Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001725

Physical Location & Seq

Genomic Coordinates Forward (+)

6488078 .. 6490862

Gene Structure 2785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG083900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGCAGAGGAAAGTACAAGAACAAGCCCACTGGTCAGCGCCAGTTCTCCAGTCGCGAAGATCTTCTTGCCGGTACCTCCACCCGTCCCCGTTCTTTTTCAAAGCGAGAAGCTGAACATGAGGAAGAACCGGAAGAGGATTTTGTATCCTTCGAAGATGGGTCTGATGAAGAATCTGATGGACAAGATGAAAAGAAGAAAGGCGTTCAAGGTATAATCGAGATTGAAAATCCTAATTTGGTAAAGCCGAAGACCTTGAAAGCTAAAGACATCGATATTGGAAAACCTACTGAACTCTCACGGCGTGAAAGGGAAGAACTAGAGAAGCAAAGAGCCCGTGAGAGATATATGAAGTTGCAAGAACAGGGGAAAACTGAACAAGCAAGGAAAGATTTAGAGCGTTTGGCGCTTATACGACAACAGAGGGAGGAAGCTGCTAAAAAGCGAGAAGAAGAAAAAAATGCTAAAGAACAGAAGAAGGCTGAATCCCGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP28

Protein Analysis

165

Amino Acids

19.32

Weight (kDa)

8.63

Isoelectric Point (pI)

66.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP28	PF10252	77 - 154	1.5e-30	Casein kinase substrate phosphoprotein PP28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46020
fragaria_vesca	FvH4_3g08340 FvH4_3g19100 FvH4_7g03420
malus_domestica	MD03G1236800.v1.1 MD05G1307600.v1.1 MD10G1286800.v1.1 MD11G1257500.v1.1
prunus_persica	Prupe.4G054900_v2.0.a1 Prupe.4G172600_v2.0.a1 Prupe.4G172600_v2.0.a1
pyrus_communis	pycom03g18270 pycom05g28430 pycom10g23990 pycom10g24000
rosa_chinensis	RchiOBHm_Chr1g0325741 RchiOBHm_Chr5g0009661 RchiOBHm_Chr5g0031891
rosa_laevigata	RLG00000030109 RLG00000033356
rosa_multiflora	Rmu_sc0000164.1_g000007 Rmu_sc0000703.1_g000006 Rmu_sc0004624.1_g000005 Rmu_sc0005375.1_g000028 Rmu_sc0006311.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048370 Rroxscaffold_1G00066550 Rroxscaffold_4G00324430
rosa_rugosa	Rorug01G0054200 Rorug04G0444600 Rorug05G0128600 Rorug05G0128700 Rorug05G0128800
rosa_samantha	Rh1AG069800 Rh1BG057200 Rh1CG070300 Rh1DG074900 Rh5AG076200 Rh5AG222900 Rh5BG071300 Rh5BG223000 Rh5CG083900 Rh5CG246200 Rh5DG071900 Rh5DG227900
rosa_wichuraiana	Rw1G005770 Rw5G007010 Rw5G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	490
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	17, 76
AgsI	TTSAA	4 cut(s)	102, 209, 227, 259
AluBI	AGCT	3 cut(s)	113, 263, 434
AluI	AGCT	3 cut(s)	113, 263, 434
ApeKI	GCWGC	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	63
Asp718I	GGTACC	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	42, 409
AsuII	TTCGAA	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	2 cut(s)	152, 173
BceAI	ACGGC	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	320
BfoI	RGCGCY	2 cut(s)	43, 410
BfuI	GTATCC	1 cut(s)	157
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	3 cut(s)	37, 43, 51
BseCI	ATCGAT	1 cut(s)	273
BseNI	ACTGG	3 cut(s)	37, 43, 51
BseXI	GCAGC	1 cut(s)	421
Bsh1236I	CGCG	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	72, 131
BslFI	GGGAC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	61
Bsp68I	TCGCGA	1 cut(s)	57
BspACI	CCGC	1 cut(s)	490
BspDI	ATCGAT	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	3 cut(s)	37, 43, 51
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	2 cut(s)	43, 410
BstHHI	GCGC	2 cut(s)	42, 409
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	157
BsuTUI	ATCGAT	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	30
BtuMI	TCGCGA	1 cut(s)	57
CfoI	GCGC	2 cut(s)	42, 409
Cfr10I	RCCGGY	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	16, 75
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	7 cut(s)	28, 113, 247, 263, 335, 434, 482
CviKI_1	RGCY	7 cut(s)	28, 113, 247, 263, 335, 434, 482
CviQI	GTAC	2 cut(s)	16, 75
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
DraIII	CACNNNGTG	1 cut(s)	305
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	337
FaeI	CATG	1 cut(s)	122
FaiI	YATR	5 cut(s)	120, 215, 348, 350, 413
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	435
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	2 cut(s)	41, 408
GluI	GCNGC	1 cut(s)	435
GsuI	CTGGAG	1 cut(s)	34
HaeII	RGCGCY	2 cut(s)	43, 410
HapII	CCGG	2 cut(s)	72, 131
HhaI	GCGC	2 cut(s)	42, 409
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	2 cut(s)	40, 407
HinP1I	GCGC	2 cut(s)	40, 407
HinfI	GANTC	2 cut(s)	173, 485
HpaII	CCGG	2 cut(s)	72, 131
Hpy188I	TCNGA	2 cut(s)	166, 178
Hpy188III	TCNNGA	2 cut(s)	56, 220
HpyAV	CCTTC	2 cut(s)	160, 472
HpyCH4V	TGCA	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	2 cut(s)	40, 407
KpnI	GGTACC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	6 cut(s)	18, 56, 64, 85, 144, 350
Lsp1109I	GCAGC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	320
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	1 cut(s)	235
MnlI	CCTC	5 cut(s)	88, 115, 130, 417, 421
MroXI	GAANNNNTTC	1 cut(s)	63
MspI	CCGG	2 cut(s)	72, 131
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	406
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	76
NruI	TCGCGA	1 cut(s)	57
NspV	TTCGAA	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	173, 485
PkrI	GCNGC	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	61
RruI	TCGCGA	1 cut(s)	57
RsaI	GTAC	2 cut(s)	17, 76
RsaNI	GTAC	2 cut(s)	16, 75
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	7 cut(s)	80, 115, 214, 257, 265, 289, 436
SfuI	TTCGAA	1 cut(s)	153
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	490
SspMI	CTAG	1 cut(s)	320
TaqI	TCGA	3 cut(s)	153, 219, 273
TasI	AATT	1 cut(s)	235
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	2 cut(s)	173, 485
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	3 cut(s)	183, 204, 365
TspRI	CASTG	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.