Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001725

Physical Location & Seq

Genomic Coordinates Reverse (-)

37621422 .. 37623596

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1286800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGAAGGGGGAAGTACAAGAGCAAGCCCACCGGCCATCGGCAGTTCTCCACTCCCGAAGATCTTCTTGCTGGTACCTCTAGCCGTCCGCGGACTTTTTCGAAGCGGGAAGCTAAGCGTGATGAAGTTGAAGTAGATTTCGTTGCAAGTTCCGAAGAGGAGTCTGGAGATGAATCCGAAGGACATGAGGAGAAGAAGAAGGGGATCCAAGGGATTATTGAGATTGAAAATCCGAATTTGGTAAAGCCGAAGACCGTGAAAGCTCGAGACATTGATATGGGAAGGACAACTGAACTCTCAAGGCGTGAAAGAGAAGAATTGGAGAAACAGAGAGCCCGCGAGAGATATATGAGGCTGCAAGAACAGGGAAAAACTGAACAAGCAAGGAAAGATTTAGAGCGTTTAGCGCTTATACGAGAGCAAAGGGCGGAAGCTGCTGAAAAGAGAGAAGAAGAAAAAGCTGCCAAAGAACAGAAGAAGGTTGAAGCACGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP28

Protein Analysis

166

Amino Acids

19.18

Weight (kDa)

9.19

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP28	PF10252	77 - 154	4.6e-28	Casein kinase substrate phosphoprotein PP28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46020
fragaria_vesca	FvH4_3g08340 FvH4_3g19100 FvH4_7g03420
malus_domestica	MD03G1236800.v1.1 MD05G1307600.v1.1 MD10G1286800.v1.1 MD11G1257500.v1.1
prunus_persica	Prupe.4G054900_v2.0.a1 Prupe.4G172600_v2.0.a1 Prupe.4G172600_v2.0.a1
pyrus_communis	pycom03g18270 pycom05g28430 pycom10g23990 pycom10g24000
rosa_chinensis	RchiOBHm_Chr1g0325741 RchiOBHm_Chr5g0009661 RchiOBHm_Chr5g0031891
rosa_laevigata	RLG00000030109 RLG00000033356
rosa_multiflora	Rmu_sc0000164.1_g000007 Rmu_sc0000703.1_g000006 Rmu_sc0004624.1_g000005 Rmu_sc0005375.1_g000028 Rmu_sc0006311.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048370 Rroxscaffold_1G00066550 Rroxscaffold_4G00324430
rosa_rugosa	Rorug01G0054200 Rorug04G0444600 Rorug05G0128600 Rorug05G0128700 Rorug05G0128800
rosa_samantha	Rh1AG069800 Rh1BG057200 Rh1CG070300 Rh1DG074900 Rh5AG076200 Rh5AG222900 Rh5BG071300 Rh5BG223000 Rh5CG083900 Rh5CG246200 Rh5DG071900 Rh5DG227900
rosa_wichuraiana	Rw1G005770 Rw5G007010 Rw5G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AccII	CGCG	2 cut(s)	91, 339
AciI	CCGC	5 cut(s)	89, 91, 106, 337, 428
AclWI	GGATC	2 cut(s)	199, 212
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	235
AfaI	GTAC	2 cut(s)	17, 76
AfeI	AGCGCT	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	131, 227, 485
AluBI	AGCT	4 cut(s)	113, 263, 434, 461
AluI	AGCT	4 cut(s)	113, 263, 434, 461
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	199, 212
Ama87I	CYCGRG	1 cut(s)	264
Aor51HI	AGCGCT	1 cut(s)	408
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	3 cut(s)	355, 434, 461
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	63
Asp718I	GGTACC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	409
AsuII	TTCGAA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	342, 421, 448
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	410
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	3 cut(s)	356, 435, 462
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	3 cut(s)	357, 436, 463
BmeT110I	CYCGRG	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	76, 206
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	89, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	89, 208
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseRI	GAGGAG	2 cut(s)	173, 203
BseXI	GCAGC	3 cut(s)	342, 421, 448
Bsh1236I	CGCG	2 cut(s)	91, 339
BshFI	GGCC	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	264
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	61, 204
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	5 cut(s)	89, 91, 106, 337, 428
BspANI	GGCC	1 cut(s)	36
BspFNI	CGCG	2 cut(s)	91, 339
BspLI	GGNNCC	2 cut(s)	76, 206
BspPI	GGATC	2 cut(s)	199, 212
BspT104I	TTCGAA	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	89, 208
BssMI	GATC	2 cut(s)	61, 204
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	150
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	26, 337, 490
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	89
BstFNI	CGCG	2 cut(s)	91, 339
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	2 cut(s)	64, 207
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	2 cut(s)	61, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 434
BstUI	CGCG	2 cut(s)	91, 339
BstV1I	GCAGC	3 cut(s)	342, 421, 448
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	2 cut(s)	61, 204
BstYI	RGATCY	2 cut(s)	61, 204
BsuRI	GGCC	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	89
Cac8I	GCNNGC	3 cut(s)	26, 337, 490
CfoI	GCGC	1 cut(s)	409
Cfr10I	RCCGGY	1 cut(s)	32
Cfr42I	CCGCGG	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	16, 75
CviAII	CATG	1 cut(s)	185
CviQI	GTAC	2 cut(s)	16, 75
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	63, 206
DpnII	GATC	2 cut(s)	61, 204
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	337
Eco47III	AGCGCT	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	1 cut(s)	188
FaiI	YATR	5 cut(s)	186, 278, 348, 350, 413
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	1 cut(s)	184
FauI	CCCGC	2 cut(s)	99, 344
Fnu4HI	GCNGC	3 cut(s)	356, 435, 462
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	356, 435, 462
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	3 cut(s)	356, 435, 462
GsuI	CTGGAG	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	2 cut(s)	161, 173
HpaII	CCGG	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	154, 178, 234
Hpy188III	TCNNGA	3 cut(s)	56, 165, 266
HpyAV	CCTTC	4 cut(s)	173, 193, 276, 472
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	146, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 434
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	1 cut(s)	407
KpnI	GGTACC	1 cut(s)	78
KspI	CCGCGG	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	61, 204
LpnPI	CCDG	4 cut(s)	46, 57, 150, 350
Lsp1109I	GCAGC	3 cut(s)	342, 421, 448
MaeI	CTAG	1 cut(s)	81
MalI	GATC	2 cut(s)	63, 206
MboI	GATC	2 cut(s)	61, 204
MflI	RGATCY	2 cut(s)	61, 204
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	2 cut(s)	235, 317
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	4 cut(s)	88, 151, 181, 345
MroXI	GAANNNNTTC	1 cut(s)	63
MslI	CAYNNNNRTG	2 cut(s)	275, 493
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	33
MvnI	CGCG	2 cut(s)	91, 339
MwoI	GCNNNNNNNGC	2 cut(s)	406, 434
NdeII	GATC	2 cut(s)	61, 204
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	2 cut(s)	76, 206
NspV	TTCGAA	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	357, 436, 463
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	76, 206
PsuI	RGATCY	2 cut(s)	61, 204
RsaI	GTAC	2 cut(s)	17, 76
RsaNI	GTAC	2 cut(s)	16, 75
RseI	CAYNNNNRTG	2 cut(s)	275, 493
SacII	CCGCGG	1 cut(s)	92
SatI	GCNGC	3 cut(s)	356, 435, 462
Sau3AI	GATC	2 cut(s)	61, 204
SchI	GAGTC	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	6 cut(s)	80, 115, 265, 436, 463, 483
Sfr274I	CTCGAG	1 cut(s)	264
Sfr303I	CCGCGG	1 cut(s)	92
SfuI	TTCGAA	1 cut(s)	101
SgrBI	CCGCGG	1 cut(s)	92
SlaI	CTCGAG	1 cut(s)	264
SmiMI	CAYNNNNRTG	2 cut(s)	275, 493
SmlI	CTYRAG	2 cut(s)	264, 298
SmoI	CTYRAG	2 cut(s)	264, 298
Sse9I	AATT	2 cut(s)	235, 317
SsiI	CCGC	5 cut(s)	89, 91, 106, 337, 428
SspMI	CTAG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	101, 265
TasI	AATT	2 cut(s)	235, 317
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	355, 434, 461
TspDTI	ATGAA	2 cut(s)	138, 186
XapI	RAATTY	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.