Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

34091696 .. 34094008

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1281300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCTATGGCTGTGGAGAAGAAGAAGAAGGGCGGTTCATGGCGTCTGCAGAGCGGCCAATACCTCGGAGAAATCTCAGCCCTGTGCTTCCTCCACCTTCCTTCTCCCCTCTCTGCTCTCCCTTACCTACTCGCAGGGTCGGGTTCGCAAATCATGGTGTATGATTTGGAAATGGGAAGAATGGTGAGGTCCTTCGACGTGTTCCAAGGGATCCAAGTGCACGGGATAATCTGTTGTGGCTCTAGTTCTAGTACTGAATGCGTAGAGGGAACACTGGCTTCTTCTGTTGCTTTTGAAATCACCGTGTTCTGCGAAAGGAGAGTGAAGATGTTTAGTTTGCAGATTGAAACGGAGCAGCAAGTCAATGTTTGTTTGACTCTCCTGCAATCCTTGCCAAGTTCGCGAATTGGGTCCTGGATGTTTCCTTCTTCAAGTGGTTCAAATGGGGAGGGTGATTGTCTTGCTATAGGTTGTAGTGACAACTCTGTCCTTCTATGGGATGTCTCAGCTTCTTCCGTGGTTCTTCAACTTCGACATCCTGAGAGGACCCTTCTTTATTCAATGCGGTTATGGGGTGACACTGTTCAAGCTCTCCATGTTGCATTTGGCACTATCTATAATGAGATCATTGTATGGAAAGTGGCATCTCAGTATAATGCTGCATCTTTAAGTAATCAAGTAGAAGACGGCATTGATCAGATAAATTCGTTCTCAGACTCTTATCAGCCTCATGCTTGCCAGTATGAAGCTGTTCATATACGCAAACTTGTTGGACATGAAGGTTCAATCTTTTGGATAGCCTGGTCTTTTGATGGAACCAAATTGGTTTCTGTCTCTGATGATCTGCTTGTGTCTGGGCGGTTTGTGCGGAAACAAAGCATTCTGAGAAGCCAGGAGACACCATTGGCCTTGTGCTGTTTGGTCACAATGCCTGAGTTTGGGACTGCTGTCTTCTTGTTGATTGTCACTGCTGGCAAGGACTGCACATGTCGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

333

Amino Acids

36.43

Weight (kDa)

5.66

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	485
AccBSI	CCGCTC	1 cut(s)	54
AccII	CGCG	1 cut(s)	403
AciI	CCGC	5 cut(s)	33, 54, 565, 859, 868
AclWI	GGATC	2 cut(s)	205, 218
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	703
AcyI	GRCGYC	1 cut(s)	43
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	496, 938
AflIII	ACRYGT	2 cut(s)	198, 986
AgsI	TTSAA	8 cut(s)	296, 347, 432, 441, 527, 561, 587, 786
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	3 cut(s)	413, 800, 891
AluBI	AGCT	3 cut(s)	509, 590, 749
AluI	AGCT	3 cut(s)	509, 590, 749
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	508, 838, 890
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	205, 218
AoxI	GGCC	2 cut(s)	55, 906
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	355, 659
ApoI	RAATTY	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	750
AspS9I	GGNCC	3 cut(s)	189, 411, 546
AsuHPI	GGTGA	4 cut(s)	196, 292, 464, 587
AvaII	GGWCC	3 cut(s)	189, 411, 546
BaeGI	GKGCMC	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	690, 943
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	367, 646
BccI	CCATC	1 cut(s)	806
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	3 cut(s)	415, 802, 893
BclI	TGATCA	1 cut(s)	694
BcoDI	GTCTC	3 cut(s)	508, 838, 890
BfaI	CTAG	2 cut(s)	243, 249
BfmI	CTRYAG	2 cut(s)	47, 465
BisI	GCNGC	3 cut(s)	55, 356, 660
BlsI	GCNGC	3 cut(s)	56, 357, 661
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	3 cut(s)	415, 802, 893
Bme18I	GGWCC	3 cut(s)	189, 411, 546
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	3 cut(s)	189, 411, 546
BmiI	GGNNCC	4 cut(s)	212, 412, 548, 817
BmrFI	CCNGG	3 cut(s)	415, 802, 893
BmsI	GCATC	2 cut(s)	653, 671
BoxI	GACNNNNGTC	1 cut(s)	947
BpiI	GAAGAC	2 cut(s)	690, 943
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	64, 205, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 938
Bse1I	ACTGG	2 cut(s)	279, 739
BseBI	CCWGG	3 cut(s)	415, 802, 893
BseDI	CCNNGG	3 cut(s)	64, 205, 516
BseGI	GGATG	3 cut(s)	423, 505, 535
BseLI	CCNNNNNNNGG	2 cut(s)	496, 938
BseMII	CTCAG	7 cut(s)	90, 519, 531, 662, 726, 875, 924
BseNI	ACTGG	2 cut(s)	279, 739
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	367, 646
BsgI	GTGCAG	1 cut(s)	967
Bsh1236I	CGCG	1 cut(s)	403
BshFI	GGCC	2 cut(s)	57, 908
BsiHKAI	GWGCWC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	955
BslI	CCNNNNNNNGG	2 cut(s)	496, 938
BsmAI	GTCTC	3 cut(s)	508, 838, 890
BsmFI	GGGAC	1 cut(s)	955
BsmI	GAATGC	2 cut(s)	263, 879
BsnI	GGCC	2 cut(s)	57, 908
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	4 cut(s)	210, 624, 694, 841
Bsp68I	TCGCGA	1 cut(s)	403
BspACI	CCGC	5 cut(s)	33, 54, 565, 859, 868
BspANI	GGCC	2 cut(s)	57, 908
BspCNI	CTCAG	7 cut(s)	89, 518, 532, 661, 725, 876, 925
BspFNI	CGCG	1 cut(s)	403
BspLI	GGNNCC	4 cut(s)	212, 412, 548, 817
BspMAI	CTGCAG	1 cut(s)	51
BspPI	GGATC	2 cut(s)	205, 218
BsrBI	CCGCTC	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	279, 739
BssECI	CCNNGG	3 cut(s)	64, 205, 516
BssMI	GATC	4 cut(s)	210, 624, 694, 841
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	3 cut(s)	415, 802, 893
Bst4CI	ACNGT	2 cut(s)	304, 583
BstACI	GRCGYC	1 cut(s)	43
BstAPI	GCANNNNNTGC	2 cut(s)	391, 981
BstC8I	GCNNGC	2 cut(s)	736, 973
BstDEI	CTNAG	7 cut(s)	76, 505, 540, 648, 712, 884, 933
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	3 cut(s)	423, 505, 535
BstFNI	CGCG	1 cut(s)	403
BstKTI	GATC	4 cut(s)	213, 627, 697, 844
BstMAI	GTCTC	3 cut(s)	508, 838, 890
BstMBI	GATC	4 cut(s)	210, 624, 694, 841
BstMWI	GCNNNNNNNGC	4 cut(s)	391, 400, 865, 981
BstNI	CCWGG	3 cut(s)	415, 802, 893
BstNSI	RCATGY	1 cut(s)	990
BstPAI	GACNNNNGTC	1 cut(s)	947
BstSCI	CCNGG	3 cut(s)	413, 800, 891
BstSFI	CTRYAG	2 cut(s)	47, 465
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	367, 646
BstV2I	GAAGAC	2 cut(s)	690, 943
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	57, 908
BtgI	CCRYGG	1 cut(s)	516
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	423, 505, 535
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	3 cut(s)	272, 579, 966
BtuMI	TCGCGA	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	736, 973
Cfr13I	GGNCC	3 cut(s)	189, 411, 546
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	6 cut(s)	39, 154, 596, 731, 776, 987
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	7 cut(s)	76, 505, 540, 648, 712, 884, 933
DpnI	GATC	4 cut(s)	212, 626, 696, 843
DpnII	GATC	4 cut(s)	210, 624, 694, 841
DrdI	GACNNNNNNGTC	1 cut(s)	485
DseDI	GACNNNNNNGTC	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	205
Eco47I	GGWCC	3 cut(s)	189, 411, 546
EcoO109I	RGGNCCY	3 cut(s)	189, 411, 546
EcoRII	CCWGG	3 cut(s)	413, 800, 891
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	6 cut(s)	42, 157, 599, 734, 779, 990
FaqI	GGGAC	1 cut(s)	955
FatI	CATG	6 cut(s)	38, 153, 595, 730, 775, 986
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	3 cut(s)	55, 356, 660
FokI	GGATG	3 cut(s)	430, 512, 522
Fsp4HI	GCNGC	3 cut(s)	55, 356, 660
FspBI	CTAG	2 cut(s)	243, 249
GluI	GCNGC	3 cut(s)	55, 356, 660
HaeIII	GGCC	2 cut(s)	57, 908
HgaI	GACGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	6 cut(s)	42, 157, 599, 734, 779, 990
HinfI	GANTC	2 cut(s)	376, 716
HphI	GGTGA	4 cut(s)	196, 292, 464, 587
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	5 cut(s)	68, 699, 715, 838, 885
Hpy188III	TCNNGA	2 cut(s)	402, 539
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	8 cut(s)	22, 107, 111, 202, 435, 500, 560, 773
HpyCH4III	ACNGT	2 cut(s)	304, 583
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	7 cut(s)	49, 220, 340, 385, 602, 662, 984
HpyF10VI	GCNNNNNNNGC	4 cut(s)	391, 400, 865, 981
HpyF3I	CTNAG	7 cut(s)	76, 505, 540, 648, 712, 884, 933
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	6 cut(s)	42, 157, 599, 734, 779, 990
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	4 cut(s)	210, 624, 694, 841
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	2 cut(s)	367, 646
LweI	GCATC	2 cut(s)	653, 671
MaeI	CTAG	2 cut(s)	243, 249
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	4 cut(s)	476, 575, 922, 964
MalI	GATC	4 cut(s)	212, 626, 696, 843
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	4 cut(s)	210, 624, 694, 841
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	3 cut(s)	405, 703, 821
MlyI	GAGTC	2 cut(s)	370, 710
MmeI	TCCRAC	1 cut(s)	751
MnlI	CCTC	8 cut(s)	74, 101, 119, 180, 259, 442, 537, 738
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	1 cut(s)	668
MspR9I	CCNGG	3 cut(s)	415, 802, 893
Mva1269I	GAATGC	2 cut(s)	263, 879
MvaI	CCWGG	3 cut(s)	415, 802, 893
MvnI	CGCG	1 cut(s)	403
MwoI	GCNNNNNNNGC	4 cut(s)	391, 400, 865, 981
NdeII	GATC	4 cut(s)	210, 624, 694, 841
NlaIII	CATG	6 cut(s)	42, 157, 599, 734, 779, 990
NlaIV	GGNNCC	4 cut(s)	212, 412, 548, 817
NmuCI	GTSAC	4 cut(s)	476, 575, 922, 964
NruI	TCGCGA	1 cut(s)	403
NspI	RCATGY	1 cut(s)	990
PciI	ACATGT	1 cut(s)	986
PctI	GAATGC	2 cut(s)	263, 879
PdmI	GAANNNNTTC	1 cut(s)	750
PfoI	TCCNGGA	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	56, 357, 661
PleI	GAGTC	2 cut(s)	370, 710
PpsI	GAGTC	2 cut(s)	370, 710
PpuMI	RGGWCCY	3 cut(s)	189, 411, 546
PscI	ACATGT	1 cut(s)	986
PshAI	GACNNNNGTC	1 cut(s)	947
Psp5II	RGGWCCY	3 cut(s)	189, 411, 546
Psp6I	CCWGG	3 cut(s)	413, 800, 891
PspGI	CCWGG	3 cut(s)	413, 800, 891
PspN4I	GGNNCC	4 cut(s)	212, 412, 548, 817
PspPI	GGNCC	3 cut(s)	189, 411, 546
PspPPI	RGGWCCY	3 cut(s)	189, 411, 546
PstI	CTGCAG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	210
RruI	TCGCGA	1 cut(s)	403
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	3 cut(s)	55, 356, 660
Sau3AI	GATC	4 cut(s)	210, 624, 694, 841
Sau96I	GGNCC	3 cut(s)	189, 411, 546
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	2 cut(s)	370, 710
ScrFI	CCNGG	3 cut(s)	415, 802, 893
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	2 cut(s)	653, 671
SfcI	CTRYAG	2 cut(s)	47, 465
SinI	GGWCC	3 cut(s)	189, 411, 546
Sse9I	AATT	3 cut(s)	405, 703, 821
SsiI	CCGC	5 cut(s)	33, 54, 565, 859, 868
SspMI	CTAG	2 cut(s)	243, 249
StyD4I	CCNGG	3 cut(s)	413, 800, 891
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	304, 583
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	195, 532
TasI	AATT	3 cut(s)	405, 703, 821
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	3 cut(s)	279, 586, 973
TseFI	GTSAC	4 cut(s)	476, 575, 922, 964
TseI	GCWGC	2 cut(s)	355, 659
Tsp45I	GTSAC	4 cut(s)	476, 575, 922, 964
TspDTI	ATGAA	4 cut(s)	27, 743, 759, 792
TspGWI	ACGGA	2 cut(s)	365, 505
TspRI	CASTG	3 cut(s)	279, 586, 973
VneI	GTGCAC	1 cut(s)	218
VpaK11BI	GGWCC	3 cut(s)	189, 411, 546
XapI	RAATTY	1 cut(s)	703
XceI	RCATGY	1 cut(s)	990
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	2 cut(s)	243, 249
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.