FvH4_3g19100

28 kDa heat- and acid-stable phosphoprotein-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
12293395 .. 12297278
3884 bp
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UTR
Exon/CDS
Intron
FvH4_3g19100.t1

Sequence Viewer

Length: 483 bp
ATGGGCAGAGGAAAGTTCAAGGGCAAGCCCACCGGCCACCGCCACTTCTCCACTCACGAAGAGATGGTTGCCGGTAGCTCTTCTCGGCCACGTAGTTTTAGAAGGGAAGAAGCTGAAGAGGAGGAGGAAGAAGTAGAGTCTGAAGAGGAATCATCAGAAGAAGAAGAATCAGATTCAAAGCGGAAGGGTACTCAGGGACTCATAGAAATTGAGAATCCCAATCTAGTAAAGCCAAAGAATGTGAAGGCTAAAAATGTTGATCTTGAGAAAACAACCGAACTTTCTAGGCGTGAAAGGGAGGAGATTGAAAAACAAAAGGCTCATGAACGATACATGAAGTTGCAGGAGCAGGGAAAAACCGAACAGGCAAAGAAAGATTTAGAGCGTTTAGCCATGATTCGCCAACAAAGGGCAGAGGCCGCTAAGAAGCGAGAAGAGGAGAAGGCTGCCAAGGAACAGAAAAAAGGCGAGGCACGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

161

Amino Acids

18.68

Weight (kDa)

6.96

Isoelectric Point (pI)

84.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP28 PF10252 72 - 149 1.3e-29 Casein kinase substrate phosphoprotein PP28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 40, 181, 420
AcoI YGGCCR 2 cut(s) 34, 86
AcuI CTGAAG 2 cut(s) 135, 162
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 3 cut(s) 19, 177, 308
AleI CACNNNNGTG 1 cut(s) 478
AluBI AGCT 2 cut(s) 78, 113
AluI AGCT 2 cut(s) 78, 113
AoxI GGCC 3 cut(s) 34, 86, 417
ApeKI GCWGC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 433
BccI CCATC 1 cut(s) 58
BfaI CTAG 2 cut(s) 224, 285
BisI GCNGC 2 cut(s) 420, 447
BlsI GCNGC 2 cut(s) 421, 448
BpuEI CTTGAG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 450
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse118I RCCGGY 2 cut(s) 32, 71
BseDI CCNNGG 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 206
BseRI GAGGAG 4 cut(s) 134, 137, 314, 452
BseXI GCAGC 1 cut(s) 433
BshFI GGCC 3 cut(s) 36, 88, 419
BsiSI CCGG 2 cut(s) 33, 72
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 210
BsnI GGCC 3 cut(s) 36, 88, 419
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 3 cut(s) 40, 181, 420
BspANI GGCC 3 cut(s) 36, 88, 419
BspCNI CTCAG 1 cut(s) 205
BspHI TCATGA 1 cut(s) 322
BspQI GCTCTTC 1 cut(s) 85
BsrFI RCCGGY 2 cut(s) 32, 71
BssAI RCCGGY 2 cut(s) 32, 71
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 450
Bst6I CTCTTC 5 cut(s) 54, 85, 111, 138, 429
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 26, 475
BstDEI CTNAG 2 cut(s) 192, 423
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 2 cut(s) 419, 474
BstV1I GCAGC 1 cut(s) 433
BsuRI GGCC 3 cut(s) 36, 88, 419
Cac8I GCNNGC 2 cut(s) 26, 475
CciI TCATGA 1 cut(s) 322
Cfr10I RCCGGY 2 cut(s) 32, 71
Csp6I GTAC 1 cut(s) 189
CviAII CATG 3 cut(s) 323, 334, 394
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 192, 423
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
EaeI YGGCCR 2 cut(s) 34, 86
Eam1104I CTCTTC 5 cut(s) 54, 85, 111, 138, 429
EarI CTCTTC 5 cut(s) 54, 85, 111, 138, 429
Eco130I CCWWGG 1 cut(s) 450
Eco57I CTGAAG 2 cut(s) 135, 162
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 3 cut(s) 326, 337, 397
FaiI YATR 4 cut(s) 203, 324, 335, 395
FaqI GGGAC 1 cut(s) 210
FatI CATG 3 cut(s) 322, 333, 393
Fnu4HI GCNGC 2 cut(s) 420, 447
Fsp4HI GCNGC 2 cut(s) 420, 447
FspBI CTAG 2 cut(s) 224, 285
GluI GCNGC 2 cut(s) 420, 447
HaeIII GGCC 3 cut(s) 36, 88, 419
HapII CCGG 2 cut(s) 33, 72
Hin1II CATG 3 cut(s) 326, 337, 397
HinfI GANTC 7 cut(s) 137, 149, 167, 173, 198, 214, 397
HpaII CCGG 2 cut(s) 33, 72
Hpy188I TCNGA 3 cut(s) 142, 157, 172
Hpy188III TCNNGA 3 cut(s) 56, 263, 323
HpyAV CCTTC 4 cut(s) 96, 178, 238, 436
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 474
HpyF3I CTNAG 2 cut(s) 192, 423
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 3 cut(s) 326, 337, 397
Kzo9I GATC 1 cut(s) 259
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 6 cut(s) 46, 85, 179, 329, 335, 350
Lsp1109I GCAGC 1 cut(s) 433
MaeI CTAG 2 cut(s) 224, 285
MaeII ACGT 1 cut(s) 91
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MluCI AATT 1 cut(s) 207
MlyI GAGTC 2 cut(s) 146, 192
MnlI CCTC 8 cut(s) 112, 115, 118, 139, 292, 409, 430, 463
MslI CAYNNNNRTG 1 cut(s) 478
MspI CCGG 2 cut(s) 33, 72
MwoI GCNNNNNNNGC 2 cut(s) 419, 474
NdeII GATC 1 cut(s) 259
NlaIII CATG 3 cut(s) 326, 337, 397
NmeAIII GCCGAG 1 cut(s) 64
OliI CACNNNNGTG 1 cut(s) 478
PagI TCATGA 1 cut(s) 322
PciSI GCTCTTC 1 cut(s) 85
PfeI GAWTC 5 cut(s) 149, 167, 173, 214, 397
PkrI GCNGC 2 cut(s) 421, 448
PleI GAGTC 2 cut(s) 145, 192
PpsI GAGTC 2 cut(s) 145, 192
Ppu21I YACGTR 1 cut(s) 92
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 478
SapI GCTCTTC 1 cut(s) 85
SatI GCNGC 2 cut(s) 420, 447
Sau3AI GATC 1 cut(s) 259
SchI GAGTC 2 cut(s) 146, 192
SetI ASST 3 cut(s) 80, 94, 115
SmiMI CAYNNNNRTG 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 207
SsiI CCGC 3 cut(s) 40, 181, 420
SspMI CTAG 2 cut(s) 224, 285
StyI CCWWGG 1 cut(s) 450
TaiI ACGT 1 cut(s) 94
TasI AATT 1 cut(s) 207
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 5 cut(s) 149, 167, 173, 214, 397
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 339, 350
XspI CTAG 2 cut(s) 224, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.