Rmu_sc0004624.1_g000005

Casein kinase substrate phosphoprotein PP28

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004624.1
Physical Location & Seq
Forward (+)
20671 .. 22154
1484 bp
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UTR
Exon/CDS
Intron
Rmu_sc0004624.1_g000005.1.cds

Sequence Viewer

Length: 435 bp
atgcccgtgagcacttcgagtgaaattggtaagctccagagtcccttgaaagttgtggtctttgaagaagaagctgaagaggaggaagaagtagagtctgaagaggaatcatcatcatcagaagaagaagaagcagaacttgagaaaacaactgaactttctaggcgtgaaggggaggagattgaaaaacaaaaggctcatgagcgatacatgaggttgcaggagcagggaaaaactgaacaagcaaagaaagatttagcattcaggtcaagtttgatgtttagcattaaggcaagcagcaaccccgaaacatctcaacaagcagccaacaacactgttccaaaattgagtcaaccaaggaaagcttctacggctatgttgatgttgggagtctgcaggaaattgcttatttgctatgttgatgttgattgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.25

Weight (kDa)

4.68

Isoelectric Point (pI)

89.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 96, 120
AgsI TTSAA 3 cut(s) 49, 65, 185
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AluBI AGCT 3 cut(s) 34, 74, 365
AluI AGCT 3 cut(s) 34, 74, 365
Alw21I GWGCWC 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 297, 323
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 309, 335
BceAI ACGGC 1 cut(s) 387
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 394
BisI GCNGC 2 cut(s) 298, 324
BlsI GCNGC 2 cut(s) 299, 325
BpmI CTGGAG 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 356
BseRI GAGGAG 2 cut(s) 95, 191
BseXI GCAGC 2 cut(s) 309, 335
BsiHKAI GWGCWC 1 cut(s) 14
BslFI GGGAC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 14
BspHI TCATGA 1 cut(s) 199
BspMAI CTGCAG 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 2 cut(s) 72, 96
BstC8I GCNNGC 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstSFI CTRYAG 1 cut(s) 394
BstV1I GCAGC 2 cut(s) 309, 335
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 295
CciI TCATGA 1 cut(s) 199
CviAII CATG 2 cut(s) 200, 211
CviJI RGCY 6 cut(s) 34, 74, 197, 326, 365, 374
CviKI_1 RGCY 6 cut(s) 34, 74, 197, 326, 365, 374
Eam1104I CTCTTC 2 cut(s) 72, 96
EarI CTCTTC 2 cut(s) 72, 96
Eco130I CCWWGG 1 cut(s) 356
Eco57I CTGAAG 2 cut(s) 96, 120
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 2 cut(s) 203, 214
FaiI YATR 4 cut(s) 201, 212, 377, 417
FalI AAGNNNNNCTT 4 cut(s) 123, 155, 349, 381
FaqI GGGAC 1 cut(s) 27
FatI CATG 2 cut(s) 199, 210
Fnu4HI GCNGC 2 cut(s) 298, 324
Fsp4HI GCNGC 2 cut(s) 298, 324
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 298, 324
GsuI CTGGAG 1 cut(s) 20
Hin1II CATG 2 cut(s) 203, 214
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 5 cut(s) 40, 95, 107, 349, 390
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 100, 121
Hpy188III TCNNGA 2 cut(s) 37, 200
Hpy8I GTNNAC 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 2 cut(s) 220, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
Hsp92II CATG 2 cut(s) 203, 214
LmnI GCTCC 2 cut(s) 39, 223
LpnPI CCDG 5 cut(s) 50, 206, 212, 250, 382
Lsp1109I GCAGC 2 cut(s) 309, 335
MaeI CTAG 1 cut(s) 162
MboII GAAGA 8 cut(s) 77, 80, 89, 98, 113, 134, 137, 140
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 3 cut(s) 24, 344, 401
MlyI GAGTC 4 cut(s) 49, 104, 358, 399
MnlI CCTC 5 cut(s) 73, 76, 97, 169, 207
MseI TTAA 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 371
NlaIII CATG 2 cut(s) 203, 214
PagI TCATGA 1 cut(s) 199
PctI GAATGC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 299, 325
PleI GAGTC 4 cut(s) 48, 103, 357, 398
PpsI GAGTC 4 cut(s) 48, 103, 357, 398
PstI CTGCAG 1 cut(s) 398
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 298, 324
SchI GAGTC 4 cut(s) 49, 104, 358, 399
SduI GDGCHC 1 cut(s) 14
SetI ASST 5 cut(s) 36, 76, 218, 269, 367
SfcI CTRYAG 1 cut(s) 394
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 3 cut(s) 24, 344, 401
SspMI CTAG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 1 cut(s) 337
TaqI TCGA 1 cut(s) 17
TasI AATT 3 cut(s) 24, 344, 401
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 340
TseI GCWGC 2 cut(s) 297, 323
TspRI CASTG 1 cut(s) 340
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.