Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

34094010 .. 34096656

Gene Structure 2647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1281400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTGCGGAGGAAGGGGCATATGGCGATGTTTGTATGATCCGAACTCTTCACTTCTCATTACTGCTGGTTTTGATTCTGCAATTGAAGTGCATCAGCTGCACACTTCCTCTGGGGGCCTTGAGGGACATGCAGAGACAAAAGAATTTACTAGAATGATTACATACACATTTCATATCCCTACTTTTTCAGAGAATATTGGACCTATGAACAGCAAAAGCGAATATGTCTGTCGCTTGCACTTTGCTTGTGAGGATACCCTTTATGTTTCAACAAACTATGGCTATCTGTACCTTGCTAGATTATTGGACACTGGAGAAGTAGAATGGACTGAACTTGTCCGCCTCAGTGAAGAGGTCCAGATTGTTTGCATGGATTTATTTTCAGAACCGCTTGAACTTTGCTCCAACGTTGAGGACTGGGTTGCTGTTGGAGACGGAAAAGGAAACGTAACAATTGTAGGGGTTATATGTGATGCTTGTACTCCTAAAATGGGTTTCTCCCATACTTGGTCAGCTGGGATGGAGCAACAACTCCTAGGAACACATTGGTCCAAGTCACTAGGTTCTGGGTGTTTCTTCACTGCTGATCCTAGAGGAACATTAAGGCTCTGGAAGTTGTCTGACCATTCTGCAAGGAGCTGCAATGTCTCTCTTATAGCAGAGTTCACATCAAGCTTCGGAACTCGAATCATGTGTTTGGATGTATTGTTAGACGAAGAGGTATTGGTATGTGGAGATATACATGGTAATCTTGTTTTGTTCCCTCTGTTGAAGAGTGTCTTGCATGGAACGGTAGAACCTAACCTGAAAGTATCTCCGTCCAATTACTTCAAAGGAGCTCATGGAATATCAAGTGTTTCAAGTCTTGCTATTGCTAGACTAAGCTCCAAAAAGATTGAAATACGCTCGACAGGAGCGGATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

309

Amino Acids

33.77

Weight (kDa)

5.34

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	917
AciI	CCGC	4 cut(s)	6, 340, 389, 917
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	2 cut(s)	32, 581
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	2 cut(s)	290, 481
AfiI	CCNNNNNNNGG	2 cut(s)	491, 507
AgsI	TTSAA	7 cut(s)	86, 270, 395, 772, 832, 861, 899
AluBI	AGCT	6 cut(s)	97, 515, 639, 675, 839, 885
AluI	AGCT	6 cut(s)	97, 515, 639, 675, 839, 885
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	3 cut(s)	128, 426, 652
AlwI	GGATC	2 cut(s)	32, 581
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	97, 639
ApoI	RAATTY	1 cut(s)	143
AspA2I	CCTAGG	1 cut(s)	535
AspS9I	GGNCC	4 cut(s)	115, 200, 355, 549
AvaII	GGWCC	3 cut(s)	200, 355, 549
AvrII	CCTAGG	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	841
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	2 cut(s)	84, 626
BccI	CCATC	2 cut(s)	514, 914
BciVI	GTATCC	1 cut(s)	247
BcoDI	GTCTC	3 cut(s)	128, 426, 652
BfaI	CTAG	6 cut(s)	150, 297, 536, 560, 591, 876
BfuI	GTATCC	1 cut(s)	247
BisI	GCNGC	2 cut(s)	98, 640
BlnI	CCTAGG	1 cut(s)	535
BlsI	GCNGC	2 cut(s)	99, 641
Bme18I	GGWCC	3 cut(s)	200, 355, 549
BmgT120I	GGNCC	4 cut(s)	115, 200, 355, 549
BmiI	GGNNCC	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	2 cut(s)	100, 463
BmuI	ACTGGG	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	2 cut(s)	491, 507
Bse1I	ACTGG	2 cut(s)	316, 422
Bse3DI	GCAATG	1 cut(s)	649
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	3 cut(s)	525, 706, 925
BseLI	CCNNNNNNNGG	2 cut(s)	491, 507
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	1 cut(s)	358
BseNI	ACTGG	2 cut(s)	316, 422
BseXI	GCAGC	2 cut(s)	84, 626
BseYI	CCCAGC	1 cut(s)	515
BsgI	GTGCAG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	841
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	491, 507
BsmAI	GTCTC	3 cut(s)	128, 426, 652
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	841
Bsp143I	GATC	2 cut(s)	37, 586
BspACI	CCGC	4 cut(s)	6, 340, 389, 917
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	32, 581
BsrBI	CCGCTC	1 cut(s)	917
BsrDI	GCAATG	1 cut(s)	649
BsrI	ACTGG	2 cut(s)	316, 422
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	2 cut(s)	37, 586
BssT1I	CCWWGG	1 cut(s)	535
Bst4CI	ACNGT	1 cut(s)	793
Bst6I	CTCTTC	4 cut(s)	52, 345, 711, 767
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	344, 881
BstF5I	GGATG	3 cut(s)	525, 706, 925
BstKTI	GATC	2 cut(s)	40, 589
BstMAI	GTCTC	3 cut(s)	128, 426, 652
BstMBI	GATC	2 cut(s)	37, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	84, 626
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	525, 706, 925
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	3 cut(s)	309, 352, 579
Cac8I	GCNNGC	1 cut(s)	236
Cfr13I	GGNCC	4 cut(s)	115, 200, 355, 549
Csp6I	GTAC	2 cut(s)	289, 480
CviAII	CATG	6 cut(s)	128, 370, 691, 743, 785, 842
CviJI	RGCY	9 cut(s)	97, 117, 282, 515, 607, 639, 675, 839, 885
CviKI_1	RGCY	9 cut(s)	97, 117, 282, 515, 607, 639, 675, 839, 885
CviQI	GTAC	2 cut(s)	289, 480
DdeI	CTNAG	2 cut(s)	344, 881
DpnI	GATC	2 cut(s)	39, 588
DpnII	GATC	2 cut(s)	37, 586
Eam1104I	CTCTTC	4 cut(s)	52, 345, 711, 767
EarI	CTCTTC	4 cut(s)	52, 345, 711, 767
EciI	GGCGGA	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	839
Eco130I	CCWWGG	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	841
Eco47I	GGWCC	3 cut(s)	200, 355, 549
Eco53kI	GAGCTC	1 cut(s)	839
EcoICRI	GAGCTC	1 cut(s)	839
EcoO109I	RGGNCCY	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	841
ErhI	CCWWGG	1 cut(s)	535
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	6 cut(s)	131, 373, 694, 746, 788, 845
FalI	AAGNNNNNCTT	2 cut(s)	764, 796
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	6 cut(s)	127, 369, 690, 742, 784, 841
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	98, 640
FokI	GGATG	2 cut(s)	532, 713
FriOI	GRGCYC	1 cut(s)	841
Fsp4HI	GCNGC	2 cut(s)	98, 640
FspBI	CTAG	6 cut(s)	150, 297, 536, 560, 591, 876
GluI	GCNGC	2 cut(s)	98, 640
GsaI	CCCAGC	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	117
Hin1II	CATG	6 cut(s)	131, 373, 694, 746, 788, 845
HindIII	AAGCTT	1 cut(s)	673
HinfI	GANTC	2 cut(s)	74, 687
Hpy166II	GTNNAC	1 cut(s)	666
Hpy188I	TCNGA	5 cut(s)	42, 190, 385, 622, 680
Hpy188III	TCNNGA	2 cut(s)	358, 610
Hpy8I	GTNNAC	1 cut(s)	666
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	793
HpyCH4IV	ACGT	2 cut(s)	408, 447
HpyCH4V	TGCA	9 cut(s)	80, 91, 100, 131, 238, 369, 632, 642, 784
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	2 cut(s)	344, 881
HpySE526I	ACGT	2 cut(s)	408, 447
Hsp92II	CATG	6 cut(s)	131, 373, 694, 746, 788, 845
Kzo9I	GATC	2 cut(s)	37, 586
LmnI	GCTCC	6 cut(s)	407, 523, 636, 836, 890, 914
Lsp1109I	GCAGC	2 cut(s)	84, 626
LweI	GCATC	2 cut(s)	100, 463
MaeI	CTAG	6 cut(s)	150, 297, 536, 560, 591, 876
MaeII	ACGT	2 cut(s)	408, 447
MaeIII	GTNAC	2 cut(s)	448, 555
MalI	GATC	2 cut(s)	39, 588
MbiI	CCGCTC	1 cut(s)	917
MboI	GATC	2 cut(s)	37, 586
MboII	GAAGA	5 cut(s)	39, 362, 568, 728, 784
MfeI	CAATTG	2 cut(s)	81, 453
MhlI	GDGCHC	1 cut(s)	841
MluCI	AATT	4 cut(s)	81, 143, 453, 823
MmeI	TCCRAC	2 cut(s)	409, 429
MnlI	CCTC	9 cut(s)	115, 118, 244, 346, 353, 406, 587, 712, 774
MseI	TTAA	1 cut(s)	602
MspA1I	CMGCKG	2 cut(s)	97, 515
MunI	CAATTG	2 cut(s)	81, 453
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	2 cut(s)	37, 586
NlaIII	CATG	6 cut(s)	131, 373, 694, 746, 788, 845
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	555
NspI	RCATGY	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	74, 687
PkrI	GCNGC	2 cut(s)	99, 641
Psp124BI	GAGCTC	1 cut(s)	841
Psp1406I	AACGTT	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	515
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	4 cut(s)	115, 200, 355, 549
PvuII	CAGCTG	2 cut(s)	97, 515
RsaI	GTAC	2 cut(s)	290, 481
RsaNI	GTAC	2 cut(s)	289, 480
SacI	GAGCTC	1 cut(s)	841
SaqAI	TTAA	1 cut(s)	602
SatI	GCNGC	2 cut(s)	98, 640
Sau3AI	GATC	2 cut(s)	37, 586
Sau96I	GGNCC	4 cut(s)	115, 200, 355, 549
SduI	GDGCHC	1 cut(s)	841
SfaNI	GCATC	2 cut(s)	100, 463
SinI	GGWCC	3 cut(s)	200, 355, 549
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	4 cut(s)	81, 143, 453, 823
SsiI	CCGC	4 cut(s)	6, 340, 389, 917
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	6 cut(s)	150, 297, 536, 560, 591, 876
SstI	GAGCTC	1 cut(s)	841
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	1 cut(s)	793
TaiI	ACGT	2 cut(s)	411, 450
TaqI	TCGA	2 cut(s)	685, 908
TasI	AATT	4 cut(s)	81, 143, 453, 823
TatI	WGTACW	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	74, 687
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	3 cut(s)	316, 352, 586
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	2 cut(s)	97, 639
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	2 cut(s)	161, 221
TspGWI	ACGGA	2 cut(s)	450, 807
TspRI	CASTG	3 cut(s)	316, 352, 586
VpaK11BI	GGWCC	3 cut(s)	200, 355, 549
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	131
XmaJI	CCTAGG	1 cut(s)	535
XspI	CTAG	6 cut(s)	150, 297, 536, 560, 591, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.