Prupe.4G054900_v2.0.a1

28 kDa heat- and acid-stable

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001725
Physical Location & Seq
Forward (+)
2646808 .. 2649244
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G054900.1

Sequence Viewer

Length: 498 bp
ATGGGAAGGGGAAAGTTCAAGGGCAAGCCCACCGGTCAACGCCAGTTCTCCACTCCCGAAGATCTTCTTGCTGGTACCTCTACTCGTCCTCGCACTTTTTCAAAGAAAGAAGCTGAATATGACGAAGTTGAAGAAGAAATTGTAGAAATTTCCGAAGAGGAGTCTGGAGATGAATCGGAAGGACAAGATGAAAAGAAGAAGGGAATTCAAGGTATTATTGAGATTGAAAATCCTAATTTGGTAAAGCCAAAGACCTTGAAAGTTAAAGACATTGATATTGGAAAAACAACTGAACTCTCAAGGCGTGAAAGAGAAGAGATAGAGAAACAGAGAGCCCGTGAGAGACATATGAGGTTGCAAGAACAAGGAAAAACTGAGGAAGCAAGGAAAGATTTAGAGCGTTTAGCCCTTATAAGAGAACAAAGGGCCGAAGCTGCTAAAAAGAGAGAAGAAGAAAGAGCTGCCAAAGAACAGAAGAAGGTGGCAGCCCGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP28

Protein Analysis

166

Amino Acids

19.1

Weight (kDa)

7.83

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AcsI RAATTY 2 cut(s) 147, 204
AfaI GTAC 1 cut(s) 76
AgeI ACCGGT 1 cut(s) 32
AgsI TTSAA 6 cut(s) 19, 102, 131, 209, 227, 259
AluBI AGCT 3 cut(s) 113, 434, 461
AluI AGCT 3 cut(s) 113, 434, 461
Alw26I GTCTC 1 cut(s) 337
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 3 cut(s) 434, 461, 485
ApoI RAATTY 2 cut(s) 147, 204
AsiGI ACCGGT 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 63
Asp718I GGTACC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 426
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 337
BbvI GCAGC 2 cut(s) 421, 448
BcoDI GTCTC 1 cut(s) 337
BglII AGATCT 1 cut(s) 61
BisI GCNGC 3 cut(s) 435, 462, 486
BlsI GCNGC 3 cut(s) 436, 463, 487
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 283
BsaWI WCCGGW 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 421, 448
BshFI GGCC 1 cut(s) 428
BshNI GGYRCC 1 cut(s) 74
BshTI ACCGGT 1 cut(s) 32
BsiSI CCGG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 337
BsnI GGCC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 61
BspANI GGCC 1 cut(s) 428
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 32
BssMI GATC 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 150, 309
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 375
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstV1I GCAGC 2 cut(s) 421, 448
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 1 cut(s) 428
Cac8I GCNNGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 426
Csp6I GTAC 1 cut(s) 75
CspAI ACCGGT 1 cut(s) 32
CviJI RGCY 9 cut(s) 28, 113, 247, 335, 407, 428, 434, 461, 488
CviKI_1 RGCY 9 cut(s) 28, 113, 247, 335, 407, 428, 434, 461, 488
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 1 cut(s) 375
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 150, 309
EarI CTCTTC 2 cut(s) 150, 309
Eco24I GRGCYC 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 337
FaiI YATR 4 cut(s) 120, 348, 350, 413
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FauNDI CATATG 1 cut(s) 348
Fnu4HI GCNGC 3 cut(s) 435, 462, 486
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 3 cut(s) 435, 462, 486
GluI GCNGC 3 cut(s) 435, 462, 486
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 428
HapII CCGG 1 cut(s) 33
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 2 cut(s) 161, 173
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 154, 178
Hpy188III TCNNGA 2 cut(s) 56, 165
Hpy8I GTNNAC 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 173, 193, 472
HpyCH4V TGCA 1 cut(s) 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 1 cut(s) 375
KpnI GGTACC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 4 cut(s) 46, 56, 57, 150
Lsp1109I GCAGC 2 cut(s) 421, 448
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 4 cut(s) 138, 147, 204, 235
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 5 cut(s) 88, 99, 151, 345, 370
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 264
MspI CCGG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 434
NdeI CATATG 1 cut(s) 348
NdeII GATC 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 173
PinAI ACCGGT 1 cut(s) 32
PkrI GCNGC 3 cut(s) 436, 463, 487
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PsiI TTATAA 1 cut(s) 413
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 426
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 3 cut(s) 435, 462, 486
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 426
SchI GAGTC 1 cut(s) 170
SduI GDGCHC 1 cut(s) 337
SetI ASST 8 cut(s) 80, 115, 214, 257, 356, 436, 463, 483
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 4 cut(s) 138, 147, 204, 235
TasI AATT 4 cut(s) 138, 147, 204, 235
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 3 cut(s) 434, 461, 485
TspDTI ATGAA 2 cut(s) 186, 204
XapI RAATTY 2 cut(s) 147, 204
XmnI GAANNNNTTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.