Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001725

Physical Location & Seq

Genomic Coordinates Reverse (-)

43917564 .. 43919804

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1307600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGAAGGGGGAAGTTCAAGGGCAAGCCCACCGGCCATCGCCAGTTCTCCACTCCCGAAGATCTTCTTGCTGGTAGCTCCAGCCGTCCTCGAACTTTTTCCAAGCGAGAAGCTGAACATGATGAAGTTGAAGTAGATTTTGTAGCAAGCTCCGAAGAGGAGTCCGGAGATGAATCCGAAGGACAAGATGAGAAGAAGAAGGGGATCCAAGGGATTATTGAGATTGAAAATCCGAATTTGGAAAAGCCGAAGACTGTGAAAGCTCGAGACGTTGATATGGGAAGGACAACTGAACTCTCAAGGCGTGAAAGAGAAGAATTAGAGAAACAGAGGACCCGTGAGAGATATATGAGGTTGCAAGAACAGGGAAAAACTGAACAAGCAAGGAAAGATCTAGAGCGTTTAGCTCTTATACGAGAGCAAAGGGCGGAAGCTGCTAAAAAGAGAGAAGAAGAAAAAGCTGCCAAAGAACAGAAGAAGGTTGAAGCCCGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP28

Protein Analysis

166

Amino Acids

19.13

Weight (kDa)

8.71

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP28	PF10252	77 - 154	1.1e-26	Casein kinase substrate phosphoprotein PP28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46020
fragaria_vesca	FvH4_3g08340 FvH4_3g19100 FvH4_7g03420
malus_domestica	MD03G1236800.v1.1 MD05G1307600.v1.1 MD10G1286800.v1.1 MD11G1257500.v1.1
prunus_persica	Prupe.4G054900_v2.0.a1 Prupe.4G172600_v2.0.a1 Prupe.4G172600_v2.0.a1
pyrus_communis	pycom03g18270 pycom05g28430 pycom10g23990 pycom10g24000
rosa_chinensis	RchiOBHm_Chr1g0325741 RchiOBHm_Chr5g0009661 RchiOBHm_Chr5g0031891
rosa_laevigata	RLG00000030109 RLG00000033356
rosa_multiflora	Rmu_sc0000164.1_g000007 Rmu_sc0000703.1_g000006 Rmu_sc0004624.1_g000005 Rmu_sc0005375.1_g000028 Rmu_sc0006311.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048370 Rroxscaffold_1G00066550 Rroxscaffold_4G00324430
rosa_rugosa	Rorug01G0054200 Rorug04G0444600 Rorug05G0128600 Rorug05G0128700 Rorug05G0128800
rosa_samantha	Rh1AG069800 Rh1BG057200 Rh1CG070300 Rh1DG074900 Rh5AG076200 Rh5AG222900 Rh5BG071300 Rh5BG223000 Rh5CG083900 Rh5CG246200 Rh5DG071900 Rh5DG227900
rosa_wichuraiana	Rw1G005770 Rw5G007010 Rw5G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	2 cut(s)	428, 490
AclWI	GGATC	2 cut(s)	199, 212
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	235
AgsI	TTSAA	4 cut(s)	19, 131, 227, 485
AluBI	AGCT	7 cut(s)	78, 113, 150, 263, 407, 434, 461
AluI	AGCT	7 cut(s)	78, 113, 150, 263, 407, 434, 461
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	199, 212
Ama87I	CYCGRG	1 cut(s)	264
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	434, 461
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	2 cut(s)	63, 97
AspS9I	GGNCC	1 cut(s)	333
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	333
BamHI	GGATCC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	421, 448
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	395
BglII	AGATCT	2 cut(s)	61, 391
BisI	GCNGC	2 cut(s)	435, 462
BlsI	GCNGC	2 cut(s)	436, 463
Bme18I	GGWCC	1 cut(s)	333
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	206, 335
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	164
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	421, 448
BshFI	GGCC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	33, 165
BsmAI	GTCTC	1 cut(s)	261
BsmBI	CGTCTC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	264
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	61, 204, 391
BspACI	CCGC	2 cut(s)	428, 490
BspANI	GGCC	1 cut(s)	36
BspEI	TCCGGA	1 cut(s)	164
BspLI	GGNNCC	2 cut(s)	206, 335
BspPI	GGATC	2 cut(s)	199, 212
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	3 cut(s)	61, 204, 391
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	26, 148, 490
BstKTI	GATC	3 cut(s)	64, 207, 394
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	3 cut(s)	61, 204, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstV1I	GCAGC	2 cut(s)	421, 448
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	3 cut(s)	61, 204, 391
BstYI	RGATCY	3 cut(s)	61, 204, 391
BsuRI	GGCC	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	23
Cac8I	GCNNGC	3 cut(s)	26, 148, 490
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	333
CviAII	CATG	1 cut(s)	119
DpnI	GATC	3 cut(s)	63, 206, 393
DpnII	GATC	3 cut(s)	61, 204, 391
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	1 cut(s)	122
FaiI	YATR	5 cut(s)	120, 278, 348, 350, 413
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	435, 462
Fsp4HI	GCNGC	2 cut(s)	435, 462
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	2 cut(s)	435, 462
GsuI	CTGGAG	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	2 cut(s)	33, 165
Hin1II	CATG	1 cut(s)	122
HinfI	GANTC	2 cut(s)	161, 173
HpaII	CCGG	2 cut(s)	33, 165
Hpy188I	TCNGA	3 cut(s)	154, 178, 234
Hpy188III	TCNNGA	4 cut(s)	56, 165, 266, 395
HpyAV	CCTTC	4 cut(s)	173, 193, 276, 472
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	122
Kpn2I	TCCGGA	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	61, 204, 391
LmnI	GCTCC	2 cut(s)	83, 155
LpnPI	CCDG	6 cut(s)	46, 56, 57, 94, 178, 350
Lsp1109I	GCAGC	2 cut(s)	421, 448
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	270
MalI	GATC	3 cut(s)	63, 206, 393
MboI	GATC	3 cut(s)	61, 204, 391
MflI	RGATCY	3 cut(s)	61, 204, 391
MluCI	AATT	2 cut(s)	235, 317
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	4 cut(s)	99, 151, 324, 345
MroI	TCCGGA	1 cut(s)	164
MroXI	GAANNNNTTC	2 cut(s)	63, 97
MspI	CCGG	2 cut(s)	33, 165
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeII	GATC	3 cut(s)	61, 204, 391
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	2 cut(s)	206, 335
PaeR7I	CTCGAG	1 cut(s)	264
PdmI	GAANNNNTTC	2 cut(s)	63, 97
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	436, 463
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	206, 335
PspPI	GGNCC	1 cut(s)	333
PspPPI	RGGWCCY	1 cut(s)	333
PsuI	RGATCY	3 cut(s)	61, 204, 391
SatI	GCNGC	2 cut(s)	435, 462
Sau3AI	GATC	3 cut(s)	61, 204, 391
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	1 cut(s)	170
Sfr274I	CTCGAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	333
SlaI	CTCGAG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	264, 298
SmoI	CTYRAG	2 cut(s)	264, 298
Sse9I	AATT	2 cut(s)	235, 317
SsiI	CCGC	2 cut(s)	428, 490
SspMI	CTAG	1 cut(s)	395
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	91, 265
TasI	AATT	2 cut(s)	235, 317
TfiI	GAWTC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	434, 461
TspDTI	ATGAA	2 cut(s)	138, 186
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	1 cut(s)	235
XbaI	TCTAGA	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	264
XmnI	GAANNNNTTC	2 cut(s)	63, 97
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.