
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	448
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.