Rroxscaffold_1G00048370

28 kDa heat- and acid-stable phosphoprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001725
Physical Location & Seq
Forward (+)
68336665 .. 68341256
4592 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00048370.1

Sequence Viewer

Length: 198 bp
ATGGGAAGAGGAAAGTTCAAGGGCAAGCCCACCGGCCACCGCCACTTCTCCACTCACGAAGAGATGGTTGCTGGTACCTCTGCCCGTCCACGTAGCTTTAGAAGGGAAGAAGCTGAAGAGGAGGAAGAAGTAGAGTCTGAAGAGGAATCATCGAAGAAGAAGAAGCAGAAAAGCGGAAGGGTACTCGGGGAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP28

Protein Analysis

65

Amino Acids

7.41

Weight (kDa)

8.1

Isoelectric Point (pI)

74.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AciI CCGC 2 cut(s) 40, 174
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 2 cut(s) 135, 159
AfaI GTAC 2 cut(s) 76, 183
AgsI TTSAA 1 cut(s) 19
AluBI AGCT 2 cut(s) 96, 113
AluI AGCT 2 cut(s) 96, 113
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 1 cut(s) 34
Asp718I GGTACC 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 185
BanI GGYRCC 1 cut(s) 74
BccI CCATC 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 76
BsaAI YACGTR 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 134
BshFI GGCC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 33
BsnI GGCC 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 185
BspACI CCGC 2 cut(s) 40, 174
BspANI GGCC 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
Bst6I CTCTTC 3 cut(s) 54, 111, 135
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 32
Csp6I GTAC 2 cut(s) 75, 182
CviJI RGCY 4 cut(s) 28, 36, 96, 113
CviKI_1 RGCY 4 cut(s) 28, 36, 96, 113
CviQI GTAC 2 cut(s) 75, 182
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 3 cut(s) 54, 111, 135
EarI CTCTTC 3 cut(s) 54, 111, 135
Eco57I CTGAAG 2 cut(s) 135, 159
Eco88I CYCGRG 1 cut(s) 185
FaiI YATR 1 cut(s) 196
HaeIII GGCC 1 cut(s) 36
HapII CCGG 1 cut(s) 33
HinfI GANTC 3 cut(s) 134, 146, 191
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 96, 171
HpyCH4IV ACGT 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 91
KpnI GGTACC 1 cut(s) 78
LpnPI CCDG 2 cut(s) 46, 57
MaeII ACGT 1 cut(s) 91
MboII GAAGA 9 cut(s) 18, 71, 119, 128, 137, 152, 166, 169, 172
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 4 cut(s) 88, 112, 115, 136
MspI CCGG 1 cut(s) 33
NlaIV GGNNCC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 146, 191
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 76
RsaI GTAC 2 cut(s) 76, 183
RsaNI GTAC 2 cut(s) 75, 182
SchI GAGTC 1 cut(s) 143
SetI ASST 4 cut(s) 80, 94, 98, 115
SgeI CNNG 7 cut(s) 31, 37, 45, 68, 84, 96, 102
SsiI CCGC 2 cut(s) 40, 174
TaiI ACGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 152
TfiI GAWTC 2 cut(s) 146, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.