Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001725

Physical Location & Seq

Genomic Coordinates Reverse (-)

25689342 .. 25691850

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGTTGCAGTTGCTGGTACCTCTTCCCGTCCACGTAGCTTTAGAAGGCTTGAGAAAACAACTGAACTTTCTAGGCGTGAAAGGGAGGAGATTGAAAAACAAAAGGCTCATGAGCGATACATGAGGTTGCAGGAGCAGGGAAAAACTGAACAAGCAAAGAAAGATTTAGAACGTTTAGCCATGATTCGCCAACAAAGGGCAGAGGCTGCTAAGAAGCGAGAAGAGGAGAAGGCTGCCAAGGAACAGAAAAAAGGCGAGGGACGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP28

Protein Analysis

89

Amino Acids

10.57

Weight (kDa)

10.22

Isoelectric Point (pI)

79.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP28	PF10252	17 - 78	2.3e-26	Casein kinase substrate phosphoprotein PP28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46020
fragaria_vesca	FvH4_3g08340 FvH4_3g19100 FvH4_7g03420
malus_domestica	MD03G1236800.v1.1 MD05G1307600.v1.1 MD10G1286800.v1.1 MD11G1257500.v1.1
prunus_persica	Prupe.4G054900_v2.0.a1 Prupe.4G172600_v2.0.a1 Prupe.4G172600_v2.0.a1
pyrus_communis	pycom03g18270 pycom05g28430 pycom10g23990 pycom10g24000
rosa_chinensis	RchiOBHm_Chr1g0325741 RchiOBHm_Chr5g0009661 RchiOBHm_Chr5g0031891
rosa_laevigata	RLG00000030109 RLG00000033356
rosa_multiflora	Rmu_sc0000164.1_g000007 Rmu_sc0000703.1_g000006 Rmu_sc0004624.1_g000005 Rmu_sc0005375.1_g000028 Rmu_sc0006311.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048370 Rroxscaffold_1G00066550 Rroxscaffold_4G00324430
rosa_rugosa	Rorug01G0054200 Rorug04G0444600 Rorug05G0128600 Rorug05G0128700 Rorug05G0128800
rosa_samantha	Rh1AG069800 Rh1BG057200 Rh1CG070300 Rh1DG074900 Rh5AG076200 Rh5AG222900 Rh5BG071300 Rh5BG223000 Rh5CG083900 Rh5CG246200 Rh5DG071900 Rh5DG227900
rosa_wichuraiana	Rw1G005770 Rw5G007010 Rw5G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	17
AclI	AACGTT	1 cut(s)	172
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
AlwNI	CAGNNNCTG	2 cut(s)	14, 206
ApeKI	GCWGC	2 cut(s)	206, 233
Asp718I	GGTACC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	193, 220
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	2 cut(s)	207, 234
BlsI	GCNGC	2 cut(s)	208, 235
BmiI	GGNNCC	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	101, 239
BseXI	GCAGC	2 cut(s)	193, 220
BshNI	GGYRCC	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	237
Bst6I	CTCTTC	2 cut(s)	28, 216
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 261
BstV1I	GCAGC	2 cut(s)	193, 220
CaiI	CAGNNNCTG	2 cut(s)	14, 206
CciI	TCATGA	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	3 cut(s)	110, 121, 181
CviJI	RGCY	6 cut(s)	39, 49, 107, 179, 206, 233
CviKI_1	RGCY	6 cut(s)	39, 49, 107, 179, 206, 233
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	28, 216
EarI	CTCTTC	2 cut(s)	28, 216
Eco130I	CCWWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	3 cut(s)	113, 124, 184
FaiI	YATR	3 cut(s)	111, 122, 182
FatI	CATG	3 cut(s)	109, 120, 180
Fnu4HI	GCNGC	2 cut(s)	207, 234
Fsp4HI	GCNGC	2 cut(s)	207, 234
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	2 cut(s)	207, 234
Hin1II	CATG	3 cut(s)	113, 124, 184
HinfI	GANTC	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	39, 223
HpyCH4IV	ACGT	2 cut(s)	34, 172
HpyCH4V	TGCA	2 cut(s)	8, 130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 261
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	2 cut(s)	34, 172
Hsp92II	CATG	3 cut(s)	113, 124, 184
KpnI	GGTACC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	2 cut(s)	116, 122
Lsp1109I	GCAGC	2 cut(s)	193, 220
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	2 cut(s)	34, 172
MboII	GAAGA	2 cut(s)	15, 233
MnlI	CCTC	6 cut(s)	31, 79, 117, 196, 217, 250
MwoI	GCNNNNNNNGC	2 cut(s)	206, 261
NlaIII	CATG	3 cut(s)	113, 124, 184
NlaIV	GGNNCC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	208, 235
Ppu21I	YACGTR	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	19
PstNI	CAGNNNCTG	2 cut(s)	14, 206
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SatI	GCNGC	2 cut(s)	207, 234
SetI	ASST	5 cut(s)	23, 37, 41, 128, 175
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SspMI	CTAG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	237
TaiI	ACGT	2 cut(s)	37, 175
TfiI	GAWTC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	206, 233
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.