Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Reverse (-)

18298414 .. 18308243

Gene Structure 9830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4128 bp

ATGGAGGAGAAGAGCGGCTCCTCATGGCGTCTGCAGAGTGGTTCATATCTGGGAGAAGTCTCGGCCCTCTGTTTCCTTCACCCACCTGCTCACCTCTCTCATCAGCTTCCTTACTTGGTGGCCGGGTCGGGTTCGCAAATCTTGGTCTATGAATTGGAGCAGGGAACTATGTTGAGATCCTTGGACGTTTTCCAAGGCATTCGCGTGCAAGGCATTTGCTGCGGCAGCGGCGCTGTGATTGGCGACGACGGAAGTATTGGTTTCGATATGGCTGTGTTTGGGGAGAGGAGAGTGAAGATGTTTAGATTGGAGATTGATTTGGGGCAGCAGCAACAAGTCTTGGATGTTTGTTTGAGGCTGTTGCAGTTGTTGCCTAGCTTTGGGAACTGGGTCTTGGATGTTTCCTTCATCAAGCATGGGGGAGGTGAATGTGTTGCTGTTGGGTGCAGTGACAACTCTGTTCATGTTTGGGATGTAGCTAGTTGTAATGTGGTTCTTCATGTTCAGCATCCTGAGAGGACTCTTCTGTATTCAATGCGGTTATGGGGTGAAACTCTTGAAGCTCTGCGCATTGCATCCGGTACTATCTATAATCAGATCATTGTTTGGAAAGTGGCTCCTGAGTCTGAAGCATCATGTTTGACAAGCCAAGTTGAACACCGTATTGATCAAAGTAATTCACTCTCAAATGGTGTTCAGCTTCCTAATTGTCAGTATGAAGTTATACATATCAGCAAACTTGCAGGACATGAAGGTTCAATATTTCGCCTATCGTGGTCCTCTAATGGATCAAAACTGGTTTCCGTATCTGACGATCGTAGTGCTCGTGTCTGGGCAGTTTGTACTGAAACAAAGCATTCTAAGAAGCCAGCAGACTCCATTGAACTTATGTTGTTTGGTCACAGTGCCCGAGTTTGGGACTGCTGCATTCTTGGATCGTTAATTGTCACAGCTGGTGAGGATTGTACTTGTCGCGTGTGGGGGCTGGATGGTAAGCACCTGGAGACAATCAAGGAGCACACAGGAAGGGGCATATGGCGATGTTTGTATGATCCAAAATCTTCGCTTCTAATTACTGCGGGCTTTGACTCTGCAATTAAAGTACATCAGCTGCACATTTCATACTCTGGGGGATTAGACGGACTTGCAGAGACAAAACAAATTGATGGAATATTTACATACACAACTCGTATCCCTACATTATGTGAGAATATTGGACCTATGGACAGCAAAAGTGAATATGTTCGTTGCTTGCGATTTACATGTGAGGACACCCTTTATGTTGCCACAAACCATGGTTATTTGTACCATGCTAAGCTATTGGATACTGGAGAAGTAGAATGGACGAAACTCGTTCGCGTCAGTGACGAGGTCCCAATTGTTTGCATGGATTTATTGTCAGAATCATTCAATCTTTCTTCGGGTGTTAAGGATTGGATCGCTGTTGGAGATGGTAAAGGAAACATGACAGTTGTTGGGGTTATGTATGGTGCTTCTGCCCCAAAAGTGGGTTTTGCTTTTACTTGGTCAGCTGGAAAAGAAAGACAACTCCTTGGAGCACATTGGTGCCAATCAGTAGGTTATGGGTACATCTTCACTGCTGATCATAGAGGAACGCTGAAGCTCTGGAGTCTGTGTCACTGCTCTGCAAAGAGCTGTGATGTGTCTCTCTTAGCTGAATTCACATCAAGTTTCGGAAGTAGAATTATGTGTTTAGATGCATCATTAGAGGAAGAGGTATTGGTATGTGGAGATATACGTGGAAATCTTCTTTTGTTCCCTTTGTTGAAGAGTGTGTTGCTGGGCACATTGGTTGCTGATGATAACATATCTCCATCAAGTTGTTTCAAAGGTGCTCATGGGATATCAAGCATCTCCAGTGTTGCTGTTGGTAGACTAAGTTCTAATCAGATAGAAATATGCTCGACAGGAGCAGATGGGTGTATATGCTATCTGGAATATGACAAAGATAGGAAGGATTTGGAATTCATAGGGATGAAACAAGTGAAGGAGTTGAGTCTTATTCAATCTGTCTCTGCGTGCAATAGCTCTGTGACCAAGCTGTCAAATTCTCGTTACGCTGCTGGTTTTGCATCAGTGGATTTTATAATTTGGAATTTATTAACTGAGACCAAGGTCATCCAAATTCCATGTGGTGGATGGCGGCGTCCTCATTCCTATTATCTTGGTGATGTACCAGAGATAAAGAACTGCTTTGCATATGTTAAGGATGATATCATTTATATTCATCGACACTGGGTACTGGATGGTGACAGGAAGGCACTCTCTAGGAATTTGCATATGCAATTCCATGGGAGAGAGATGCATTCCATATGCTTTGTCTCAGAGGAATTGCAACATGGAGTAATTGGGAAGGACCGTCTGTCCAATAGATCTAGTTGGATTGCAACTGGTTGTGAAGATGGAACTGTCAGGTTGACTAGGTATATGCCAGGTGTTGAGAATTGGTCTGGATCAAAATTGCTTGGGGAGCATGTTGGTGGATCAGCTGTGAGATCAATATGCTCTGTGTCAAAGATAAACATACTTCCATCAGATATGACGAGCTATCTCAATATGAGAACTCGTGACAATGAAGCAACAGAGAATAGAGAAACTCCGGCTTTATTGATTTCTGTTGGTGCAAAGCGGGTTTTGACTTCATGGCTACTAAGAAATAGGAAAGTAGACAAGAAGGAAGAAATAGTATGTGATCTGCAGCATGACAACACTGGAAATGGCAATACATGTCTGTCCCCAGAGTCACCTTCAATGTCATTCCAGTGGCTATCTACAGATATGCCAGCAAAATATTCTAGTATTCAAAAAGTTCCAAACATTGAGAAAAGAGTTGATCAAGCTGGGGACGTTTCTGATGGGAAAGATGCAGCATCAGAAAAGGGAAACAAAGAGTTGAACCTCATTAAGGATAAATATGAAGATGACTGGAGATACATGGCTGTTACTGCCTTCCTAGTGAAATGTGTCAATTCCAGGATAACCGTCTGTTTTATTGGTGTCGCTTGTTCTGATGCCACCCTTGCATTACGGGCTCTAGTTTTGCCTTATAGGCTATGGTTTGATGTTGCTTTTCTGTGTCCTCTATCATCACCAGTTTTATCCCTACAGCATGTCATCCTTCCTGCATGTCTACCTTCTGAAGGCAATTGGCAGATTGGAAGTTTGTATATCCTCATCAGTGGGGCTACTGATGGAAGTATTGCCTTTTGGGACCTGACTAAAAGCATTGAAGCTTTTATGCAGCTGGTATCAGTACTTGATGTAGAAAAGTTCATTGACTGTCAGAAACGGCCGAGAACAGGGAGGGGAAGTCAAGGTGGACGATGGTGGAGATCTCTAGGCAGTAGCATGTCCCGGAATAGGCAAGGTGCCAGTTCCACCGCTGTTAAAGCTGGAGTGGGAACCGATGAAAAGCCAAAACATTCTGGAACTTCATCAATGCTAAATGATCATGGGAGCAGTAGAACGGCTTCTTCACATGCTACTCATACTGCTTCACTAGATTCAGAAACAAGTGCTTATGATTCCTCATCGGACATATGTGAAATATCACCTTTATTTGTCTTCAAGGCCATTCATCTATCTGGTGTCAATTCTCTCTATGTTTCAGATGTAGAGGGTTGTCAAAGTCCTGAAATCGGTTTTCTCTATAATTTGATTAGTGGGGGTGATGATCAAGCCCTTAGTTGTCTCACATTTGAATTATCAGTGTCAACATCAAGCTCTGAATTTGATAATATGACACTGGAAATAAAAAATTCAATCTCTGAATCTGGAAATGCAAAGAAGTTAATTCATTGTAACCAAGACAAGAACTATTGGATCCGATTCTTAAATCATGATAAAGTCCCCTCAGCTCACAGCTCTGCCGTAAAAGGTGTTTGGACAGACGGATCTTGGGTTTTTTCAACTGGTCTAGATCAGCGTGTCAGGTGCTGGCGTCTCCAGGAGGAAGGTAAATTAATCGAGTATGCTTATCTGGTCATCAGTGTGCCAGAGCCAGAAGCTCTGGATGCTAAACTGTGTGGCAGGAACAAATATCAGATTGCAGTAGCTGGGAGGGGAATGCAAATGCTGGAGTTCTCTGAAATATCTGGCATCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1376

Amino Acids

151.36

Weight (kDa)

6.01

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	138 - 363	3.9e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	240 - 370	1.1e-12	WDR5 beta-propeller domain
WD40	PF00400	244 - 278	8.1e-06	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	245 - 370	4.9e-14	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	250 - 368	4.1e-11	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2108
AarI	CACCTGC	1 cut(s)	94
AasI	GACNNNNNNGTC	1 cut(s)	2062
Acc16I	TGCGCA	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	94
AccB1I	GGYRCC	2 cut(s)	1566, 3389
AccB7I	CCANNNNNTGG	1 cut(s)	2156
AccBSI	CCGCTC	1 cut(s)	15
AccI	GTMKAC	3 cut(s)	1894, 2688, 3151
AccII	CGCG	3 cut(s)	204, 975, 1359
AciI	CCGC	8 cut(s)	15, 222, 228, 538, 1079, 2164, 2650, 3402
AcoI	YGGCCR	2 cut(s)	120, 3311
AcsI	RAATTY	8 cut(s)	1679, 1985, 2068, 2116, 2145, 2293, 3749, 3778
AcuI	CTGAAG	3 cut(s)	648, 1640, 3180
AcyI	GRCGYC	3 cut(s)	28, 2167, 3961
AfaI	GTAC	9 cut(s)	583, 844, 967, 1104, 1307, 1589, 2196, 2262, 3276
AflIII	ACRYGT	2 cut(s)	1262, 2747
AhdI	GACNNNNNGTC	1 cut(s)	2383
AjnI	CCWGG	4 cut(s)	999, 2452, 2993, 3966
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AleI	CACNNNNGTG	1 cut(s)	1564
Alw21I	GWGCWC	4 cut(s)	826, 1020, 1561, 1858
Alw26I	GTCTC	9 cut(s)	64, 998, 1145, 1671, 2038, 2123, 2347, 3716, 3968
AlwNI	CAGNNNCTG	2 cut(s)	3957, 4076
Ama87I	CYCGRG	1 cut(s)	909
AoxI	GGCC	4 cut(s)	63, 120, 3311, 3591
ApoI	RAATTY	8 cut(s)	1679, 1985, 2068, 2116, 2145, 2293, 3749, 3778
AseI	ATTAAT	1 cut(s)	3983
Asp700I	GAANNNNTTC	2 cut(s)	1242, 3490
AspLEI	GCGC	2 cut(s)	233, 570
AspS9I	GGNCC	6 cut(s)	64, 777, 1217, 1372, 2377, 3232
AsuC2I	CCSGG	2 cut(s)	124, 3376
AvaI	CYCGRG	1 cut(s)	909
AvaII	GGWCC	5 cut(s)	777, 1217, 1372, 2377, 3232
BaeGI	GKGCMC	2 cut(s)	910, 1808
BamHI	GGATCC	1 cut(s)	3843
BanI	GGYRCC	2 cut(s)	1566, 3389
BanII	GRGCYC	1 cut(s)	3055
BarI	GAAGNNNNNNTAC	2 cut(s)	3475, 3507
BauI	CACGAG	2 cut(s)	825, 2586
BbsI	GAAGAC	1 cut(s)	3577
Bbv12I	GWGCWC	4 cut(s)	826, 1020, 1561, 1858
BbvCI	CCTCAGC	1 cut(s)	3874
BceAI	ACGGC	3 cut(s)	3326, 3504, 3875
BcgI	CGANNNNNNTGC	2 cut(s)	803, 837
BciT130I	CCWGG	4 cut(s)	1001, 2454, 2995, 3968
BciVI	GTATCC	2 cut(s)	1202, 1318
BclI	TGATCA	5 cut(s)	667, 1603, 2854, 3469, 3694
BcnI	CCSGG	2 cut(s)	124, 3376
BcoDI	GTCTC	9 cut(s)	64, 998, 1145, 1671, 2038, 2123, 2347, 3716, 3968
BfmI	CTRYAG	4 cut(s)	32, 2717, 2793, 3125
BfoI	RGCGCY	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	94
BfuI	GTATCC	2 cut(s)	1202, 1318
BglI	GCCNNNNNGGC	1 cut(s)	3070
BglII	AGATCT	2 cut(s)	2393, 3353
BlpI	GCTNAGC	1 cut(s)	1314
BmcAI	AGTACT	1 cut(s)	3276
Bme1390I	CCNGG	6 cut(s)	124, 1001, 2454, 2995, 3376, 3968
Bme18I	GGWCC	5 cut(s)	777, 1217, 1372, 2377, 3232
BmeRI	GACNNNNNGTC	1 cut(s)	2383
BmeT110I	CYCGRG	1 cut(s)	909
BmgT120I	GGNCC	6 cut(s)	64, 777, 1217, 1372, 2377, 3232
BmiI	GGNNCC	8 cut(s)	19, 618, 1374, 1568, 3233, 3391, 3424, 3845
BmrFI	CCNGG	6 cut(s)	124, 1001, 2454, 2995, 3376, 3968
BmrI	ACTGGG	2 cut(s)	397, 2266
BmuI	ACTGGG	2 cut(s)	397, 2266
BoxI	GACNNNNGTC	1 cut(s)	2135
BpiI	GAAGAC	1 cut(s)	3577
BpmI	CTGGAG	8 cut(s)	1022, 1350, 1648, 1861, 2968, 3435, 3950, 4118
Bpu10I	CCTNAGC	1 cut(s)	3874
Bpu1102I	GCTNAGC	1 cut(s)	1314
BpuMI	CCSGG	2 cut(s)	124, 3376
BsaAI	YACGTR	1 cut(s)	1760
BsaHI	GRCGYC	3 cut(s)	28, 2167, 3961
BsaI	GGTCTC	1 cut(s)	2123
BsaJI	CCNNGG	6 cut(s)	180, 193, 1294, 1552, 2133, 2311
BsaWI	WCCGGW	1 cut(s)	578
BsaXI	ACNNNNNCTCC	4 cut(s)	1621, 1651, 3316, 3346
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	4 cut(s)	1001, 2454, 2995, 3968
BseDI	CCNNGG	6 cut(s)	180, 193, 1294, 1552, 2133, 2311
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	5 cut(s)	504, 612, 2118, 2358, 3888
BseRI	GAGGAG	3 cut(s)	10, 20, 301
BseSI	GKGCMC	2 cut(s)	910, 1808
BseX3I	CGGCCG	1 cut(s)	3311
BseYI	CCCAGC	3 cut(s)	1801, 2861, 4076
BsgI	GTGCAG	2 cut(s)	466, 1097
Bsh1236I	CGCG	3 cut(s)	204, 975, 1359
Bsh1285I	CGRYCG	2 cut(s)	817, 3314
BshFI	GGCC	4 cut(s)	65, 122, 3313, 3593
BshNI	GGYRCC	2 cut(s)	1566, 3389
BsiEI	CGRYCG	2 cut(s)	817, 3314
BsiHKAI	GWGCWC	4 cut(s)	826, 1020, 1561, 1858
BsiHKCI	CYCGRG	1 cut(s)	909
BsiSI	CCGG	4 cut(s)	123, 579, 2621, 3376
BslFI	GGGAC	7 cut(s)	932, 1358, 2740, 2879, 3245, 3358, 3854
BsmAI	GTCTC	9 cut(s)	64, 998, 1145, 1671, 2038, 2123, 2347, 3716, 3968
BsmBI	CGTCTC	1 cut(s)	3968
BsmFI	GGGAC	7 cut(s)	932, 1358, 2740, 2879, 3245, 3358, 3854
BsmI	GAATGC	5 cut(s)	198, 856, 927, 2326, 4092
BsnI	GGCC	4 cut(s)	65, 122, 3313, 3593
Bso31I	GGTCTC	1 cut(s)	2123
BsoBI	CYCGRG	1 cut(s)	909
Bsp1286I	GDGCHC	7 cut(s)	826, 910, 1020, 1561, 1808, 1858, 3055
Bsp1720I	GCTNAGC	1 cut(s)	1314
Bsp19I	CCATGG	2 cut(s)	1294, 2311
BspACI	CCGC	8 cut(s)	15, 222, 228, 538, 1079, 2164, 2650, 3402
BspANI	GGCC	4 cut(s)	65, 122, 3313, 3593
BspCNI	CTCAG	5 cut(s)	505, 613, 2119, 2357, 3887
BspFNI	CGCG	3 cut(s)	204, 975, 1359
BspHI	TCATGA	1 cut(s)	3859
BspLI	GGNNCC	8 cut(s)	19, 618, 1374, 1568, 3233, 3391, 3424, 3845
BspMAI	CTGCAG	2 cut(s)	36, 2721
BspMI	ACCTGC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	5
BspT107I	GGYRCC	2 cut(s)	1566, 3389
BspTNI	GGTCTC	1 cut(s)	2123
BsrBI	CCGCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	570
BssECI	CCNNGG	6 cut(s)	180, 193, 1294, 1552, 2133, 2311
BssNI	GRCGYC	3 cut(s)	28, 2167, 3961
BssSI	CACGAG	2 cut(s)	825, 2586
BssT1I	CCWWGG	6 cut(s)	180, 193, 1294, 1552, 2133, 2311
Bst2BI	CACGAG	2 cut(s)	825, 2586
Bst2UI	CCWGG	4 cut(s)	1001, 2454, 2995, 3968
Bst4CI	ACNGT	8 cut(s)	662, 905, 1471, 2381, 2431, 3004, 3302, 4044
Bst6I	CTCTTC	4 cut(s)	5, 528, 1728, 1784
BstACI	GRCGYC	3 cut(s)	28, 2167, 3961
BstAPI	GCANNNNNTGC	2 cut(s)	219, 370
BstBAI	YACGTR	1 cut(s)	1760
BstC8I	GCNNGC	7 cut(s)	206, 870, 1081, 1253, 2041, 2805, 3959
BstDSI	CCRYGG	2 cut(s)	1294, 2311
BstENI	CCTNNNNNAGG	2 cut(s)	2924, 3159
BstFNI	CGCG	3 cut(s)	204, 975, 1359
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	233, 570
BstMAI	GTCTC	9 cut(s)	64, 998, 1145, 1671, 2038, 2123, 2347, 3716, 3968
BstMCI	CGRYCG	2 cut(s)	817, 3314
BstNI	CCWGG	4 cut(s)	1001, 2454, 2995, 3968
BstNSI	RCATGY	7 cut(s)	1266, 2498, 2751, 3134, 3150, 3373, 3503
BstPAI	GACNNNNGTC	1 cut(s)	2135
BstSCI	CCNGG	6 cut(s)	122, 999, 2452, 2993, 3374, 3966
BstSFI	CTRYAG	4 cut(s)	32, 2717, 2793, 3125
BstSLI	GKGCMC	2 cut(s)	910, 1808
BstUI	CGCG	3 cut(s)	204, 975, 1359
BstV2I	GAAGAC	1 cut(s)	3577
BstX2I	RGATCY	5 cut(s)	176, 2393, 3353, 3843, 3914
BstYI	RGATCY	5 cut(s)	176, 2393, 3353, 3843, 3914
BstZI	CGGCCG	1 cut(s)	3311
BsuI	GTATCC	2 cut(s)	1202, 1318
BsuRI	GGCC	4 cut(s)	65, 122, 3313, 3593
BtgI	CCRYGG	2 cut(s)	1294, 2311
BtgZI	GCGATG	1 cut(s)	1054
BtsI	GCAGTG	3 cut(s)	454, 1596, 1639
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	7 cut(s)	206, 870, 1081, 1253, 2041, 2805, 3959
CaiI	CAGNNNCTG	2 cut(s)	3957, 4076
CciI	TCATGA	1 cut(s)	3859
CfoI	GCGC	2 cut(s)	233, 570
Cfr13I	GGNCC	6 cut(s)	64, 777, 1217, 1372, 2377, 3232
CseI	GACGC	4 cut(s)	17, 1348, 2156, 3950
Csp6I	GTAC	9 cut(s)	582, 843, 966, 1103, 1306, 1588, 2195, 2261, 3275
CviQI	GTAC	9 cut(s)	582, 843, 966, 1103, 1306, 1588, 2195, 2261, 3275
DrdI	GACNNNNNNGTC	1 cut(s)	2062
DriI	GACNNNNNGTC	1 cut(s)	2383
DseDI	GACNNNNNNGTC	1 cut(s)	2062
EaeI	YGGCCR	2 cut(s)	120, 3311
EagI	CGGCCG	1 cut(s)	3311
Eam1104I	CTCTTC	4 cut(s)	5, 528, 1728, 1784
Eam1105I	GACNNNNNGTC	1 cut(s)	2383
EarI	CTCTTC	4 cut(s)	5, 528, 1728, 1784
EclXI	CGGCCG	1 cut(s)	3311
Eco130I	CCWWGG	6 cut(s)	180, 193, 1294, 1552, 2133, 2311
Eco24I	GRGCYC	1 cut(s)	3055
Eco31I	GGTCTC	1 cut(s)	2123
Eco32I	GATATC	2 cut(s)	1866, 2236
Eco47I	GGWCC	5 cut(s)	777, 1217, 1372, 2377, 3232
Eco52I	CGGCCG	1 cut(s)	3311
Eco57I	CTGAAG	3 cut(s)	648, 1640, 3180
Eco88I	CYCGRG	1 cut(s)	909
EcoNI	CCTNNNNNAGG	2 cut(s)	2924, 3159
EcoO109I	RGGNCCY	2 cut(s)	1372, 3232
EcoRI	GAATTC	2 cut(s)	1679, 1985
EcoRII	CCWGG	4 cut(s)	999, 2452, 2993, 3966
EcoRV	GATATC	2 cut(s)	1866, 2236
EcoT14I	CCWWGG	6 cut(s)	180, 193, 1294, 1552, 2133, 2311
EcoT22I	ATGCAT	2 cut(s)	1723, 2328
EcoT38I	GRGCYC	1 cut(s)	3055
ErhI	CCWWGG	6 cut(s)	180, 193, 1294, 1552, 2133, 2311
Esp3I	CGTCTC	1 cut(s)	3968
FalI	AAGNNNNNCTT	2 cut(s)	2198, 2230
FaqI	GGGAC	7 cut(s)	932, 1358, 2740, 2879, 3245, 3358, 3854
FauI	CCCGC	2 cut(s)	1072, 2643
FauNDI	CATATG	5 cut(s)	1034, 2221, 2301, 2333, 3560
FbaI	TGATCA	5 cut(s)	667, 1603, 2854, 3469, 3694
FblI	GTMKAC	3 cut(s)	1894, 2688, 3151
FriOI	GRGCYC	1 cut(s)	3055
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	2 cut(s)	232, 569
GsaI	CCCAGC	3 cut(s)	1805, 2865, 4080
GsuI	CTGGAG	8 cut(s)	1022, 1350, 1648, 1861, 2968, 3435, 3950, 4118
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	4 cut(s)	65, 122, 3313, 3593
HapII	CCGG	4 cut(s)	123, 579, 2621, 3376
HgaI	GACGC	4 cut(s)	17, 1348, 2156, 3950
HhaI	GCGC	2 cut(s)	233, 570
Hin1I	GRCGYC	3 cut(s)	28, 2167, 3961
Hin6I	GCGC	2 cut(s)	231, 568
HinP1I	GCGC	2 cut(s)	231, 568
HincII	GTYRAC	2 cut(s)	2439, 3735
HindII	GTYRAC	2 cut(s)	2439, 3735
HindIII	AAGCTT	1 cut(s)	3252
HpaII	CCGG	4 cut(s)	123, 579, 2621, 3376
Hpy166II	GTNNAC	6 cut(s)	1895, 2439, 2689, 3152, 3341, 3735
Hpy8I	GTNNAC	6 cut(s)	1895, 2439, 2689, 3152, 3341, 3735
Hpy99I	CGWCG	2 cut(s)	248, 251
HpyCH4III	ACNGT	8 cut(s)	662, 905, 1471, 2381, 2431, 3004, 3302, 4044
HpyCH4IV	ACGT	3 cut(s)	186, 1759, 2868
HpySE526I	ACGT	3 cut(s)	186, 1759, 2868
Hsp92I	GRCGYC	3 cut(s)	28, 2167, 3961
HspAI	GCGC	2 cut(s)	231, 568
Ksp22I	TGATCA	5 cut(s)	667, 1603, 2854, 3469, 3694
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	8 cut(s)	23, 157, 622, 1015, 1556, 1931, 2491, 3477
MaeII	ACGT	3 cut(s)	186, 1759, 2868
MbiI	CCGCTC	1 cut(s)	15
MfeI	CAATTG	2 cut(s)	1377, 3166
MflI	RGATCY	5 cut(s)	176, 2393, 3353, 3843, 3914
MhlI	GDGCHC	7 cut(s)	826, 910, 1020, 1561, 1808, 1858, 3055
MlyI	GAGTC	7 cut(s)	514, 632, 869, 1082, 1639, 2026, 2771
MmeI	TCCRAC	2 cut(s)	1426, 2381
Mph1103I	ATGCAT	2 cut(s)	1723, 2328
MroXI	GAANNNNTTC	2 cut(s)	1242, 3490
MslI	CAYNNNNRTG	6 cut(s)	203, 1564, 1994, 2499, 2782, 4010
MspA1I	CMGCKG	7 cut(s)	228, 953, 1111, 1532, 2510, 3265, 3404
MspI	CCGG	4 cut(s)	123, 579, 2621, 3376
MspR9I	CCNGG	6 cut(s)	124, 1001, 2454, 2995, 3376, 3968
MunI	CAATTG	2 cut(s)	1377, 3166
Mva1269I	GAATGC	5 cut(s)	198, 856, 927, 2326, 4092
MvaI	CCWGG	4 cut(s)	1001, 2454, 2995, 3968
MvnI	CGCG	3 cut(s)	204, 975, 1359
NciI	CCSGG	2 cut(s)	124, 3376
NcoI	CCATGG	2 cut(s)	1294, 2311
NdeI	CATATG	5 cut(s)	1034, 2221, 2301, 2333, 3560
NlaIV	GGNNCC	8 cut(s)	19, 618, 1374, 1568, 3233, 3391, 3424, 3845
NmeAIII	GCCGAG	2 cut(s)	41, 3339
NmuCI	GTSAC	9 cut(s)	449, 899, 946, 1364, 1637, 2053, 2270, 2588, 2763
NsbI	TGCGCA	1 cut(s)	569
NsiI	ATGCAT	2 cut(s)	1723, 2328
NspI	RCATGY	7 cut(s)	1266, 2498, 2751, 3134, 3150, 3373, 3503
OliI	CACNNNNGTG	1 cut(s)	1564
PagI	TCATGA	1 cut(s)	3859
PaqCI	CACCTGC	1 cut(s)	94
PciI	ACATGT	2 cut(s)	1262, 2747
PciSI	GCTCTTC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	2 cut(s)	823, 1252
PctI	GAATGC	5 cut(s)	198, 856, 927, 2326, 4092
PdmI	GAANNNNTTC	2 cut(s)	1242, 3490
PfeI	GAWTC	5 cut(s)	1403, 3524, 3545, 3791, 3849
PflFI	GACNNNGTC	1 cut(s)	1370
PflMI	CCANNNNNTGG	1 cut(s)	2156
PfoI	TCCNGGA	3 cut(s)	2993, 3374, 3966
Ple19I	CGATCG	1 cut(s)	817
PleI	GAGTC	7 cut(s)	514, 631, 869, 1082, 1638, 2025, 2770
PpsI	GAGTC	7 cut(s)	514, 631, 869, 1082, 1638, 2025, 2770
Ppu21I	YACGTR	1 cut(s)	1760
PpuMI	RGGWCCY	2 cut(s)	1372, 3232
PscI	ACATGT	2 cut(s)	1262, 2747
PshAI	GACNNNNGTC	1 cut(s)	2135
PshBI	ATTAAT	1 cut(s)	3983
PsiI	TTATAA	1 cut(s)	2108
Psp5II	RGGWCCY	2 cut(s)	1372, 3232
Psp6I	CCWGG	4 cut(s)	999, 2452, 2993, 3966
PspFI	CCCAGC	3 cut(s)	1801, 2861, 4076
PspGI	CCWGG	4 cut(s)	999, 2452, 2993, 3966
PspN4I	GGNNCC	8 cut(s)	19, 618, 1374, 1568, 3233, 3391, 3424, 3845
PspPI	GGNCC	6 cut(s)	64, 777, 1217, 1372, 2377, 3232
PspPPI	RGGWCCY	2 cut(s)	1372, 3232
PsrI	GAACNNNNNNTAC	2 cut(s)	1885, 1917
PstI	CTGCAG	2 cut(s)	36, 2721
PstNI	CAGNNNCTG	2 cut(s)	3957, 4076
PsuI	RGATCY	5 cut(s)	176, 2393, 3353, 3843, 3914
PsyI	GACNNNGTC	1 cut(s)	1370
PvuI	CGATCG	1 cut(s)	817
PvuII	CAGCTG	5 cut(s)	953, 1111, 1532, 2510, 3265
RsaI	GTAC	9 cut(s)	583, 844, 967, 1104, 1307, 1589, 2196, 2262, 3276
RsaNI	GTAC	9 cut(s)	582, 843, 966, 1103, 1306, 1588, 2195, 2261, 3275
RseI	CAYNNNNRTG	6 cut(s)	203, 1564, 1994, 2499, 2782, 4010
SapI	GCTCTTC	1 cut(s)	5
Sau96I	GGNCC	6 cut(s)	64, 777, 1217, 1372, 2377, 3232
ScaI	AGTACT	1 cut(s)	3276
SchI	GAGTC	7 cut(s)	514, 632, 869, 1082, 1639, 2026, 2771
ScrFI	CCNGG	6 cut(s)	124, 1001, 2454, 2995, 3376, 3968
SduI	GDGCHC	7 cut(s)	826, 910, 1020, 1561, 1808, 1858, 3055
SfcI	CTRYAG	4 cut(s)	32, 2717, 2793, 3125
SinI	GGWCC	5 cut(s)	777, 1217, 1372, 2377, 3232
SmiMI	CAYNNNNRTG	6 cut(s)	203, 1564, 1994, 2499, 2782, 4010
SsiI	CCGC	8 cut(s)	15, 222, 228, 538, 1079, 2164, 2650, 3402
SspI	AATATT	4 cut(s)	762, 1173, 1213, 2813
StyD4I	CCNGG	6 cut(s)	122, 999, 2452, 2993, 3374, 3966
StyI	CCWWGG	6 cut(s)	180, 193, 1294, 1552, 2133, 2311
TaaI	ACNGT	8 cut(s)	662, 905, 1471, 2381, 2431, 3004, 3302, 4044
TaiI	ACGT	3 cut(s)	189, 1762, 2871
TaqI	TCGA	4 cut(s)	264, 1925, 2251, 3987
TatI	WGTACW	4 cut(s)	842, 965, 1102, 3274
TauI	GCSGC	4 cut(s)	18, 225, 231, 2167
TfiI	GAWTC	5 cut(s)	1403, 3524, 3545, 3791, 3849
TseFI	GTSAC	9 cut(s)	449, 899, 946, 1364, 1637, 2053, 2270, 2588, 2763
Tsp45I	GTSAC	9 cut(s)	449, 899, 946, 1364, 1637, 2053, 2270, 2588, 2763
TspGWI	ACGGA	4 cut(s)	264, 793, 1155, 3927
Tth111I	GACNNNGTC	1 cut(s)	1370
Van91I	CCANNNNNTGG	1 cut(s)	2156
VpaK11BI	GGWCC	5 cut(s)	777, 1217, 1372, 2377, 3232
VspI	ATTAAT	1 cut(s)	3983
XagI	CCTNNNNNAGG	2 cut(s)	2924, 3159
XapI	RAATTY	8 cut(s)	1679, 1985, 2068, 2116, 2145, 2293, 3749, 3778
XbaI	TCTAGA	1 cut(s)	3937
XceI	RCATGY	7 cut(s)	1266, 2498, 2751, 3134, 3150, 3373, 3503
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2150, 2157
XmiI	GTMKAC	3 cut(s)	1894, 2688, 3151
XmnI	GAANNNNTTC	2 cut(s)	1242, 3490
ZrmI	AGTACT	1 cut(s)	3276
Zsp2I	ATGCAT	2 cut(s)	1723, 2328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.